CX287482

Overview
NameCX287482
Unique NameCX287482
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig378 contig Ccv1_Contig378:43..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: YKUU_BACSU (Thioredoxin-like protein ykuU OS=Bacillus subtilis GN=ykuU PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.098e-29
Identity = 62/103 (60.19%), Postives = 76/103 (73.79%), Query Frame = 2
Query:  314 LVGNTAPDFAAEAVF-DQEFINVKLSDYI-GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            +VG  AP F  EAV   +EF  V L + +   K+ +LFFYP+DFTFVCPTEITA SDRY EFE L+ E++GVSTD++ +HLAW+ TDRK  GLG LKYPL AD
Sbjct:    5 MVGKQAPRFEMEAVLASKEFGKVSLEENMKNDKWTVLFFYPMDFTFVCPTEITAMSDRYDEFEDLDAEVIGVSTDTIHTHLAWINTDRKENGLGQLKYPLAAD 107          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: TDX_CYNPY (Peroxiredoxin OS=Cynops pyrrhogaster PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.352e-29
Identity = 62/101 (61.39%), Postives = 74/101 (73.27%), Query Frame = 2
Query:  317 VGNTAPDFAAEAVFDQ-EFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            +G  AP+F A+AV    EF ++KL+DY GK YV+ FFYPLDFTFVCPTEI AFSDR  EF K+N E++  S DS F HLAW  T RK GGLG +K PL+AD
Sbjct:    8 IGKPAPEFQAKAVMPGGEFKDIKLADYRGK-YVVFFFYPLDFTFVCPTEIIAFSDRAEEFRKINCELIAASVDSHFCHLAWTNTSRKEGGLGSMKIPLVAD 107          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: PRDX1_DROME (Peroxiredoxin 1 OS=Drosophila melanogaster GN=Jafrac1 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.352e-29
Identity = 61/102 (59.80%), Postives = 75/102 (73.53%), Query Frame = 2
Query:  311 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            P +   AP FA  AV +  F ++KLSDY GK Y++LFFYPLDFTFVCPTEI AFS+   EF K+N E++G STDS F+HLAW+ T RK GGLG +  PL+AD
Sbjct:    2 PQLQKPAPAFAGTAVVNGVFKDIKLSDYKGK-YLVLFFYPLDFTFVCPTEIIAFSESAAEFRKINCEVIGCSTDSQFTHLAWINTPRKQGGLGSMDIPLLAD 102          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: PRDX1_HUMAN (Peroxiredoxin-1 OS=Homo sapiens GN=PRDX1 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 9.130e-29
Identity = 61/101 (60.40%), Postives = 76/101 (75.25%), Query Frame = 2
Query:  317 VGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            +G+ AP+F A AV  D +F ++ LSDY GK YV+ FFYPLDFTFVCPTEI AFSDR  EF+KLN +++G S DS F HLAWV T +K GGLG +  PL++D
Sbjct:    8 IGHPAPNFKATAVMPDGQFKDISLSDYKGK-YVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNCQVIGASVDSHFCHLAWVNTPKKQGGLGPMNIPLVSD 107          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: PRDX1_RAT (Peroxiredoxin-1 OS=Rattus norvegicus GN=Prdx1 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.557e-28
Identity = 60/101 (59.41%), Postives = 75/101 (74.26%), Query Frame = 2
Query:  317 VGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            +G+ AP F A AV  D +F ++ LSDY GK YV+ FFYPLDFTFVCPTEI AFSDR  EF+KLN +++G S DS F HLAW+ T +K GGLG +  PL++D
Sbjct:    8 IGHPAPSFKATAVMPDGQFKDISLSDYKGK-YVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLVSD 107          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: PRDX1_MYOLU (Peroxiredoxin-1 OS=Myotis lucifugus GN=PRDX1 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.034e-28
Identity = 59/101 (58.42%), Postives = 76/101 (75.25%), Query Frame = 2
Query:  317 VGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            +G+ AP+F A AV  D +F ++ LSDY GK YV+ FFYPLDFTFVCPTEI AFSDR  EF+K+N +++G S DS F HLAW+ T +K GGLG +  PL++D
Sbjct:    8 IGHPAPNFKATAVMPDGQFKDISLSDYKGK-YVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKINCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLVSD 107          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: PRDX1_BOVIN (Peroxiredoxin-1 OS=Bos taurus GN=PRDX1 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.656e-28
Identity = 60/101 (59.41%), Postives = 75/101 (74.26%), Query Frame = 2
