CX287461

Overview
NameCX287461
Unique NameCX287461
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length589
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287461 vs. ExPASy Swiss-Prot
Match: HSE1_ASPNC (Class E vacuolar protein-sorting machinery protein hse1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=hse1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.201e-11
Identity = 36/110 (32.73%), Postives = 60/110 (54.55%), Query Frame = 3
Query:  228 VDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTH--VKEKILILIDTWQEAF 551
            V +AT + L   +W   +++CD +  +   AKD V  + KR+  RN+ VQL  L L   + +NCG  +H  +A ++    ++++A  + +TH  VK KIL  +  W E F
Sbjct:   13 VAKATDENLTSENWEYILDVCDKVGAEESGAKDAVAAMIKRLAHRNANVQLYTLELANALAQNCGPKIHRELASRSFTDALLRLANDR-NTHQQVKSKILERMQEWTEMF 121          
BLAST of CX287461 vs. ExPASy Swiss-Prot
Match: HSE1_NEUCR (Class E vacuolar protein-sorting machinery protein hse-1 OS=Neurospora crassa GN=hse-1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.569e-11
Identity = 34/109 (31.19%), Postives = 58/109 (53.21%), Query Frame = 3
Query:  228 VDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIAR-KKPDTHVKEKILILIDTWQEAF 551
            +++AT + L   DW   +E+CD +  D   AK+ V  + KR+  RN+ VQL  L +   + +NCG  +H  ++ +     ++K+A  +   T VK KIL  +  W + F
Sbjct:   14 INKATDENLTSEDWGAIMEVCDRVATDANGAKEAVNSMIKRLAHRNANVQLYTLEVANALSQNCGKNMHRELSSRAFTDALLKLANDRNTHTQVKAKILERMKEWSDMF 122          
BLAST of CX287461 vs. ExPASy Swiss-Prot
Match: STAM2_CHICK (Signal transducing adapter molecule 2 OS=Gallus gallus GN=STAM2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.049e-11
Identity = 38/108 (35.19%), Postives = 56/108 (51.85%), Query Frame = 3
Query:  228 VDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAF 551
            V++AT++     DW + ++ICD +   P  AKD +K I +R+  +   V L ALTLL   + NCG I H+ V  ++   E   I   K    V EK+  L+  W E F
Sbjct:   13 VEKATNEHNNSEDWGLIMDICDKVGSTPNGAKDCLKAIMRRVNHKVPHVALQALTLLGACVSNCGRIFHLEVCSRDFATEARGII-NKAHGKVSEKLKTLMVEWSEEF 119          
BLAST of CX287461 vs. ExPASy Swiss-Prot
Match: HSE1_PHANO (Class E vacuolar protein-sorting machinery protein HSE1 OS=Phaeosphaeria nodorum GN=HSE1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.676e-11
Identity = 37/118 (31.36%), Postives = 64/118 (54.24%), Query Frame = 3
Query:  204 RAEMVNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTH--VKEKILILIDTWQEAF 551
            ++ + + +V +AT + L   +W   +++CD +      AKD V  + KR+  RN+ VQL  L L   + +NCG  +H  +A ++    M+++A  + +TH  VK KIL  +  W E F
Sbjct:    5 QSNIFDDVVVKATDENLTSENWEYILDVCDKVGSSDTGAKDAVAAMIKRLAHRNANVQLYTLELANALSQNCGIQMHKELASRSFTDAMLRLANDR-NTHQAVKAKILERMGEWSEMF 121          
BLAST of CX287461 vs. ExPASy Swiss-Prot
Match: VPS27_ASPTN (Vacuolar protein sorting-associated protein 27 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=vps27 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.565e-11
Identity = 40/120 (33.33%), Postives = 66/120 (55.00%), Query Frame = 3
Query:  207 AEMVNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKP---DTHVKEKILILIDTWQEAFGG 557
            A  ++  V+RATS  L   D A+N+EI D++     Q K+ ++ +K+R+ ++N  VQL  L L +T +KN G      +A +  +  +V + + +    +T VKEK+L LI  W  A  G
Sbjct:    8 ASPLDEQVERATSSSL--EDIALNLEISDLIRSKSVQPKEAMRSLKRRLENKNPNVQLATLKLTDTCVKNGGTHFLAEIASREFMDNLVSLLKTEGLQLNTEVKEKMLELIQDWAMAAQG 125          
BLAST of CX287461 vs. ExPASy Swiss-Prot
Match: STAM1_HUMAN (Signal transducing adapter molecule 1 OS=Homo sapiens GN=STAM PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 4.565e-11
Identity = 34/108 (31.48%), Postives = 57/108 (52.78%), Query Frame = 3
Query:  228 VDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAF 551
            V++ATS+M    DW + ++ICD +       KD ++ I +R+  ++  V + ALTLL   + NCG I H+ V  ++   E+  +   K    V EK+  L+  W + F
Sbjct:   13 VEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVL-NKGHPKVCEKLKALMVEWTDEF 119          
BLAST of CX287461 vs. ExPASy Swiss-Prot
Match: HSE1_MAGGR (Class E vacuolar protein-sorting machinery protein HSE1 OS=Magnaporthe grisea GN=HSE1 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 4.565e-11
Identity = 35/113 (30.97%), Postives = 62/113 (54.87%), Query Frame = 3
