CX287451

Overview
NameCX287451
Unique NameCX287451
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length621
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MAD31_ORYSJ (MADS-box transcription factor 31 OS=Oryza sativa subsp. japonica GN=MADS31 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.913e-14
Identity = 43/127 (33.86%), Postives = 71/127 (55.91%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSAD-SLASILERY--------QSRITEEAVASGAPKAEDPQAGYSSLQLLKIVQRQLEGPNFEQFTAAD 384
            MGR +++L++IEN +  QVTFSKRR GL+KKA EL++LCD  + +++FS  G++YE+ S    +A+I +RY        +    ++ +     + +D          L+I+ RQ  G +    T  D
Sbjct:    1 MGRGRVELKKIENPTNRQVTFSKRRMGLLKKANELAILCDAQIGVIVFSGTGKMYEYSSPPWRIANIFDRYLKAPSTRFEEMDVQQRIIQEMTRMKDEN------NRLRIIMRQYMGDDLASLTLQD 121          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MAD32_ORYSJ (MADS-box transcription factor 32 OS=Oryza sativa subsp. japonica GN=MADS32 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.804e-14
Identity = 39/74 (52.70%), Postives = 54/74 (72.97%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCS--ADSLASILERYQS 246
            MGR + +++RIEN ++ Q TF KRR GL KKAREL+VLCD DL L++FS+ G+LY F S    S+   +ERY++
Sbjct:    1 MGRGRSEIKRIENPTQRQSTFYKRRDGLFKKARELAVLCDADLLLLLFSASGKLYHFLSPTVPSVREFVERYEA 74          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MEF2_DROME (Myocyte-specific enhancer factor 2 OS=Drosophila melanogaster GN=Mef2 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 8.474e-14
Identity = 42/102 (41.18%), Postives = 63/102 (61.76%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERY-----------QSRITEEAVASGAPKAEDPQA 303
            MGRKK+Q+ RI ++   QVTF+KR+ G++KKA ELSVLCD ++AL+IFSS  +LY++ S D +  +L +Y              I E+   +G    + P+A
Sbjct:    1 MGRKKIQISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFSSSNKLYQYASTD-MDRVLLKYTEYNEPHESLTNKNIIEKENKNGVMSPDSPEA 101          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MAD55_ORYSJ (MADS-box transcription factor 55 OS=Oryza sativa subsp. japonica GN=MADS55 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.446e-13
Identity = 37/70 (52.86%), Postives = 55/70 (78.57%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERY 240
            M R++ +++RIE+ +  QVTFSKRR GL KKA EL+VLCD D+ALV+FSS G+L +F S+ ++  I+++Y
Sbjct:    1 MARERREIRRIESAAARQVTFSKRRRGLFKKAEELAVLCDADVALVVFSSTGKLSQFASS-NMNEIIDKY 69          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MEF2C_PIG (Myocyte-specific enhancer factor 2C OS=Sus scrofa GN=MEF2C PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.888e-13
Identity = 43/106 (40.57%), Postives = 66/106 (62.26%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASIL------ERYQSRITEEAVASGAPK------AEDPQAGYS 312
            MGRKK+Q+ RI ++   QVTF+KR+ GL+KKA ELSVLCD ++AL+IF+S  +L+++ S D    +L      E ++SR   + V +   K      + DP + Y+
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKYTEYNEPHESRTNSDIVEALNKKENKGCESPDPDSSYA 106          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MEF2D_XENLA (Myocyte-specific enhancer factor 2D homolog OS=Xenopus laevis GN=mef2d PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.466e-13
Identity = 36/70 (51.43%), Postives = 54/70 (77.14%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERY 240
            MGRKK+Q+QRI ++   QVTF+KR+ GL+KKA ELSVLCD ++AL+IF+   +L+++ S D +  +L +Y
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTD-MDKVLLKY 69          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MEF2D_RAT (Myocyte-specific enhancer factor 2D OS=Rattus norvegicus GN=Mef2d PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.466e-13