Query:  317 VGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            +G+ AP F A AV  D +F ++ L+DY GK YV+ FFYPLDFTFVCPTEI AFSDR  EF+KLN +++G S DS F HLAW+ T +K GGLG +  PLI+D
Sbjct:    8 IGHRAPQFKATAVMPDGQFKDISLADYKGK-YVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISD 107          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: PRDX1_MOUSE (Peroxiredoxin-1 OS=Mus musculus GN=Prdx1 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.918e-28
Identity = 60/101 (59.41%), Postives = 75/101 (74.26%), Query Frame = 2
Query:  317 VGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            +G  AP+F A AV  D +F ++ LS+Y GK YV+ FFYPLDFTFVCPTEI AFSDR  EF+KLN +++G S DS F HLAW+ T +K GGLG +  PLI+D
Sbjct:    8 IGYPAPNFKATAVMPDGQFKDISLSEYKGK-YVVFFFYPLDFTFVCPTEIIAFSDRADEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISD 107          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: TDX_ONCMY (Peroxiredoxin OS=Oncorhynchus mykiss PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.729e-28
Identity = 60/101 (59.41%), Postives = 73/101 (72.28%), Query Frame = 2
Query:  317 VGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            +G+ AP F A+AV  D +F ++ +SDY GK YV+ FFYPLDFTFVCPTEI AFSD   EF K+  E++G S DS F HLAW  T RK GGLG +K PL+AD
Sbjct:    8 IGHLAPGFTAKAVMPDGQFKDISMSDYRGK-YVVFFFYPLDFTFVCPTEIIAFSDAAEEFRKIGCEVIGASVDSHFCHLAWTNTPRKHGGLGAMKIPLVAD 107          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: PRDX1_CRIGR (Peroxiredoxin-1 OS=Cricetulus griseus GN=PRDX1 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.722e-27
Identity = 59/101 (58.42%), Postives = 75/101 (74.26%), Query Frame = 2
Query:  317 VGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            +G  AP+F A AV  D +F ++ LS+Y GK YV+ FFYPLDFTFVCPTEI AFSDR  EF+KLN +++G S DS F HLAW+ T +K GGLG +  PL++D
Sbjct:    8 IGYPAPNFKATAVMPDGQFRDICLSEYRGK-YVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLVSD 107          
The following BLAST results are available for this feature:
BLAST of CX287482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
YKUU_BACSU4.098e-2960.19Thioredoxin-like protein ykuU OS=Bacillus subtilis... [more]
TDX_CYNPY5.352e-2961.39Peroxiredoxin OS=Cynops pyrrhogaster PE=2 SV=1[more]
PRDX1_DROME5.352e-2959.80Peroxiredoxin 1 OS=Drosophila melanogaster GN=Jafr... [more]
PRDX1_HUMAN9.130e-2960.40Peroxiredoxin-1 OS=Homo sapiens GN=PRDX1 PE=1 SV=1[more]
PRDX1_RAT1.557e-2859.41Peroxiredoxin-1 OS=Rattus norvegicus GN=Prdx1 PE=1... [more]
PRDX1_MYOLU2.034e-2858.42Peroxiredoxin-1 OS=Myotis lucifugus GN=PRDX1 PE=1 ... [more]
PRDX1_BOVIN2.656e-2859.41Peroxiredoxin-1 OS=Bos taurus GN=PRDX1 PE=2 SV=1[more]
PRDX1_MOUSE5.918e-2859.41Peroxiredoxin-1 OS=Mus musculus GN=Prdx1 PE=1 SV=1[more]
TDX_ONCMY7.729e-2859.41Peroxiredoxin OS=Oncorhynchus mykiss PE=2 SV=1[more]
PRDX1_CRIGR1.722e-2758.42Peroxiredoxin-1 OS=Cricetulus griseus GN=PRDX1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC01010A08SK Veg1 Citrus clementina cDNA clone C01010A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287482 ID=CX287482; Name=CX287482; organism=Citrus clementina; type=EST; length=617bp
ATTTTGAGCAACAGATAGCCACACTTTGTTTTTCCCCGTTCGTTGACTCC
AGCTGAACAATAATACAACAACAAAAACAATGGCTTGCTCAGCTGCTTCT
GCTGCTGCCACGGCAACAGCCGCTCTCATTTCCTCTAACCCCAAGGCTTT
CTCTTCTTCCTCAATCTCCCCTTCTCAAAACCTAACCATTCCCCGCTCCT
TCTCCGGCCTCCGCAATCCCCTCCAGTCCCAGGTCCCCCGCCCCGTTTCT
CTTTCCCGCGGGTCCCGTTCTCGCAAGTCCTTCGTTGTCAAAGCATCCGT
TGAAATACCACCATTGGTGGGCAACACGGCACCTGATTTTGCTGCAGAGG
CTGTTTTCGATCAAGAGTTCATCAATGTCAAGCTTTCGGATTACATTGGG
AAGAAATATGTGATTCTCTTTTTCTACCCGTTGGACTTCACATTTGTTTG
CCCCACAGAAATCACTGCTTTCAGCGACCGATATACTGAATTTGAGAAGC
TAAACACAGAGATATTGGGTGTCTCAACCGACAGTGTGTTTTCACACTTG
GCATGGGTCCAAACAGACAGAAAGTCAGGTGGTCTTGGTGATTTGAAGTA
CCCACTAATTGCTGATA
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