CX287461

Overview
NameCX287461
Unique NameCX287461
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length589
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287461 vs. ExPASy Swiss-Prot
Match: TOM1_DICDI (Target of Myb protein 1 OS=Dictyostelium discoideum GN=tom1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.713e-16
Identity = 48/125 (38.40%), Postives = 78/125 (62.40%), Query Frame = 3
Query:  213 MVNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVK-IARKKPDTHVKEKILILIDTWQEAFGGPRARYPQYY 584
            MV  +VD+AT+++LI  DW   ++I D+LN DP  A+ VV+ + K++  R S+V LLAL L +++++NC    H++ AE+    E+ + I  KK   +VKEK L ++++W  AF   R   P +Y
Sbjct:    1 MVTELVDKATNELLIQTDWTTVLQISDILNRDPIHARGVVRQVTKKLKDR-SRVILLALELADSLLQNC-HCTHVYFAERTFQTELCRLIMNKKTKLNVKEKTLEIVESWGNAFQA-RHDVPGFY 122          
BLAST of CX287461 vs. ExPASy Swiss-Prot
Match: STAM2_MOUSE (Signal transducing adapter molecule 2 OS=Mus musculus GN=Stam2 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.283e-13
Identity = 38/108 (35.19%), Postives = 59/108 (54.63%), Query Frame = 3
Query:  228 VDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAF 551
            V++AT++     DW++ ++ICD +   P  AKD +K I KR+  +   V L ALTLL   + NCG I H+ V  ++   E+  + + K    V EK+  L+  W E F
Sbjct:   13 VEKATNEYNTTEDWSLIMDICDRVGSTPSGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRSVIKNKAHPKVCEKLKSLMVEWSEEF 120          
BLAST of CX287461 vs. ExPASy Swiss-Prot
Match: STAM2_RAT (Signal transducing adapter molecule 2 OS=Rattus norvegicus GN=Stam2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.676e-13
Identity = 38/108 (35.19%), Postives = 59/108 (54.63%), Query Frame = 3
Query:  228 VDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAF 551
            V++AT++     DW++ ++ICD +   P  AKD +K I KR+  +   V L ALTLL   + NCG I H+ V  ++   E+  + + K    V EK+  L+  W E F
Sbjct:   13 VEKATNEYNTTEDWSLIMDICDRVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEF 120          
BLAST of CX287461 vs. ExPASy Swiss-Prot
Match: STAM2_HUMAN (Signal transducing adapter molecule 2 OS=Homo sapiens GN=STAM2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.676e-13
Identity = 38/108 (35.19%), Postives = 59/108 (54.63%), Query Frame = 3
Query:  228 VDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAF 551
            V++AT++     DW++ ++ICD +   P  AKD +K I KR+  +   V L ALTLL   + NCG I H+ V  ++   E+  + + K    V EK+  L+  W E F
Sbjct:   13 VEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEF 120          
BLAST of CX287461 vs. ExPASy Swiss-Prot
Match: VPS27_YARLI (Vacuolar protein sorting-associated protein 27 OS=Yarrowia lipolytica GN=VPS27 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.319e-13
Identity = 40/117 (34.19%), Postives = 68/117 (58.12%), Query Frame = 3
Query:  216 VNSMVDRATSDMLIG--PDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARK-KPDTHVKEKILILIDTWQEAFGG 557
            ++  V++ATS+ L     D A+N+EICD++      AKD ++ +K+R+ +RN  VQL AL L +  IKN G    + +A +  +  ++ IAR    +  V++++L L+  W  AF G
Sbjct:   10 IDEQVEKATSESLPSGESDLALNLEICDLIRSKTVPAKDAMRSLKRRLLNRNPNVQLAALQLTDVCIKNGGSHFLVEIASREFVDPLMAIARNDDANPEVRQRVLQLLQQWAVAFAG 126          
BLAST of CX287461 vs. ExPASy Swiss-Prot
Match: VPS27_PHANO (Vacuolar protein sorting-associated protein 27 OS=Phaeosphaeria nodorum GN=VPS27 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.419e-12
Identity = 43/128 (33.59%), Postives = 65/128 (50.78%), Query Frame = 3
Query:  186 WLGESERAEMVNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARK----KPDTHVKEKILILIDTWQEAFGG 557
            W G S  +   +  ++RATS  L   D  +N+EI D++     Q KD +K +KKRIG +N  VQL  L L +T +KN G      +A +  +  +  + +      P+  VK K+L LI +W  A  G
Sbjct:    4 WFGSSTNSAF-DEQIERATSSSL--EDMPLNLEISDVIRSKTVQPKDAMKSLKKRIGHKNPNVQLATLNLTDTCVKNGGAHFIQEIASREFMDNLTSLLKAPSTIAPNNDVKNKMLELIQSWATAAEG 128          
BLAST of CX287461 vs. ExPASy Swiss-Prot
Match: HRS_DROME (Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Drosophila melanogaster GN=Hrs PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.161e-12
Identity = 37/108 (34.26%), Postives = 55/108 (50.93%), Query Frame = 3
