CX287451

Overview
NameCX287451
Unique NameCX287451
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length621
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: AGL13_ARATH (Agamous-like MADS-box protein AGL13 OS=Arabidopsis thaliana GN=AGL13 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.544e-15
Identity = 41/70 (58.57%), Postives = 56/70 (80.00%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERY 240
            MGR K++++RIENK   QVTFSKR+SGL+KKA ELSVLCD +++L+IFS+ G+LYEF +   +   +ERY
Sbjct:    1 MGRGKVEVKRIENKITRQVTFSKRKSGLLKKAYELSVLCDAEVSLIIFSTGGKLYEFSNV-GVGRTIERY 69          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: AGL15_BRANA (Agamous-like MADS-box protein AGL15 OS=Brassica napus GN=AGL15 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.017e-15
Identity = 40/70 (57.14%), Postives = 56/70 (80.00%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERY 240
            MGR K++++RIEN +  QVTFSKRR+GL+KKA ELSVLCD ++A+++FS  G+L+EF S+ S+   L RY
Sbjct:    1 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGKLFEF-SSTSMKKTLLRY 69          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: AGL17_ARATH (Agamous-like MADS-box protein AGL17 OS=Arabidopsis thaliana GN=AGL17 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 5.869e-15
Identity = 39/77 (50.65%), Postives = 59/77 (76.62%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRITEE 261
            MGR K+ +Q+I++ +  QVTFSKRR GLIKKA+EL++LCD ++ L+IFS+  +LY+F S+ S+ S +ER+ +   EE
Sbjct:    1 MGRGKIVIQKIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVCLIIFSNTDKLYDFASS-SVKSTIERFNTAKMEE 76          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: PIST_ARATH (Floral homeotic protein PISTILLATA OS=Arabidopsis thaliana GN=PI PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.001e-14
Identity = 36/72 (50.00%), Postives = 57/72 (79.17%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSAD-SLASILERYQ 243
            MGR K++++RIEN +   VTFSKRR+GL+KKA+E++VLCD  +AL+IF+S G++ ++C     L ++L++YQ
Sbjct:    1 MGRGKIEIKRIENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGKMIDYCCPSMDLGAMLDQYQ 72          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MAD47_ORYSJ (MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica GN=MADS47 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.001e-14
Identity = 40/81 (49.38%), Postives = 60/81 (74.07%), Query Frame = 1
Query:    4 QSRAALGQKMGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQS 246
            + RAA G+   R+++ ++RI+N +  QVTFSKRR GL KKA ELS+LCD ++ LV+FS+ G+L++F S  S+  I++RY S
Sbjct:   14 EGRAATGK---RERIAIRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFAST-SMEQIIDRYNS 90          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MAD22_ORYSJ (MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica GN=MADS22 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.001e-14
Identity = 49/129 (37.98%), Postives = 76/129 (58.91%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRITEEAVASGAPKAEDP----------------QAGYSSLQLLKIVQRQLEGPNFEQ 369
            M R++ +++RIE+ +  QVTFSKRR GL KKA ELSVLCD D+AL++FSS G+L  F S+ S+  I+++Y +       ++   KAE P                Q   +SL+L ++   +LEG + ++
Sbjct:    1 MARERREIKRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSHFASS-SMNEIIDKYNTH------SNNLGKAEQPSLDLNLEHSKYAHLNEQLAEASLRLRQMRGEELEGLSIDE 122          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: AGL12_ARATH (Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana GN=AGL12 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.001e-14
Identity = 36/70 (51.43%), Postives = 54/70 (77.14%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERY 240
            M R K+QL+RIEN    QVTF KRR+GL+KKA+ELSVLCD ++ +VIFS +G+L+E  +  ++  ++++Y
