CX287482

Overview
NameCX287482
Unique NameCX287482
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig378 contig Ccv1_Contig378:43..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: TSA2_YEAST (Peroxiredoxin TSA2 OS=Saccharomyces cerevisiae GN=TSA2 PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 1.012e-19
Identity = 52/100 (52.00%), Postives = 61/100 (61.00%), Query Frame = 2
Query:  317 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            V   AP F   AV D  F  + L  Y GK YV+L F PL F+FVCPTEI AFSD   +FE    ++L  STDS +S LAW    RK GGLG +K PL+AD
Sbjct:    5 VQKQAPPFKKTAVVDGIFEEISLEKYKGK-YVVLAFVPLAFSFVCPTEIVAFSDAAKKFEDQGAQVLFASTDSEYSLLAWTNLPRKDGGLGPVKVPLLAD 103          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: TSA1_YEAST (Peroxiredoxin TSA1 OS=Saccharomyces cerevisiae GN=TSA1 PE=1 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 1.321e-19
Identity = 52/100 (52.00%), Postives = 61/100 (61.00%), Query Frame = 2
Query:  317 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            V   AP F   AV D  F  V L  Y GK YV+L F PL FTFVCPTEI AFS+   +FE+   ++L  STDS +S LAW    RK GGLG +  PL+AD
Sbjct:    5 VQKQAPTFKKTAVVDGVFDEVSLDKYKGK-YVVLAFIPLAFTFVCPTEIIAFSEAAKKFEEQGAQVLFASTDSEYSLLAWTNIPRKEGGLGPINIPLLAD 103          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: TSAA_HELPJ (Probable peroxiredoxin OS=Helicobacter pylori J99 GN=tsaA PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.845e-19
Identity = 48/103 (46.60%), Postives = 63/103 (61.17%), Query Frame = 2
Query:  314 LVGNTAPDFAAEAVFDQEFIN--VKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            LV   APDF A AV     ++   +LS  +GK  VILFF+P DFTFVCPTEI AF  R  +F +    ++GVS DS   H AW  T  + GG+G + +P++AD
Sbjct:    2 LVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVAD 104          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: TSAA_BUCAI (Probable peroxiredoxin OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=BU182 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.021e-19
Identity = 45/103 (43.69%), Postives = 66/103 (64.08%), Query Frame = 2
Query:  314 LVGNTAPDFAAEAVFDQEFI--NVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            LV   AP+F A A+     I     L  Y   +  +LFF+P+DFTFVCP+EI  F+  ++EF+K N +I+GVS DSV+ H AW  T  K+GG+G + +P+++D
Sbjct:    3 LVTQNAPNFIAPAILKNNQIVEQFDLKKYSNGQSTVLFFWPMDFTFVCPSEIIEFNKLHSEFKKRNVKIVGVSIDSVYVHQAWQNTLPKNGGIGKINFPMVSD 105          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: TSAA_HELPY (Probable peroxiredoxin OS=Helicobacter pylori GN=tsaA PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 8.565e-19
Identity = 47/103 (45.63%), Postives = 63/103 (61.17%), Query Frame = 2
Query:  314 LVGNTAPDFAAEAVFDQEFIN--VKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            LV   APDF A AV     ++   +LS  +GK   ILFF+P DFTFVCPTEI AF  R  +F++    ++GVS DS   H AW  T  + GG+G + +P++AD
Sbjct:    2 LVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGAILFFWPKDFTFVCPTEIIAFDKRVKDFQEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVTFPMVAD 104          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: PRXU_EUBAC (Selenocysteine-containing peroxiredoxin prxU OS=Eubacterium acidaminophilum GN=prxU PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 3.255e-18
Identity = 44/100 (44.00%), Postives = 63/100 (63.00%), Query Frame = 2
Query:  317 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            VG  APDF     +  EF   +LS+Y+GK +V+L FYP DFTFV  TE++A +++Y EF+KL  E+L VS DSVF H  W   +      G + +P+++D
Sbjct:    4 VGKKAPDFEMAGFYKGEFKTFRLSEYLGK-WVVLCFYPGDFTFVUATEVSAVAEKYPEFQKLGVEVLSVSVDSVFVHKMWNDNELSKMVEGGIPFPMLSD 102          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: TSA1_CANAL (Peroxiredoxin TSA1 OS=Candida albicans GN=TSA1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.251e-18
