CX287462

Overview
NameCX287462
Unique NameCX287462
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length560
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15452 contig Ccv1_Contig15452:26..585. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287462 vs. ExPASy Swiss-Prot
Match: CATA_LISSE (Catalase OS=Listeria seeligeri GN=kat PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 2.249e-49
Identity = 91/149 (61.07%), Postives = 114/149 (76.51%), Query Frame = 3
Query:  114 MTTNAGAPVWNDNHSLTVGSRGPVLLEDYHLVEKLAHFARERIPERVVHARGASAKGFFECTHDISHLTCADLFRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNWDLLGNSIPVFFIRDAIKFPDVIHAFKPNPKSH 560
            +TTN G P+ ++ +S+T G +GP LLEDY L+EKLAHF RER+PERVVHARGA A G F     +   T A   +  G +T V  RFSTVIH + SPETLRDPRGF+VKFYT EGN+D +GN++PVFFIRDAIKFPDVIH+ KP+P+++
Sbjct:    7 LTTNQGVPIGDNQNSMTAGLKGPTLLEDYVLIEKLAHFDRERVPERVVHARGAGAHGKFVTKKSMKKYTKAQFLQEEGTETEVFARFSTVIHGQHSPETLRDPRGFSVKFYTEEGNYDFVGNNLPVFFIRDAIKFPDVIHSLKPDPRTN 155          
BLAST of CX287462 vs. ExPASy Swiss-Prot
Match: CATA1_CAEEL (Peroxisomal catalase 1 OS=Caenorhabditis elegans GN=ctl-2 PE=2 SV=3)

HSP 1 Score: 191.43 bits (485), Expect = 2.487e-48
Identity = 88/149 (59.06%), Postives = 114/149 (76.51%), Query Frame = 3
Query:  114 MTTNAGAPVWNDNHSLTVGSRGPVLLEDYHLVEKLAHFARERIPERVVHARGASAKGFFECTHDISHLTCADLFRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNWDLLGNSIPVFFIRDAIKFPDVIHAFKPNPKSH 560
            +TT+ GAP+++    LT G RGP+L++D   ++++AHF RERIPERVVHA+GA A G+FE THDIS    AD+F   G QTP+++RFSTV  E GS +T RDPRGFA+KFYT EGNWDL+GN+ P+FFIRD I FP+ IH  K NP++H
Sbjct:   23 ITTSNGAPIYSKTAVLTAGRRGPMLMQDVVYMDEMAHFDRERIPERVVHAKGAGAHGYFEVTHDISKYCKADIFNKVGKQTPLLIRFSTVGGESGSADTARDPRGFAIKFYTEEGNWDLVGNNTPIFFIRDPIHFPNFIHTQKRNPQTH 171          
BLAST of CX287462 vs. ExPASy Swiss-Prot
Match: CATE_RHIME (Catalase C OS=Rhizobium meliloti GN=katE PE=2 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 3.248e-48
Identity = 91/150 (60.67%), Postives = 109/150 (72.67%), Query Frame = 3
Query:  102 NAPFMTTNAGAPVWNDNHSLTVGSRGPVLLEDYHLVEKLAHFARERIPERVVHARGASAKGFFECTHDISHLTCADLFRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNWDLLGNSIPVFFIRDAIKFPDVIHAFKPNP 551
            + P +TT  G PV +D +SL  G RGP L+ED+H  EK+ HF  ERIPERVVHARG    GFFE    ++  T ADLF+ PG +TP  VRFSTV   +GS +  RD RGFAVK YT+EGNWDL+GN+IPVFFI+DAIKFPDVIH+ KP P
