CX287482

Overview
NameCX287482
Unique NameCX287482
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig378 contig Ccv1_Contig378:43..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: PRDX3_PONAB (Thioredoxin-dependent peroxide reductase, mitochondrial OS=Pongo abelii GN=PRDX3 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.010e-27
Identity = 62/122 (50.82%), Postives = 80/122 (65.57%), Query Frame = 2
Query:  251 LSRGSRSRKSFVVKASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            L  GS   K F   +S   P +  + AP F   AV + EF ++ L D+ GK Y++LFFYPLDFTFVCPTEI AFSD+  EF  +N E++ VS DS FSHLAW+ T RK+GGLG +   L++D
Sbjct:   44 LCSGSSQAKLFSTSSSYHAPAVTQH-APYFKGTAVVNGEFKDLSLDDFKGK-YLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSD 163          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: PRDX3_HUMAN (Thioredoxin-dependent peroxide reductase, mitochondrial OS=Homo sapiens GN=PRDX3 PE=1 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 5.010e-27
Identity = 62/122 (50.82%), Postives = 80/122 (65.57%), Query Frame = 2
Query:  251 LSRGSRSRKSFVVKASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            L  GS   K F   +S   P +  + AP F   AV + EF ++ L D+ GK Y++LFFYPLDFTFVCPTEI AFSD+  EF  +N E++ VS DS FSHLAW+ T RK+GGLG +   L++D
Sbjct:   44 LCSGSSQAKLFSTSSSCHAPAVTQH-APYFKGTAVVNGEFKDLSLDDFKGK-YLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSD 163          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: PRDX4_HUMAN (Peroxiredoxin-4 OS=Homo sapiens GN=PRDX4 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.543e-27
Identity = 55/100 (55.00%), Postives = 71/100 (71.00%), Query Frame = 2
Query:  317 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            +   AP +   AV D EF  +KL+DY GK Y++ FFYPLDFTFVCPTEI AF DR  EF  +NTE++  S DS F+HLAW+ T R+ GGLG ++ PL++D
Sbjct:   81 ISKPAPYWEGTAVIDGEFKELKLTDYRGK-YLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSD 179          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: TDX2_BRUMA (Thioredoxin peroxidase 2 OS=Brugia malayi GN=tsa-2 PE=2 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.116e-26
Identity = 56/99 (56.57%), Postives = 71/99 (71.72%), Query Frame = 2
Query:  317 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIA 613
            +G  AP+F   AV + +F  + L  + GK YV+L FYPLDFTFVCPTEI AFSDR  EF++L+  ++  STDS FSHLAWV TDRK GGLG +  P++A
Sbjct:   10 IGQPAPNFKTTAVVNGDFKEISLGQFKGK-YVVLLFYPLDFTFVCPTEIIAFSDRIAEFKQLDVAVMACSTDSHFSHLAWVNTDRKMGGLGQMNIPILA 107          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: PRDX4_BOVIN (Peroxiredoxin-4 OS=Bos taurus GN=PRDX4 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.458e-26
Identity = 55/100 (55.00%), Postives = 70/100 (70.00%), Query Frame = 2
Query:  317 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            +   AP +   AV + EF  +KL+DY GK Y++ FFYPLDFTFVCPTEI AF DR  EF  +NTE++  S DS F+HLAW+ T R+ GGLG +  PL+AD
Sbjct:   84 ISKPAPYWEGTAVINGEFKELKLTDYRGK-YLVFFFYPLDFTFVCPTEIIAFGDRIDEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGSINIPLLAD 182          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: PRDX4_RAT (Peroxiredoxin-4 OS=Rattus norvegicus GN=Prdx4 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.904e-26
Identity = 54/100 (54.00%), Postives = 72/100 (72.00%), Query Frame = 2
Query:  317 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            +   AP +   AV + EF  +KL+DY GK Y++ FFYPLDFTFVCPTEI AF DR  EF+ +NTE++  S DS F+HLAW+ T R+ GGLG ++ PL++D
Sbjct:   83 ISKPAPYWEGTAVINGEFKELKLTDYRGK-YLVFFFYPLDFTFVCPTEIIAFGDRIEEFKSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSD 181          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: PRDX4_MOUSE (Peroxiredoxin-4 OS=Mus musculus GN=Prdx4 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.904e-26
Identity = 54/100 (54.00%), Postives = 72/100 (72.00%), Query Frame = 2
Query:  317 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            +   AP +   AV + EF  +KL+DY GK Y++ FFYPLDFTFVCPTEI AF DR  EF+ +NTE++  S DS F+HLAW+ T R+ GGLG ++ PL++D