Sbjct:    1 MARGKIQLKRIENPVHRQVTFCKRRTGLLKKAKELSVLCDAEIGVVIFSPQGKLFELATKGTMEGMIDKY 70          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MAD30_ORYSJ (MADS-box transcription factor 30 OS=Oryza sativa subsp. japonica GN=MADS30 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.708e-14
Identity = 36/72 (50.00%), Postives = 55/72 (76.39%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSAD-SLASILERYQ 243
            MG+ K++++RIE+ +R QVTFSKRR+G +KKA EL+VLCD  + +V+FS +G+L++FCS    L  +  RY+
Sbjct:    1 MGQGKIEMKRIEDATRRQVTFSKRRAGFLKKANELAVLCDAQVGVVVFSDKGKLFDFCSPPVILMELFHRYE 72          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MEF2B_MOUSE (Myocyte-specific enhancer factor 2B OS=Mus musculus GN=Mef2b PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.230e-14
Identity = 45/115 (39.13%), Postives = 73/115 (63.48%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRITEEAVASGAPKAEDPQAGYSSLQLLKIVQRQ---LEGPNFE 366
            MGRKK+Q+ RI ++   QVTF+KR+ GL+KKA ELSVLCD D+AL+IF+S  RL+++ S+D     ++R   + TE +         +P    ++  +L+ ++R+   L+GP  +
Sbjct:    1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCDIALIIFNSAQRLFQYASSD-----MDRVLLKYTEYS---------EPHESRTNADILQTLKRRGVGLDGPELD 101          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MEF2B_HUMAN (Myocyte-specific enhancer factor 2B OS=Homo sapiens GN=MEF2B PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.230e-14
Identity = 45/115 (39.13%), Postives = 72/115 (62.61%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRITEEAVASGAPKAEDPQAGYSSLQLLKIVQRQ---LEGPNFE 366
            MGRKK+Q+ RI ++   QVTF+KR+ GL+KKA ELSVLCD ++AL+IF+S  RL+++ S D     ++R   + TE +         +P    ++  +L+ ++R+   L+GP  E
Sbjct:    1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTD-----MDRVLLKYTEYS---------EPHESRTNTDILETLKRRGIGLDGPELE 101          
The following BLAST results are available for this feature:
BLAST of CX287451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
AGL13_ARATH1.544e-1558.57Agamous-like MADS-box protein AGL13 OS=Arabidopsis... [more]
AGL15_BRANA2.017e-1557.14Agamous-like MADS-box protein AGL15 OS=Brassica na... [more]
AGL17_ARATH5.869e-1550.65Agamous-like MADS-box protein AGL17 OS=Arabidopsis... [more]
PIST_ARATH1.001e-1450.00Floral homeotic protein PISTILLATA OS=Arabidopsis ... [more]
MAD47_ORYSJ1.001e-1449.38MADS-box transcription factor 47 OS=Oryza sativa s... [more]
MAD22_ORYSJ1.001e-1437.98MADS-box transcription factor 22 OS=Oryza sativa s... [more]
AGL12_ARATH1.001e-1451.43Agamous-like MADS-box protein AGL12 OS=Arabidopsis... [more]
MAD30_ORYSJ1.708e-1450.00MADS-box transcription factor 30 OS=Oryza sativa s... [more]
MEF2B_MOUSE2.230e-1439.13Myocyte-specific enhancer factor 2B OS=Mus musculu... [more]
MEF2B_HUMAN2.230e-1439.13Myocyte-specific enhancer factor 2B OS=Homo sapien... [more]

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Properties
Property NameValue
Genbank descriptionC01009F11SK Veg1 Citrus clementina cDNA clone C01009F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287451 ID=CX287451; Name=CX287451; organism=Citrus clementina; type=EST; length=621bp
TCTCAATCTAGGGCGGCATTGGGTCAGAAAATGGGCCGGAAAAAGCTTCA
ACTGCAGCGAATCGAAAACAAAAGCCGATGTCAAGTAACGTTCTCAAAGC
GGCGTAGCGGATTGATCAAGAAGGCTCGTGAGCTCTCCGTCCTCTGCGAC
GTCGACTTGGCGCTCGTCATCTTCTCCAGCCGCGGTAGGCTTTACGAGTT
CTGTAGCGCCGACAGTTTGGCCAGCATCCTTGAGCGCTACCAGAGTCGCA
TTACAGAGGAAGCTGTAGCTTCAGGAGCACCTAAGGCAGAGGACCCTCAG
GCTGGATATTCGAGCCTGCAACTGCTGAAAATAGTTCAAAGGCAACTTGA
AGGTCCAAACTTTGAGCAGTTCACTGCAGCTGATCTTCTGCAGTTAGAGA
ATCTACTCAACAATACACTGACAGAAATTAGAGCTGTGAAGGTTCATTCC
TATGCTCATTGGGCATCTTTGGTGCAGACACAACTGATGATGGGATCCAT
TAGAACACTCCAAGAGAAGGAAAAGCTGCTGAGAGAAGAGAAAAAGCTTC
TAGAGGGAAAGATTGCAGCAGGGGAGAAGAGTGGTAATGATACAACAGCA
GCGTCTATGGCAACCCTCCCT
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