CX287482

Overview
NameCX287482
Unique NameCX287482
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig378 contig Ccv1_Contig378:43..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: TDX1_CAEEL (Probable peroxiredoxin prdx-3 OS=Caenorhabditis elegans GN=prdx-3 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 9.448e-26
Identity = 60/117 (51.28%), Postives = 76/117 (64.96%), Query Frame = 2
Query:  269 SRKSFVVKASVEIPPL-VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            +R+    +A + + PL   NT P F   AV D +F  +   DY GK ++++FFYPLDFTFVCPTEI A+ DR  EF  L  E++  S DS FSHLAWV T RK GGLGD+  PL+AD
Sbjct:   18 TRQLSTSRALLSLRPLGPKNTVPAFKGTAVVDGDFKVISDQDYKGK-WLVMFFYPLDFTFVCPTEIIAYGDRANEFRSLGAEVVACSCDSHFSHLAWVNTPRKDGGLGDMDIPLLAD 133          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: YCF42_ODOSI (Putative peroxiredoxin ycf42 OS=Odontella sinensis GN=ycf42 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.612e-25
Identity = 53/102 (51.96%), Postives = 72/102 (70.59%), Query Frame = 2
Query:  311 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            P +G T P+F    V+ +    ++LSDY GKKYVILFFYP +FT + PTE+   SDR +EF KL+T+IL +S DS FSHL ++  +R+ GGL DL YPL++D
Sbjct:    5 PKIGKTPPNFLTIGVYKKRLGKIRLSDYRGKKYVILFFYPANFTAISPTELMLLSDRISEFRKLSTQILAISVDSPFSHLQYLLCNREEGGLEDLNYPLVSD 106          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: TDX_FASHE (Thioredoxin peroxidase OS=Fasciola hepatica PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.105e-25
Identity = 55/96 (57.29%), Postives = 71/96 (73.96%), Query Frame = 2
Query:  329 APDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            AP+F+ +AV  +EF  + LSDY GK +VIL FYPLDFTFVCPTEI A SD+  +F + N  ++  STDSV+SHL W + DRK GG+G L +PL+AD
Sbjct:    8 APNFSGQAVVGKEFETISLSDYKGK-WVILAFYPLDFTFVCPTEIIAISDQMEQFAQRNCAVIFCSTDSVYSHLQWTKMDRKVGGIGQLNFPLLAD 102          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: TDX_ECHGR (Thioredoxin peroxidase OS=Echinococcus granulosus GN=TPX PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.124e-25
Identity = 55/101 (54.46%), Postives = 70/101 (69.31%), Query Frame = 2
Query:  314 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            +VG  AP F  +A+ D E  +V LSDY GK YVILFFYP+DFTFVCPTEI AF+DR  EF +   ++L  STDS + HLAW    RK GG+  ++ P++AD
Sbjct:    4 VVGKLAPSFTCKALVDGELKDVSLSDYRGK-YVILFFYPMDFTFVCPTEIIAFNDRADEFHQRGCQLLACSTDSGYCHLAWNNVSRKEGGVQGMRIPMLAD 103          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: TSA1_SCHPO (Peroxiredoxin tpx1 OS=Schizosaccharomyces pombe GN=tpx1 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.039e-24
Identity = 54/100 (54.00%), Postives = 71/100 (71.00%), Query Frame = 2
Query:  317 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            +G  APDF   AV +  F  +KL+DY GK +V L FYPLDFTFVCPTEI AFS+  ++F + N +++  STDS +SHLA++ T RK GGLG +  PL+AD
Sbjct:    5 IGKPAPDFKGTAVVNGAFEEIKLADYKGK-WVFLGFYPLDFTFVCPTEIVAFSEAASKFAERNAQVILTSTDSEYSHLAFINTPRKEGGLGGINIPLLAD 103          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: R20K_CLOPA (Putative peroxiredoxin in rubredoxin operon OS=Clostridium pasteurianum PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.155e-23
Identity = 55/103 (53.40%), Postives = 69/103 (66.99%), Query Frame = 2
Query:  314 LVGNTAPDFAAEAVFD--QEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            LVG  AP+F  +AV    + F  VKL DY GK ++++FFYPLDFTFVCPTEIT FS R  EF  L  E+L VS DS +SH  W+  D K GGLG + +P+ +D
Sbjct:    4 LVGKPAPEFEMKAVKGDGRGFTEVKLGDYKGK-WLVMFFYPLDFTFVCPTEITGFSKRAEEFRDLKAELLAVSCDSQYSHETWINQDIKQGGLGKINFPIASD 105          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: TDX_TRYBR (Thioredoxin peroxidase OS=Trypanosoma brucei rhodesiense PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.277e-22
Identity = 52/101 (51.49%), Postives = 66/101 (65.35%), Query Frame = 2
