CX287482

Overview
NameCX287482
Unique NameCX287482
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig378 contig Ccv1_Contig378:43..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: PRDX2_MOUSE (Peroxiredoxin-2 OS=Mus musculus GN=Prdx2 PE=1 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 8.823e-32
Identity = 66/100 (66.00%), Postives = 75/100 (75.00%), Query Frame = 2
Query:  317 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            +G +APDF A AV D  F  +KLSDY GK YV+LFFYPLDFTFVCPTEI AFSD   +F KL  E+LGVS DS F+HLAW+ T RK GGLG L  PL+AD
Sbjct:    8 IGKSAPDFTATAVVDGAFKEIKLSDYRGK-YVVLFFYPLDFTFVCPTEIIAFSDHAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLAD 106          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: PRDX2_PONAB (Peroxiredoxin-2 OS=Pongo abelii GN=PRDX2 PE=2 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 1.505e-31
Identity = 67/100 (67.00%), Postives = 75/100 (75.00%), Query Frame = 2
Query:  317 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            +G  APDF A AV D  F  VKLSDY GK YV+LFFYPLDFTFVCPTEI AFS+R  +F KL  E+LGVS DS F+HLAW+ T RK GGLG L  PL+AD
Sbjct:    8 IGKPAPDFKATAVVDGAFKEVKLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSNRAEDFHKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLAD 106          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: PRDX2_MACFA (Peroxiredoxin-2 OS=Macaca fascicularis GN=PRDX2 PE=2 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 1.505e-31
Identity = 67/100 (67.00%), Postives = 75/100 (75.00%), Query Frame = 2
Query:  317 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            +G  APDF A AV D  F  VKLSDY GK YV+LFFYPLDFTFVCPTEI AFS+R  +F KL  E+LGVS DS F+HLAW+ T RK GGLG L  PL+AD
Sbjct:    8 IGKPAPDFKATAVVDGAFKEVKLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLAD 106          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: PRDX2_HUMAN (Peroxiredoxin-2 OS=Homo sapiens GN=PRDX2 PE=1 SV=5)

HSP 1 Score: 135.961 bits (341), Expect = 1.505e-31
Identity = 67/100 (67.00%), Postives = 75/100 (75.00%), Query Frame = 2
Query:  317 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            +G  APDF A AV D  F  VKLSDY GK YV+LFFYPLDFTFVCPTEI AFS+R  +F KL  E+LGVS DS F+HLAW+ T RK GGLG L  PL+AD
Sbjct:    8 IGKPAPDFKATAVVDGAFKEVKLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLAD 106          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: PRDX_ASCSU (Peroxiredoxin OS=Ascaris suum PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.353e-31
Identity = 62/101 (61.39%), Postives = 78/101 (77.23%), Query Frame = 2
Query:  314 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            ++G  AP+F A AV D +F ++ LSDY GK YV+LFFYP+DFTFVCPTEI AFS+   EF+KL  E+L  STDS FSHLAW+ T RK GGLG++K P+I+D
Sbjct:    5 MIGKPAPEFTATAVVDGDFKSISLSDYKGK-YVVLFFYPMDFTFVCPTEIIAFSEHVGEFKKLGVEVLAASTDSQFSHLAWINTPRKQGGLGEMKIPIISD 104          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: PRDX2_RAT (Peroxiredoxin-2 OS=Rattus norvegicus GN=Prdx2 PE=1 SV=3)

HSP 1 Score: 134.42 bits (337), Expect = 4.379e-31
Identity = 65/100 (65.00%), Postives = 73/100 (73.00%), Query Frame = 2
Query:  317 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            +G  APDF   AV D  F  +KLSDY GK YV+LFFYPLDFTFVCPTEI AFSD   +F KL  E+LGVS DS F+HLAW+ T RK GGLG L  PL+AD
Sbjct:    8 IGKPAPDFTGTAVVDGAFKEIKLSDYRGK-YVVLFFYPLDFTFVCPTEIIAFSDHAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLAD 106          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: PRDX2_CRIGR (Peroxiredoxin-2 OS=Cricetulus griseus GN=PRDX2 PE=2 SV=3)