Sbjct:   84 ISKPAPYWEGTAVINGEFKELKLTDYRGK-YLVFFFYPLDFTFVCPTEIIAFGDRIEEFKSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSD 182          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: PRDX3_MOUSE (Thioredoxin-dependent peroxide reductase, mitochondrial OS=Mus musculus GN=Prdx3 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.486e-26
Identity = 59/121 (48.76%), Postives = 80/121 (66.12%), Query Frame = 2
Query:  254 SRGSRSRKSFVVKASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            S  ++ + +F   +S   P +  + AP F   AV + EF  + L D+ GK Y++LFFYPLDFTFVCPTEI AFSD+  EF  +N E++ VS DS FSHLAW+ T RK+GGLG +   L++D
Sbjct:   46 SASAQGKSAFSTSSSFHTPAVTQH-APYFKGTAVVNGEFKELSLDDFKGK-YLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNITLLSD 164          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: PRDX3_BOVIN (Thioredoxin-dependent peroxide reductase, mitochondrial OS=Bos taurus GN=PRDX3 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 2.486e-26
Identity = 62/123 (50.41%), Postives = 78/123 (63.41%), Query Frame = 2
Query:  248 SLSRGSRSRKSFVVKASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            +L  GS   K     +S    P V   AP F   AV   EF  + L D+ GK Y++LFFYPLDFTFVCPTEI AFSD+ +EF  +N E++ VS DS FSHLAW+ T RK+GGLG +   L++D
Sbjct:   43 ALWSGSDQAKFAFSTSSSYHAPAVTQHAPYFKGTAVVSGEFKEISLDDFKGK-YLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSD 164          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: PRDX3_RAT (Thioredoxin-dependent peroxide reductase, mitochondrial OS=Rattus norvegicus GN=Prdx3 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 3.247e-26
Identity = 57/102 (55.88%), Postives = 71/102 (69.61%), Query Frame = 2
Query:  311 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            P V   AP F   AV + EF  + L D+ GK Y++LFFYPLDFTFVCPTEI AFSD+  EF  +N E++ VS DS FSHLAW+ T RK+GGLG +   L++D
Sbjct:   64 PAVTQHAPHFKGTAVVNGEFKELSLDDFKGK-YLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNITLLSD 164          
The following BLAST results are available for this feature:
BLAST of CX287482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
PRDX3_PONAB5.010e-2750.82Thioredoxin-dependent peroxide reductase, mitochon... [more]
PRDX3_HUMAN5.010e-2750.82Thioredoxin-dependent peroxide reductase, mitochon... [more]
PRDX4_HUMAN6.543e-2755.00Peroxiredoxin-4 OS=Homo sapiens GN=PRDX4 PE=1 SV=1[more]
TDX2_BRUMA1.116e-2656.57Thioredoxin peroxidase 2 OS=Brugia malayi GN=tsa-2... [more]
PRDX4_BOVIN1.458e-2655.00Peroxiredoxin-4 OS=Bos taurus GN=PRDX4 PE=2 SV=1[more]
PRDX4_RAT1.904e-2654.00Peroxiredoxin-4 OS=Rattus norvegicus GN=Prdx4 PE=2... [more]
PRDX4_MOUSE1.904e-2654.00Peroxiredoxin-4 OS=Mus musculus GN=Prdx4 PE=1 SV=1[more]
PRDX3_MOUSE2.486e-2648.76Thioredoxin-dependent peroxide reductase, mitochon... [more]
PRDX3_BOVIN2.486e-2650.41Thioredoxin-dependent peroxide reductase, mitochon... [more]
PRDX3_RAT3.247e-2655.88Thioredoxin-dependent peroxide reductase, mitochon... [more]

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Properties
Property NameValue
Genbank descriptionC01010A08SK Veg1 Citrus clementina cDNA clone C01010A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287482 ID=CX287482; Name=CX287482; organism=Citrus clementina; type=EST; length=617bp
ATTTTGAGCAACAGATAGCCACACTTTGTTTTTCCCCGTTCGTTGACTCC
AGCTGAACAATAATACAACAACAAAAACAATGGCTTGCTCAGCTGCTTCT
GCTGCTGCCACGGCAACAGCCGCTCTCATTTCCTCTAACCCCAAGGCTTT
CTCTTCTTCCTCAATCTCCCCTTCTCAAAACCTAACCATTCCCCGCTCCT
TCTCCGGCCTCCGCAATCCCCTCCAGTCCCAGGTCCCCCGCCCCGTTTCT
CTTTCCCGCGGGTCCCGTTCTCGCAAGTCCTTCGTTGTCAAAGCATCCGT
TGAAATACCACCATTGGTGGGCAACACGGCACCTGATTTTGCTGCAGAGG
CTGTTTTCGATCAAGAGTTCATCAATGTCAAGCTTTCGGATTACATTGGG
AAGAAATATGTGATTCTCTTTTTCTACCCGTTGGACTTCACATTTGTTTG
CCCCACAGAAATCACTGCTTTCAGCGACCGATATACTGAATTTGAGAAGC
TAAACACAGAGATATTGGGTGTCTCAACCGACAGTGTGTTTTCACACTTG
GCATGGGTCCAAACAGACAGAAAGTCAGGTGGTCTTGGTGATTTGAAGTA
CCCACTAATTGCTGATA
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