Sbjct:   36 DTPVLTTAQGGPVADDQNSLRAGERGPTLIEDFHFREKIFHFDHERIPERVVHARGYGVHGFFETYESLAAYTRADLFQRPGERTPAFVRFSTVAGSKGSFDLARDVRGFAVKIYTKEGNWDLVGNNIPVFFIQDAIKFPDVIHSVKPEP 185          
BLAST of CX287462 vs. ExPASy Swiss-Prot
Match: CATA_DEIRA (Catalase OS=Deinococcus radiodurans GN=katA PE=1 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 4.242e-48
Identity = 93/154 (60.39%), Postives = 115/154 (74.68%), Query Frame = 3
Query:  114 MTTNAGAPVWNDNHSLTVGSRGPVLLEDYHLVEKLAHFARERIPERVVHARGASAKGFFECT-----HDISHLTCADLFRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNWDLLGNSIPVFFIRDAIKFPDVIHAFKPNPKSH 560
            +TT  G PV ++ +S TVGSRGP+ LE+Y  +EKL+HF RERIPERVVHARG  A G F  T       +S  T A LF+  G +TPV VRFSTV H   SPETLRDPRGFAVKFYT +GNWDL+GN++ +FFIRDA+KFPD+IH+ KP+P ++
Sbjct:   33 LTTRQGHPVHDNQNSRTVGSRGPMTLENYQFIEKLSHFDRERIPERVVHARGVGAHGVFRATGKVGDEPVSKYTRAKLFQEDGKETPVFVRFSTVGHGTHSPETLRDPRGFAVKFYTEDGNWDLVGNNLKIFFIRDALKFPDLIHSQKPSPTTN 186          
BLAST of CX287462 vs. ExPASy Swiss-Prot
Match: CATB_PSEAE (Catalase OS=Pseudomonas aeruginosa GN=katB PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 7.236e-48
Identity = 95/159 (59.75%), Postives = 117/159 (73.58%), Query Frame = 3
Query:   84 LPSTTHNAPFMTTNAGAPVWNDNHSLTVGSRGPVLLEDYHLVEKLAHFARERIPERVVHARGASAKGFFECTHDISHLTCADLFRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNWDLLGNSIPVFFIRDAIKFPDVIHAFKPNPKSH 560
            L S +  A  +T + GAPV ++ +S T G  G VLL+D  L++KL  F RERIPERVVHARG  A G F  + DIS L+ A +FR  G +TPV VRFS V+H   SPETLRDPRGFA KFYT +GNWDL+GN+ P FFIRDAIKFPD++HAFKP+P+S+
Sbjct:   23 LLSLSVQAATLTRDNGAPVGDNQNSQTAGPNGSVLLQDVQLLQKLQRFDRERIPERVVHARGTGAHGEFVASADISDLSMAKVFRK-GEKTPVFVRFSAVVHGNHSPETLRDPRGFATKFYTADGNWDLVGNNFPTFFIRDAIKFPDMVHAFKPDPRSN 180          
BLAST of CX287462 vs. ExPASy Swiss-Prot
Match: CATA_LACSK (Catalase OS=Lactobacillus sakei GN=katA PE=3 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 9.451e-48
Identity = 92/150 (61.33%), Postives = 114/150 (76.00%), Query Frame = 3
Query:  114 MTTNAGAPVWNDN-HSLTVGSRGPVLLEDYHLVEKLAHFARERIPERVVHARGASAKGFFECTHDISHLTCADLFRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNWDLLGNSIPVFFIRDAIKFPDVIHAFKPNPKSH 560
            +TTN G P W DN HS T G RGPVL++DY L+EKLAHF RERIPERVVHA+GA AKG+F+ T D+S  T A +F   G +TP+I RFS V  E G P+T RD RGFAVKFYT EGN+D++GN+ PVFF+ D +KFPD IH+ K +P++H
Sbjct:    5 LTTNEGQP-WADNQHSQTAGQRGPVLIQDYQLLEKLAHFNRERIPERVVHAKGAGAKGYFKVTKDMSAYTKAAVFSGVGKKTPLITRFSQVAGEAGYPDTYRDVRGFAVKFYTEEGNYDIVGNNTPVFFVNDPLKFPDFIHSQKRDPRTH 153          