Query:  317 VGNTAPDFAAEAVFDQ-EFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            + + AP F   A+     F  V L+ Y GK +V+LFFYPLDFTFVCPTEI  FSDR  EF  ++ E++  S DS FSHLAW   +RK GGLG +  P++AD
Sbjct:    8 LNHPAPHFNEVALMPNGTFKKVDLASYRGK-WVVLFFYPLDFTFVCPTEICQFSDRVKEFNDVDCEVIACSMDSEFSHLAWTNVERKKGGLGTMNIPILAD 107          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: PRDX2_PIG (Peroxiredoxin-2 (Fragment) OS=Sus scrofa GN=PRDX2 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.145e-21
Identity = 47/67 (70.15%), Postives = 52/67 (77.61%), Query Frame = 2
Query:  416 LFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            LFFYPLDFTFVCPTEI AFSDR  EF +L  E+LGVS D   +HLAW+ T RK GGLG LK PL+AD
Sbjct:    1 LFFYPLDFTFVCPTEIIAFSDRAEEFHQLGCEVLGVSVDXQXTHLAWINTPRKEGGLGPLKIPLLAD 67          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: CR29_ENTHI (Putative peroxiredoxin OS=Entamoeba histolytica PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 3.477e-20
Identity = 45/101 (44.55%), Postives = 69/101 (68.32%), Query Frame = 2
Query:  317 VGNTAPDFAAEAVFDQEFIN-VKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            +G  AP+F A A      I  + +++Y GK YV+L FYPLD+TFVCPTE+  +S+   + +++N E++GVS DSV+ H AW + D+  GG+G L +PL++D
Sbjct:   43 IGKEAPEFKAPAYCPCGSIKEIDINEYRGK-YVVLLFYPLDWTFVCPTEMIGYSELAGQLKEINCEVIGVSVDSVYCHQAWCEADKSKGGVGKLTFPLVSD 142          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: TSAA_BUCAP (Probable peroxiredoxin OS=Buchnera aphidicola subsp. Schizaphis graminum GN=BUsg_176 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.747e-20
Identity = 47/103 (45.63%), Postives = 66/103 (64.08%), Query Frame = 2
Query:  314 LVGNTAPDFAAEAVFDQEFI--NVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            LV   AP+F A A+     I  N  L  Y   +  +LFF+P+DFTFVCP+EI  F+  +  FEK N +I+GVS DSVF H AW  T  ++GG+G +K+P+++D
Sbjct:    3 LVTQKAPNFIAPAILKNGKIMNNFDLKKYSNGQITVLFFWPMDFTFVCPSEIIEFNKTFEAFEKRNVKIVGVSIDSVFVHQAWQNTFPENGGIGKIKFPMVSD 105          
The following BLAST results are available for this feature:
BLAST of CX287482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
TDX1_CAEEL9.448e-2651.28Probable peroxiredoxin prdx-3 OS=Caenorhabditis el... [more]
YCF42_ODOSI1.612e-2551.96Putative peroxiredoxin ycf42 OS=Odontella sinensis... [more]
TDX_FASHE2.105e-2557.29Thioredoxin peroxidase OS=Fasciola hepatica PE=2 S... [more]
TDX_ECHGR6.124e-2554.46Thioredoxin peroxidase OS=Echinococcus granulosus ... [more]
TSA1_SCHPO3.039e-2454.00Peroxiredoxin tpx1 OS=Schizosaccharomyces pombe GN... [more]
R20K_CLOPA1.155e-2353.40Putative peroxiredoxin in rubredoxin operon OS=Clo... [more]
TDX_TRYBR8.277e-2251.49Thioredoxin peroxidase OS=Trypanosoma brucei rhode... [more]
PRDX2_PIG3.145e-2170.15Peroxiredoxin-2 (Fragment) OS=Sus scrofa GN=PRDX2 ... [more]
CR29_ENTHI3.477e-2044.55Putative peroxiredoxin OS=Entamoeba histolytica PE... [more]
TSAA_BUCAP7.747e-2045.63Probable peroxiredoxin OS=Buchnera aphidicola subs... [more]

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Properties
Property NameValue
Genbank descriptionC01010A08SK Veg1 Citrus clementina cDNA clone C01010A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287482 ID=CX287482; Name=CX287482; organism=Citrus clementina; type=EST; length=617bp
ATTTTGAGCAACAGATAGCCACACTTTGTTTTTCCCCGTTCGTTGACTCC
AGCTGAACAATAATACAACAACAAAAACAATGGCTTGCTCAGCTGCTTCT
GCTGCTGCCACGGCAACAGCCGCTCTCATTTCCTCTAACCCCAAGGCTTT
CTCTTCTTCCTCAATCTCCCCTTCTCAAAACCTAACCATTCCCCGCTCCT
TCTCCGGCCTCCGCAATCCCCTCCAGTCCCAGGTCCCCCGCCCCGTTTCT
CTTTCCCGCGGGTCCCGTTCTCGCAAGTCCTTCGTTGTCAAAGCATCCGT
TGAAATACCACCATTGGTGGGCAACACGGCACCTGATTTTGCTGCAGAGG
CTGTTTTCGATCAAGAGTTCATCAATGTCAAGCTTTCGGATTACATTGGG
AAGAAATATGTGATTCTCTTTTTCTACCCGTTGGACTTCACATTTGTTTG
CCCCACAGAAATCACTGCTTTCAGCGACCGATATACTGAATTTGAGAAGC
TAAACACAGAGATATTGGGTGTCTCAACCGACAGTGTGTTTTCACACTTG
GCATGGGTCCAAACAGACAGAAAGTCAGGTGGTCTTGGTGATTTGAAGTA
CCCACTAATTGCTGATA
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