CX287482

Overview
NameCX287482
Unique NameCX287482
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig378 contig Ccv1_Contig378:43..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: TDXH_PYRHO (Probable peroxiredoxin OS=Pyrococcus horikoshii GN=PH1217 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.854e-11
Identity = 35/82 (42.68%), Postives = 50/82 (60.98%), Query Frame = 2
Query:  377 VKLSDYIGK--KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            +KL DY  K  K+ ILF +P DFT VC TE      R  EF KL  E +G+S D VFSH+ W++  + +  + ++ +P+IAD
Sbjct:   20 IKLPDYFTKQGKWFILFSHPADFTPVCTTEFYGMQKRVEEFRKLGVEPIGLSVDQVFSHIKWIEWIKDNLSV-EIDFPVIAD 100          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: REHY_MAIZE (1-Cys peroxiredoxin PER1 OS=Zea mays GN=PER1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.854e-11
Identity = 35/108 (32.41%), Postives = 57/108 (52.78%), Query Frame = 2
Query:  317 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGG--------LGDLKYPLIAD 616
            +G+T P+   ++   +    +++ DY+G  Y I+F +P DFT VC TE+ A +    EFEK   ++LG+S D V SH  W +     GG           + +P++AD
Sbjct:    6 IGDTVPNLELDSTHGK----IRIHDYVGDGYAIIFSHPADFTPVCTTEMAAMAGYAKEFEKRGVKLLGISCDDVESHRQWTKDVEAYGGKQQQQQATTTKVTFPILAD 109          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: REHY_BROSE (Probable 1-Cys peroxiredoxin (Fragment) OS=Bromus secalinus PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.573e-11
Identity = 32/80 (40.00%), Postives = 47/80 (58.75%), Query Frame = 2
Query:  377 VKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            +++ DY+   YVILF +P DFT VC TE+ A ++   EFEK   ++LG+S D V SH  W +          + YP++AD
Sbjct:    6 IRIHDYVANGYVILFSHPGDFTPVCTTELAAMANYAKEFEKRGVKLLGISCDDVQSHKEWTKDIEAYKPGSKVTYPIMAD 85          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: TDXH_PYRKO (Probable peroxiredoxin OS=Pyrococcus kodakaraensis GN=TK0537 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 33/82 (40.24%), Postives = 52/82 (63.41%), Query Frame = 2
Query:  377 VKLSDYIGK--KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            +KL DY  +  K+ +LF +P DFT VC TE  A   R  +F +L  E +G+S D VFSH+ W++  +++ G  ++ +P+IAD
Sbjct:   20 IKLPDYFAEQGKWFVLFSHPADFTPVCTTEFYAMQKRVDQFRELGVEPIGLSVDQVFSHIKWMEWIKENLG-EEITFPVIAD 100          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: TDXH2_SULME (Probable peroxiredoxin 2 OS=Sulfolobus metallicus PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 32/77 (41.56%), Postives = 50/77 (64.94%), Query Frame = 2
Query:  389 DYIGK-KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            D  GK K++ LF +P DFT VC TE   FS  Y +F  L  +++G+S DSV+SH+ W++  ++  G+  + +P+IAD
Sbjct:   24 DIFGKGKWLFLFAHPADFTPVCTTEFVEFSKAYNDFANLGVQLVGLSVDSVYSHIEWLKDIQEKYGI-KVPFPVIAD 99          
The following BLAST results are available for this feature:
BLAST of CX287482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
TDXH_PYRHO3.854e-1142.68Probable peroxiredoxin OS=Pyrococcus horikoshii GN... [more]
REHY_MAIZE3.854e-1132.411-Cys peroxiredoxin PER1 OS=Zea mays GN=PER1 PE=2 ... [more]
REHY_BROSE6.573e-1140.00Probable 1-Cys peroxiredoxin (Fragment) OS=Bromus ... [more]
TDXH_PYRKO8.585e-1140.24Probable peroxiredoxin OS=Pyrococcus kodakaraensis... [more]
TDXH2_SULME8.585e-1141.56Probable peroxiredoxin 2 OS=Sulfolobus metallicus ... [more]

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Properties
Property NameValue
Genbank descriptionC01010A08SK Veg1 Citrus clementina cDNA clone C01010A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287482 ID=CX287482; Name=CX287482; organism=Citrus clementina; type=EST; length=617bp
ATTTTGAGCAACAGATAGCCACACTTTGTTTTTCCCCGTTCGTTGACTCC
AGCTGAACAATAATACAACAACAAAAACAATGGCTTGCTCAGCTGCTTCT
GCTGCTGCCACGGCAACAGCCGCTCTCATTTCCTCTAACCCCAAGGCTTT
CTCTTCTTCCTCAATCTCCCCTTCTCAAAACCTAACCATTCCCCGCTCCT
TCTCCGGCCTCCGCAATCCCCTCCAGTCCCAGGTCCCCCGCCCCGTTTCT
CTTTCCCGCGGGTCCCGTTCTCGCAAGTCCTTCGTTGTCAAAGCATCCGT
TGAAATACCACCATTGGTGGGCAACACGGCACCTGATTTTGCTGCAGAGG
CTGTTTTCGATCAAGAGTTCATCAATGTCAAGCTTTCGGATTACATTGGG
AAGAAATATGTGATTCTCTTTTTCTACCCGTTGGACTTCACATTTGTTTG
CCCCACAGAAATCACTGCTTTCAGCGACCGATATACTGAATTTGAGAAGC
TAAACACAGAGATATTGGGTGTCTCAACCGACAGTGTGTTTTCACACTTG
GCATGGGTCCAAACAGACAGAAAGTCAGGTGGTCTTGGTGATTTGAAGTA
CCCACTAATTGCTGATA
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