BLAST of CX287462 vs. ExPASy Swiss-Prot
Match: CATE_BACSU (Catalase-2 OS=Bacillus subtilis GN=katE PE=3 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 1.612e-47
Identity = 90/153 (58.82%), Postives = 109/153 (71.24%), Query Frame = 3
Query:   93 TTHNAPFMTTNAGAPVWNDNHSLTVGSRGPVLLEDYHLVEKLAHFARERIPERVVHARGASAKGFFECTHDISHLTCADLFRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNWDLLGNSIPVFFIRDAIKFPDVIHAFKPNP 551
            T ++   MTTN G  V  D HSL  G RGP L+ED+H  EK+ HF  ERIPERVVHARG    GFF+    ++  T A   + P V+TPV VRFSTV   +GS +T+RD RGFA KFYT EGN+DL+GN+IPVFFI+DAIKFPD++HAFKP P
Sbjct:   23 TDNSGKKMTTNQGLRVSEDEHSLKAGVRGPTLMEDFHFREKMTHFDHERIPERVVHARGFGVHGFFQVYEPMTEYTRAKFLQDPSVKTPVFVRFSTVAGSKGSADTVRDARGFATKFYTEEGNYDLVGNNIPVFFIQDAIKFPDLVHAFKPEP 175          
BLAST of CX287462 vs. ExPASy Swiss-Prot
Match: CATA_BORPE (Catalase OS=Bordetella pertussis GN=katA PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.612e-47
Identity = 91/149 (61.07%), Postives = 113/149 (75.84%), Query Frame = 3
Query:  114 MTTNAGAPVWNDNHSLTVGSRGPVLLEDYHLVEKLAHFARERIPERVVHARGASAKGFFECTHDISHLTCADLFRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNWDLLGNSIPVFFIRDAIKFPDVIHAFKPNPKSH 560
            +TT AGAPV ++N+++T G RGP LL+D   +EKLAHF RERIPERVVHA+G+ A G F  THDIS  T A +F   G QTP+ +RFSTV  ERG+ +  RD RGFA+KFYT EGNWDL+GN+ PVFFIRD +KFPD IH  K +PK++
Sbjct:    9 LTTAAGAPVADNNNTMTAGPRGPALLQDVWFLEKLAHFDRERIPERVVHAKGSGAYGTFTVTHDISRYTRARIFAEVGKQTPLFLRFSTVAGERGAADAERDVRGFAIKFYTDEGNWDLVGNNTPVFFIRDPLKFPDFIHTQKRDPKTN 157          
BLAST of CX287462 vs. ExPASy Swiss-Prot
Match: CATA_BORPA (Catalase OS=Bordetella parapertussis GN=katA PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.612e-47
Identity = 91/149 (61.07%), Postives = 113/149 (75.84%), Query Frame = 3
Query:  114 MTTNAGAPVWNDNHSLTVGSRGPVLLEDYHLVEKLAHFARERIPERVVHARGASAKGFFECTHDISHLTCADLFRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNWDLLGNSIPVFFIRDAIKFPDVIHAFKPNPKSH 560
            +TT AGAPV ++N+++T G RGP LL+D   +EKLAHF RERIPERVVHA+G+ A G F  THDIS  T A +F   G QTP+ +RFSTV  ERG+ +  RD RGFA+KFYT EGNWDL+GN+ PVFFIRD +KFPD IH  K +PK++
Sbjct:    9 LTTAAGAPVADNNNTMTAGPRGPALLQDVWFLEKLAHFDRERIPERVVHAKGSGAYGTFTVTHDISRYTRARIFAEVGKQTPLFLRFSTVAGERGAADAERDVRGFAIKFYTDEGNWDLVGNNTPVFFIRDPLKFPDFIHTQKRDPKTN 157          
BLAST of CX287462 vs. ExPASy Swiss-Prot
Match: CATA_BORBR (Catalase OS=Bordetella bronchiseptica GN=katA PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.612e-47