Query:  228 VDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAF 551
            ++ ATS + + PDW   + ICD +N      K+    IKK++ S N      +L +LE+I+KNCG  VH  V  K             P  +V++K+L L+ TW  AF
Sbjct:   10 LENATSHLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAF 117          
BLAST of CX287461 vs. ExPASy Swiss-Prot
Match: HSE1_USTMA (Class E vacuolar protein-sorting machinery protein HSE1 OS=Ustilago maydis GN=HSE1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.392e-12
Identity = 38/112 (33.93%), Postives = 64/112 (57.14%), Query Frame = 3
Query:  225 MVDRATSDMLIGPDWAMNIEICDMLNHDPGQA-KDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTH--VKEKILILIDTWQEAF 551
            +V +ATSD L   +W +N+E+CD ++     A ++ +  I+KR+  RN+ VQL ALTL + + KNCG   H  +A ++    + +I   + +TH  VK++   L+  W   F
Sbjct:   11 IVLKATSDELTSENWELNLEVCDKVSSGGDTAARNCIAAIQKRLVHRNANVQLYALTLADAVAKNCGLAAHQEIASRSFTQTLARICLDR-NTHSTVKKRCSALVKEWAGEF 121          
BLAST of CX287461 vs. ExPASy Swiss-Prot
Match: HSE1_COCIM (Class E vacuolar protein-sorting machinery protein HSE1 OS=Coccidioides immitis GN=HSE1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.392e-12
Identity = 37/113 (32.74%), Postives = 62/113 (54.87%), Query Frame = 3
Query:  219 NSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTH--VKEKILILIDTWQEAF 551
            + +V +AT + L   +W   +++CD ++ D   AKD V  + KR+  RN+ VQL    L   + +NCG   H  +A K+    ++++A  + +TH  VK KIL  ++ W E F
Sbjct:   10 DDIVAKATDENLTSENWEYILDVCDKVSADESGAKDAVASMIKRLAHRNANVQLYTFELANALSQNCGPKAHRELASKSFTDALLRLANDR-NTHPQVKSKILEHMEQWTEMF 121          
BLAST of CX287461 vs. ExPASy Swiss-Prot
Match: HSE1_EMENI (Class E vacuolar protein-sorting machinery protein hse1 OS=Emericella nidulans GN=hse1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.198e-12
Identity = 36/110 (32.73%), Postives = 61/110 (55.45%), Query Frame = 3
Query:  228 VDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTH--VKEKILILIDTWQEAF 551
            V +AT + L   +W   +++CD +  +   AKD V  + KR+  RN+ VQL  L L   + +NCG  +H  +A ++    ++++A  + +TH  VK KIL  ++ W E F
Sbjct:   13 VAKATDENLTSENWEYILDVCDKVGAEESGAKDAVAALIKRLAHRNANVQLYTLELANALAQNCGPKIHRELASRSFTDALLRLAGDR-NTHQQVKSKILERMEDWTEMF 121          
The following BLAST results are available for this feature:
BLAST of CX287461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
TOM1_DICDI4.713e-1638.40Target of Myb protein 1 OS=Dictyostelium discoideu... [more]
STAM2_MOUSE1.283e-1335.19Signal transducing adapter molecule 2 OS=Mus muscu... [more]
STAM2_RAT1.676e-1335.19Signal transducing adapter molecule 2 OS=Rattus no... [more]
STAM2_HUMAN1.676e-1335.19Signal transducing adapter molecule 2 OS=Homo sapi... [more]
VPS27_YARLI8.319e-1334.19Vacuolar protein sorting-associated protein 27 OS=... [more]
VPS27_PHANO1.419e-1233.59Vacuolar protein sorting-associated protein 27 OS=... [more]
HRS_DROME3.161e-1234.26Hepatocyte growth factor-regulated tyrosine kinase... [more]
HSE1_USTMA5.392e-1233.93Class E vacuolar protein-sorting machinery protein... [more]
HSE1_COCIM5.392e-1232.74Class E vacuolar protein-sorting machinery protein... [more]
HSE1_EMENI9.198e-1232.73Class E vacuolar protein-sorting machinery protein... [more]

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Properties
Property NameValue
Genbank descriptionC01009G09SK Veg1 Citrus clementina cDNA clone C01009G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287461 ID=CX287461; Name=CX287461; organism=Citrus clementina; type=EST; length=589bp
GTTTTAGAGAGAGAAAGTGGGAGAAAAAGAGAGATAATATCAATACTGTT
CGATTTAATTGATCGAGAAAGAGATAAATCTTTTCGTTACCGGAATATCC
GGTGGCATAACGGTAATTAGTTGCGATCTCGGAGCCGGAATCGGAGTGAT
CTTCTTGGAGAGGTGTTTGATTTGATTCGTTTGTTTGGTTGGGAGAGAGT
GAGAGAGCAGAGATGGTGAATTCAATGGTGGATAGAGCCACGAGCGACAT
GTTGATCGGCCCTGATTGGGCCATGAACATCGAGATCTGTGACATGCTCA
ATCACGACCCTGGGCAAGCAAAGGATGTTGTTAAAGGTATTAAAAAGCGT
ATTGGAAGTAGGAATTCAAAAGTTCAACTTCTTGCTTTAACACTGTTGGA
GACAATTATAAAGAATTGTGGGGATATTGTCCATATGCATGTTGCAGAGA
AAAATGTTCTTCATGAGATGGTGAAAATAGCCAGGAAAAAGCCCGACACT
CACGTCAAAGAGAAGATATTAATTCTAATAGATACTTGGCAAGAAGCTTT
CGGAGGACCTAGGGCAAGATATCCACAGTACTATGCGGC
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