CX287461

Overview
NameCX287461
Unique NameCX287461
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length589
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287461 vs. ExPASy Swiss-Prot
Match: VPS27_NEOFI (Vacuolar protein sorting-associated protein 27 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=vps27 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.787e-11
Identity = 39/118 (33.05%), Postives = 65/118 (55.08%), Query Frame = 3
Query:  213 MVNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKP---DTHVKEKILILIDTWQEAFGG 557
            +++  V+RATS  L   D A+N+EI D++     Q K+ ++ +K+R+ +RN  VQ+  L L +T +KN G      +A +  +  +V +   +    +T VKEK+L LI  W  A  G
Sbjct:   10 LLDEQVERATSSSL--EDIALNLEISDLIRSKSVQPKEAMRSLKRRLENRNPNVQIATLKLTDTCVKNGGSHFLAEIASREFMDNLVSLLTTEGAPLNTDVKEKMLELIQDWAMAAQG 125          
BLAST of CX287461 vs. ExPASy Swiss-Prot
Match: VPS27_ASPFU (Vacuolar protein sorting-associated protein 27 OS=Aspergillus fumigatus GN=vps27 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.787e-11
Identity = 39/117 (33.33%), Postives = 64/117 (54.70%), Query Frame = 3
Query:  216 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKP---DTHVKEKILILIDTWQEAFGG 557
            ++  V+RATS  L   D A+N+EI D++     Q K+ ++ +K+R+ +RN  VQ+  L L +T +KN G      +A +  +  +V +   +    +T VKEK+L LI  W  A  G
Sbjct:   11 LDEQVERATSSSL--EDMALNLEISDLIRSKSVQPKEAMRSLKRRLENRNPNVQIATLKLTDTCVKNGGSHFLAEIASREFMDNLVSLLTTEGAPLNTDVKEKMLELIQDWAMAAQG 125          
BLAST of CX287461 vs. ExPASy Swiss-Prot
Match: GGA2_YEAST (ADP-ribosylation factor-binding protein GGA2 OS=Saccharomyces cerevisiae GN=GGA2 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.787e-11
Identity = 37/110 (33.64%), Postives = 60/110 (54.55%), Query Frame = 3
Query:  228 VDRATSDMLIGPDWAMNIEICDMLNHDPGQA-KDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPD---THVKEKILILIDTWQE 545
            + RA    L  PD A+N++I D +N   G A +D    + K I +R S V + AL+LL+ ++KNCG   H+ ++ K  L+E+VK     P    + ++  IL  I+ W +
Sbjct:   30 IQRACRMSLAEPDLALNLDIADYINEKQGAAPRDAAIALAKLINNRESHVAIFALSLLDVLVKNCGYPFHLQISRKEFLNELVKRFPGHPPLRYSKIQRLILTAIEEWYQ 139          
The following BLAST results are available for this feature:
BLAST of CX287461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
VPS27_NEOFI7.787e-1133.05Vacuolar protein sorting-associated protein 27 OS=... [more]
VPS27_ASPFU7.787e-1133.33Vacuolar protein sorting-associated protein 27 OS=... [more]
GGA2_YEAST7.787e-1133.64ADP-ribosylation factor-binding protein GGA2 OS=Sa... [more]

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Properties
Property NameValue
Genbank descriptionC01009G09SK Veg1 Citrus clementina cDNA clone C01009G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287461 ID=CX287461; Name=CX287461; organism=Citrus clementina; type=EST; length=589bp
GTTTTAGAGAGAGAAAGTGGGAGAAAAAGAGAGATAATATCAATACTGTT
CGATTTAATTGATCGAGAAAGAGATAAATCTTTTCGTTACCGGAATATCC
GGTGGCATAACGGTAATTAGTTGCGATCTCGGAGCCGGAATCGGAGTGAT
CTTCTTGGAGAGGTGTTTGATTTGATTCGTTTGTTTGGTTGGGAGAGAGT
GAGAGAGCAGAGATGGTGAATTCAATGGTGGATAGAGCCACGAGCGACAT
GTTGATCGGCCCTGATTGGGCCATGAACATCGAGATCTGTGACATGCTCA
ATCACGACCCTGGGCAAGCAAAGGATGTTGTTAAAGGTATTAAAAAGCGT
ATTGGAAGTAGGAATTCAAAAGTTCAACTTCTTGCTTTAACACTGTTGGA
GACAATTATAAAGAATTGTGGGGATATTGTCCATATGCATGTTGCAGAGA
AAAATGTTCTTCATGAGATGGTGAAAATAGCCAGGAAAAAGCCCGACACT
CACGTCAAAGAGAAGATATTAATTCTAATAGATACTTGGCAAGAAGCTTT
CGGAGGACCTAGGGCAAGATATCCACAGTACTATGCGGC
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