Identity = 91/149 (61.07%), Postives = 113/149 (75.84%), Query Frame = 3
Query:  114 MTTNAGAPVWNDNHSLTVGSRGPVLLEDYHLVEKLAHFARERIPERVVHARGASAKGFFECTHDISHLTCADLFRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNWDLLGNSIPVFFIRDAIKFPDVIHAFKPNPKSH 560
            +TT AGAPV ++N+++T G RGP LL+D   +EKLAHF RERIPERVVHA+G+ A G F  THDIS  T A +F   G QTP+ +RFSTV  ERG+ +  RD RGFA+KFYT EGNWDL+GN+ PVFFIRD +KFPD IH  K +PK++
Sbjct:    9 LTTAAGAPVADNNNTMTAGPRGPALLQDVWFLEKLAHFDRERIPERVVHAKGSGAYGTFTVTHDISRYTRARIFAEVGKQTPLFLRFSTVAGERGAADAERDVRGFAIKFYTDEGNWDLVGNNTPVFFIRDPLKFPDFIHTQKRDPKTN 157          
The following BLAST results are available for this feature:
BLAST of CX287462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
CATA_LISSE2.249e-4961.07Catalase OS=Listeria seeligeri GN=kat PE=3 SV=1[more]
CATA1_CAEEL2.487e-4859.06Peroxisomal catalase 1 OS=Caenorhabditis elegans G... [more]
CATE_RHIME3.248e-4860.67Catalase C OS=Rhizobium meliloti GN=katE PE=2 SV=2[more]
CATA_DEIRA4.242e-4860.39Catalase OS=Deinococcus radiodurans GN=katA PE=1 S... [more]
CATB_PSEAE7.236e-4859.75Catalase OS=Pseudomonas aeruginosa GN=katB PE=3 SV... [more]
CATA_LACSK9.451e-4861.33Catalase OS=Lactobacillus sakei GN=katA PE=3 SV=2[more]
CATE_BACSU1.612e-4758.82Catalase-2 OS=Bacillus subtilis GN=katE PE=3 SV=2[more]
CATA_BORPE1.612e-4761.07Catalase OS=Bordetella pertussis GN=katA PE=1 SV=1[more]
CATA_BORPA1.612e-4761.07Catalase OS=Bordetella parapertussis GN=katA PE=3 ... [more]
CATA_BORBR1.612e-4761.07Catalase OS=Bordetella bronchiseptica GN=katA PE=3... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01009G10SK Veg1 Citrus clementina cDNA clone C01009G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287462 ID=CX287462; Name=CX287462; organism=Citrus clementina; type=EST; length=560bp
AACTCCACTTCTCCTTTCTTACGATAATAATAACAGTAGCAAAATCTTCA
GCAAGAAATATCGCCATGGATCCCTACAAATTGCTTCCGTCAACTACTCA
CAATGCCCCCTTTATGACTACAAATGCCGGCGCTCCTGTCTGGAACGACA
ATCACTCCTTGACTGTTGGAAGTAGAGGTCCTGTCCTTCTTGAGGATTAT
CATCTGGTGGAGAAACTAGCTCATTTTGCCAGGGAGAGGATTCCAGAACG
TGTCGTCCATGCTAGGGGAGCCAGTGCTAAGGGTTTCTTTGAGTGCACCC
ATGATATTTCTCACCTTACTTGTGCTGATCTTTTTCGAGCTCCAGGGGTT
CAGACACCTGTCATTGTTCGCTTCTCCACTGTTATCCATGAGCGGGGCAG
CCCTGAGACACTCAGGGATCCTCGAGGATTTGCAGTCAAGTTTTACACCA
GAGAGGGTAATTGGGATCTTCTGGGTAACAGTATCCCTGTTTTTTTCATC
CGTGATGCAATCAAATTCCCAGATGTGATCCATGCTTTTAAACCTAATCC
AAAGTCTCAC
back to top