Identity = 36/70 (51.43%), Postives = 54/70 (77.14%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERY 240
            MGRKK+Q+QRI ++   QVTF+KR+ GL+KKA ELSVLCD ++AL+IF+   +L+++ S D +  +L +Y
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTD-MDKVLLKY 69          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MEF2D_MOUSE (Myocyte-specific enhancer factor 2D OS=Mus musculus GN=Mef2d PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.466e-13
Identity = 36/70 (51.43%), Postives = 54/70 (77.14%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERY 240
            MGRKK+Q+QRI ++   QVTF+KR+ GL+KKA ELSVLCD ++AL+IF+   +L+++ S D +  +L +Y
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTD-MDKVLLKY 69          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MEF2D_HUMAN (Myocyte-specific enhancer factor 2D OS=Homo sapiens GN=MEF2D PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.466e-13
Identity = 36/70 (51.43%), Postives = 54/70 (77.14%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERY 240
            MGRKK+Q+QRI ++   QVTF+KR+ GL+KKA ELSVLCD ++AL+IF+   +L+++ S D +  +L +Y
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTD-MDKVLLKY 69          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MEF2A_PONAB (Myocyte-specific enhancer factor 2A OS=Pongo abelii GN=MEF2A PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.466e-13
Identity = 43/101 (42.57%), Postives = 60/101 (59.41%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILE----------RYQSRITEEAVASGAPKAEDPQA 303
            MGRKK+Q+ RI ++   QVTF+KR+ GL+KKA ELSVLCD ++AL+IF+S  +L+++ S D    +L+          R  S I E     G    E P A
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESRTNSDIVETLRKKGLNGCESPDA 101          
The following BLAST results are available for this feature:
BLAST of CX287451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
MAD31_ORYSJ2.913e-1433.86MADS-box transcription factor 31 OS=Oryza sativa s... [more]
MAD32_ORYSJ3.804e-1452.70MADS-box transcription factor 32 OS=Oryza sativa s... [more]
MEF2_DROME8.474e-1441.18Myocyte-specific enhancer factor 2 OS=Drosophila m... [more]
MAD55_ORYSJ1.446e-1352.86MADS-box transcription factor 55 OS=Oryza sativa s... [more]
MEF2C_PIG1.888e-1340.57Myocyte-specific enhancer factor 2C OS=Sus scrofa ... [more]
MEF2D_XENLA2.466e-1351.43Myocyte-specific enhancer factor 2D homolog OS=Xen... [more]
MEF2D_RAT2.466e-1351.43Myocyte-specific enhancer factor 2D OS=Rattus norv... [more]
MEF2D_MOUSE2.466e-1351.43Myocyte-specific enhancer factor 2D OS=Mus musculu... [more]
MEF2D_HUMAN2.466e-1351.43Myocyte-specific enhancer factor 2D OS=Homo sapien... [more]
MEF2A_PONAB2.466e-1342.57Myocyte-specific enhancer factor 2A OS=Pongo abeli... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01009F11SK Veg1 Citrus clementina cDNA clone C01009F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287451 ID=CX287451; Name=CX287451; organism=Citrus clementina; type=EST; length=621bp
TCTCAATCTAGGGCGGCATTGGGTCAGAAAATGGGCCGGAAAAAGCTTCA
ACTGCAGCGAATCGAAAACAAAAGCCGATGTCAAGTAACGTTCTCAAAGC
GGCGTAGCGGATTGATCAAGAAGGCTCGTGAGCTCTCCGTCCTCTGCGAC
GTCGACTTGGCGCTCGTCATCTTCTCCAGCCGCGGTAGGCTTTACGAGTT
CTGTAGCGCCGACAGTTTGGCCAGCATCCTTGAGCGCTACCAGAGTCGCA
TTACAGAGGAAGCTGTAGCTTCAGGAGCACCTAAGGCAGAGGACCCTCAG
GCTGGATATTCGAGCCTGCAACTGCTGAAAATAGTTCAAAGGCAACTTGA
AGGTCCAAACTTTGAGCAGTTCACTGCAGCTGATCTTCTGCAGTTAGAGA
ATCTACTCAACAATACACTGACAGAAATTAGAGCTGTGAAGGTTCATTCC
TATGCTCATTGGGCATCTTTGGTGCAGACACAACTGATGATGGGATCCAT
TAGAACACTCCAAGAGAAGGAAAAGCTGCTGAGAGAAGAGAAAAAGCTTC
TAGAGGGAAAGATTGCAGCAGGGGAGAAGAGTGGTAATGATACAACAGCA
GCGTCTATGGCAACCCTCCCT
back to top