Query:  219 NSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTH--VKEKILILIDTWQEAF 551
            ++ + +AT + L   DW   +E+CD +  D   AK+ V+ + +R+  RN+ VQL  L +   + +NCG  +H  +A +     ++K+A ++ +TH  VK KIL     W + F
Sbjct:   11 DTAIAKATDENLTSEDWGAIMEVCDRVAGDDNGAKEAVQALIRRLAHRNANVQLYTLEVANALSQNCGKPMHRELASRAFTEALLKLANER-NTHNQVKAKILEGTKEWSDMF 122          
BLAST of CX287461 vs. ExPASy Swiss-Prot
Match: HSE1_ASPTN (Class E vacuolar protein-sorting machinery protein hse1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=hse1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.565e-11
Identity = 36/110 (32.73%), Postives = 60/110 (54.55%), Query Frame = 3
Query:  228 VDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTH--VKEKILILIDTWQEAF 551
            V +AT + L   +W   +++CD +  +   AKD V  + KR+  RN+ VQL  L L   + +NCG  +H  +A ++    ++++A  + +TH  VK KIL  +  W E F
Sbjct:   13 VAKATDENLTSENWEYILDVCDKVAAEESGAKDAVAALIKRLAHRNANVQLYTLELGNALAQNCGPKIHRELASRSFTDALLRLANDR-NTHQQVKAKILERMQEWTEMF 121          
BLAST of CX287461 vs. ExPASy Swiss-Prot
Match: YB0G_SCHPO (Probable ADP-ribosylation factor-binding protein C25H2.16c OS=Schizosaccharomyces pombe GN=SPBC25H2.16c PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.962e-11
Identity = 35/112 (31.25%), Postives = 62/112 (55.36%), Query Frame = 3
Query:  222 SMVDRATSDMLIGPDWAMNIEICDMLNHDPGQA-KDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTH---VKEKILILIDTWQE 545
            S++  AT      PD A+N++I D++N   G   ++    I +++  RN  V  LAL LL+  +KNCG    + +A K  L+E+V+   ++P +    ++  IL LI+ W++
Sbjct:   10 SLIQNATEPYAFEPDLAVNLDIADLINQTGGNLPREAAFAIVRKVNDRNPTVAYLALNLLDICVKNCGYAFRLQIASKEFLNELVRRFPERPPSRLNKIQVMILSLIEEWRK 121          
BLAST of CX287461 vs. ExPASy Swiss-Prot
Match: HSE1_NEOFI (Class E vacuolar protein-sorting machinery protein hse1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=hse1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.962e-11
Identity = 35/110 (31.82%), Postives = 60/110 (54.55%), Query Frame = 3
Query:  228 VDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTH--VKEKILILIDTWQEAF 551
            V +AT + L   +W   +++CD +  +   AKD V  + KR+  RN+ VQL  L L   + +NCG  +H  +A ++    ++++A  + +TH  VK KIL  +  W + F
Sbjct:   13 VAKATDENLTSENWEYILDVCDKVAAEESGAKDAVAAMIKRLAHRNANVQLYTLELANALAQNCGPKIHRELASRSFTDALLRLANDR-NTHQQVKPKILERMQEWAQMF 121          
The following BLAST results are available for this feature:
BLAST of CX287461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
HSE1_ASPNC1.201e-1132.73Class E vacuolar protein-sorting machinery protein... [more]
HSE1_NEUCR1.569e-1131.19Class E vacuolar protein-sorting machinery protein... [more]
STAM2_CHICK2.049e-1135.19Signal transducing adapter molecule 2 OS=Gallus ga... [more]
HSE1_PHANO2.676e-1131.36Class E vacuolar protein-sorting machinery protein... [more]
VPS27_ASPTN4.565e-1133.33Vacuolar protein sorting-associated protein 27 OS=... [more]
STAM1_HUMAN4.565e-1131.48Signal transducing adapter molecule 1 OS=Homo sapi... [more]
HSE1_MAGGR4.565e-1130.97Class E vacuolar protein-sorting machinery protein... [more]
HSE1_ASPTN4.565e-1132.73Class E vacuolar protein-sorting machinery protein... [more]
YB0G_SCHPO5.962e-1131.25Probable ADP-ribosylation factor-binding protein C... [more]
HSE1_NEOFI5.962e-1131.82Class E vacuolar protein-sorting machinery protein... [more]

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Properties
Property NameValue
Genbank descriptionC01009G09SK Veg1 Citrus clementina cDNA clone C01009G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287461 ID=CX287461; Name=CX287461; organism=Citrus clementina; type=EST; length=589bp
GTTTTAGAGAGAGAAAGTGGGAGAAAAAGAGAGATAATATCAATACTGTT
CGATTTAATTGATCGAGAAAGAGATAAATCTTTTCGTTACCGGAATATCC
GGTGGCATAACGGTAATTAGTTGCGATCTCGGAGCCGGAATCGGAGTGAT
CTTCTTGGAGAGGTGTTTGATTTGATTCGTTTGTTTGGTTGGGAGAGAGT
GAGAGAGCAGAGATGGTGAATTCAATGGTGGATAGAGCCACGAGCGACAT
GTTGATCGGCCCTGATTGGGCCATGAACATCGAGATCTGTGACATGCTCA
ATCACGACCCTGGGCAAGCAAAGGATGTTGTTAAAGGTATTAAAAAGCGT
ATTGGAAGTAGGAATTCAAAAGTTCAACTTCTTGCTTTAACACTGTTGGA
GACAATTATAAAGAATTGTGGGGATATTGTCCATATGCATGTTGCAGAGA
AAAATGTTCTTCATGAGATGGTGAAAATAGCCAGGAAAAAGCCCGACACT
CACGTCAAAGAGAAGATATTAATTCTAATAGATACTTGGCAAGAAGCTTT
CGGAGGACCTAGGGCAAGATATCCACAGTACTATGCGGC
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