HSP 1 Score: 134.42 bits (337), Expect = 4.379e-31
Identity = 66/100 (66.00%), Postives = 74/100 (74.00%), Query Frame = 2
Query:  317 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            +G  APDF A AV D  F  VKLSDY GK YV+LFFYPLDFTFVCPTEI AFS+   +F KL  E+LGVS DS F+HLAW+ T RK GGLG L  PL+AD
Sbjct:    8 IGKPAPDFTATAVVDGAFKEVKLSDYRGK-YVVLFFYPLDFTFVCPTEIIAFSNHAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLAD 106          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: PRDX1_CHICK (Peroxiredoxin-1 OS=Gallus gallus GN=PRDX1 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.838e-30
Identity = 63/101 (62.38%), Postives = 77/101 (76.24%), Query Frame = 2
Query:  317 VGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            +G  APDF A AV  D +F ++KLSDY GK YV+ FFYPLDFTFVCPTEI A+SDR  EF+K+N EI+G S DS F HLAW+ T +K GGLG +K PL++D
Sbjct:    8 IGKPAPDFTATAVMPDGQFKDIKLSDYRGK-YVVFFFYPLDFTFVCPTEIIAYSDRADEFKKINCEIIGASVDSHFCHLAWINTPKKQGGLGTMKIPLVSD 107          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: PRDX1_GECJA (Peroxiredoxin-1 OS=Gecko japonicus GN=PRDX1 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.841e-30
Identity = 63/101 (62.38%), Postives = 75/101 (74.26%), Query Frame = 2
Query:  317 VGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            +G  APDF A AV  D +F  +KLSDY GK YV+LFFYPLDFTFVCPTEI AFSDR  EF K+N E++G S DS F HLAW+ T +K GGLG +  PL++D
Sbjct:    8 IGKLAPDFQATAVMPDGQFKEIKLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSDRSEEFRKINCEVIGASVDSHFCHLAWINTPKKQGGLGSMHIPLVSD 107          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: TDX1_BRUMA (Thioredoxin peroxidase 1 OS=Brugia malayi GN=TSA1 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.258e-30
Identity = 63/99 (63.64%), Postives = 77/99 (77.78%), Query Frame = 2
Query:  323 NTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKS-GGLGDLKYPLIAD 616
            N APDF+  AV + +F  + + DY GK ++ILFFYPLDFTFVCPTEITAFSDR  EF+KLNTE++  S DS FSHLAW+QT R   GGLGD+K P++AD
Sbjct:   37 NKAPDFSGTAVVNGDFKTISMKDYKGK-WLILFFYPLDFTFVCPTEITAFSDRCAEFQKLNTELIACSCDSHFSHLAWIQTPRSEVGGLGDMKIPVLAD 134          
The following BLAST results are available for this feature:
BLAST of CX287482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
PRDX2_MOUSE8.823e-3266.00Peroxiredoxin-2 OS=Mus musculus GN=Prdx2 PE=1 SV=3[more]
PRDX2_PONAB1.505e-3167.00Peroxiredoxin-2 OS=Pongo abelii GN=PRDX2 PE=2 SV=3[more]
PRDX2_MACFA1.505e-3167.00Peroxiredoxin-2 OS=Macaca fascicularis GN=PRDX2 PE... [more]
PRDX2_HUMAN1.505e-3167.00Peroxiredoxin-2 OS=Homo sapiens GN=PRDX2 PE=1 SV=5[more]
PRDX_ASCSU3.353e-3161.39Peroxiredoxin OS=Ascaris suum PE=2 SV=1[more]
PRDX2_RAT4.379e-3165.00Peroxiredoxin-2 OS=Rattus norvegicus GN=Prdx2 PE=1... [more]
PRDX2_CRIGR4.379e-3166.00Peroxiredoxin-2 OS=Cricetulus griseus GN=PRDX2 PE=... [more]
PRDX1_CHICK2.838e-3062.38Peroxiredoxin-1 OS=Gallus gallus GN=PRDX1 PE=1 SV=... [more]
PRDX1_GECJA4.841e-3062.38Peroxiredoxin-1 OS=Gecko japonicus GN=PRDX1 PE=2 S... [more]
TDX1_BRUMA8.258e-3063.64Thioredoxin peroxidase 1 OS=Brugia malayi GN=TSA1 ... [more]

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Properties
Property NameValue
Genbank descriptionC01010A08SK Veg1 Citrus clementina cDNA clone C01010A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287482 ID=CX287482; Name=CX287482; organism=Citrus clementina; type=EST; length=617bp
ATTTTGAGCAACAGATAGCCACACTTTGTTTTTCCCCGTTCGTTGACTCC
AGCTGAACAATAATACAACAACAAAAACAATGGCTTGCTCAGCTGCTTCT
GCTGCTGCCACGGCAACAGCCGCTCTCATTTCCTCTAACCCCAAGGCTTT
CTCTTCTTCCTCAATCTCCCCTTCTCAAAACCTAACCATTCCCCGCTCCT
TCTCCGGCCTCCGCAATCCCCTCCAGTCCCAGGTCCCCCGCCCCGTTTCT
CTTTCCCGCGGGTCCCGTTCTCGCAAGTCCTTCGTTGTCAAAGCATCCGT
TGAAATACCACCATTGGTGGGCAACACGGCACCTGATTTTGCTGCAGAGG
CTGTTTTCGATCAAGAGTTCATCAATGTCAAGCTTTCGGATTACATTGGG
AAGAAATATGTGATTCTCTTTTTCTACCCGTTGGACTTCACATTTGTTTG
CCCCACAGAAATCACTGCTTTCAGCGACCGATATACTGAATTTGAGAAGC
TAAACACAGAGATATTGGGTGTCTCAACCGACAGTGTGTTTTCACACTTG
GCATGGGTCCAAACAGACAGAAAGTCAGGTGGTCTTGGTGATTTGAAGTA
CCCACTAATTGCTGATA
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