Identity = 46/102 (45.10%), Postives = 64/102 (62.75%), Query Frame = 2
Query:  311 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            P+V   AP F   AV D  F  V L  Y GK +V+L F PL FTFVCP+EI A+S+   +F + + ++L  STDS ++ LAW    RK GG+G + +P++AD
Sbjct:    3 PVVQQPAPSFKKTAVVDGVFEEVTLEQYKGK-WVLLAFIPLAFTFVCPSEIIAYSEAVKKFAEKDAQVLFASTDSEYTWLAWTNVARKDGGIGKVDFPVLAD 103          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: TDXH_THEVO (Probable peroxiredoxin OS=Thermoplasma volcanium GN=TV1123 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.470e-18
Identity = 46/104 (44.23%), Postives = 70/104 (67.31%), Query Frame = 2
Query:  305 IPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            +P ++G  APDF            + LS+Y GK +V+LF +P DFT VC TE  AF++RY +F+KL  E++G+S DSVFSH+AW++  ++  G+ D+ +P+IAD
Sbjct:    1 MPVVLGQKAPDFTVNTSKGP----ITLSNYRGK-WVLLFSHPGDFTPVCTTEFIAFTERYEDFQKLGVELIGLSIDSVFSHIAWIRDIKEHFGI-DIPFPIIAD 98          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: TDX_ENCCU (Putative thioredoxin peroxidase OS=Encephalitozoon cuniculi GN=ECU03_1190 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.599e-17
Identity = 45/97 (46.39%), Postives = 58/97 (59.79%), Query Frame = 2
Query:  326 TAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            T  D   +A  D E   + L DYIGK YV+L FYPLDFTFVCPTEI  FSD    F + N  +L +S DSV++H AW    R+  G+    +P++ D
Sbjct:    5 TLTDSKYKAFVDGEIKEISLQDYIGK-YVVLAFYPLDFTFVCPTEINRFSDLKGAFLRRNAVVLLISCDSVYTHKAWASIPREQNGVLGTAWPMVWD 100          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: TDXH_STAMF (Probable peroxiredoxin OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=Smar_0058 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.138e-17
Identity = 42/102 (41.18%), Postives = 65/102 (63.73%), Query Frame = 2
Query:  311 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            PL+G   P+        +    +KL DY   KY +LF +P DFT VC TE  AF+ RY +F+KLNTE++G+S DS FSH+ W++  ++  G+ ++ +P++AD
Sbjct:    6 PLIGEKFPEMEVVTQHGK----IKLPDYFKGKYWVLFSHPADFTPVCTTEFVAFAKRYEDFKKLNTELIGLSVDSNFSHIKWIEWIKEKLGV-EIPFPIMAD 102          
The following BLAST results are available for this feature:
BLAST of CX287482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
TSA2_YEAST1.012e-1952.00Peroxiredoxin TSA2 OS=Saccharomyces cerevisiae GN=... [more]
TSA1_YEAST1.321e-1952.00Peroxiredoxin TSA1 OS=Saccharomyces cerevisiae GN=... [more]
TSAA_HELPJ3.845e-1946.60Probable peroxiredoxin OS=Helicobacter pylori J99 ... [more]
TSAA_BUCAI5.021e-1943.69Probable peroxiredoxin OS=Buchnera aphidicola subs... [more]
TSAA_HELPY8.565e-1945.63Probable peroxiredoxin OS=Helicobacter pylori GN=t... [more]
PRXU_EUBAC3.255e-1844.00Selenocysteine-containing peroxiredoxin prxU OS=Eu... [more]
TSA1_CANAL4.251e-1845.10Peroxiredoxin TSA1 OS=Candida albicans GN=TSA1 PE=... [more]
TDXH_THEVO9.470e-1844.23Probable peroxiredoxin OS=Thermoplasma volcanium G... [more]
TDX_ENCCU3.599e-1746.39Putative thioredoxin peroxidase OS=Encephalitozoon... [more]
TDXH_STAMF6.138e-1741.18Probable peroxiredoxin OS=Staphylothermus marinus ... [more]

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Properties
Property NameValue
Genbank descriptionC01010A08SK Veg1 Citrus clementina cDNA clone C01010A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287482 ID=CX287482; Name=CX287482; organism=Citrus clementina; type=EST; length=617bp
ATTTTGAGCAACAGATAGCCACACTTTGTTTTTCCCCGTTCGTTGACTCC
AGCTGAACAATAATACAACAACAAAAACAATGGCTTGCTCAGCTGCTTCT
GCTGCTGCCACGGCAACAGCCGCTCTCATTTCCTCTAACCCCAAGGCTTT
CTCTTCTTCCTCAATCTCCCCTTCTCAAAACCTAACCATTCCCCGCTCCT
TCTCCGGCCTCCGCAATCCCCTCCAGTCCCAGGTCCCCCGCCCCGTTTCT
CTTTCCCGCGGGTCCCGTTCTCGCAAGTCCTTCGTTGTCAAAGCATCCGT
TGAAATACCACCATTGGTGGGCAACACGGCACCTGATTTTGCTGCAGAGG
CTGTTTTCGATCAAGAGTTCATCAATGTCAAGCTTTCGGATTACATTGGG
AAGAAATATGTGATTCTCTTTTTCTACCCGTTGGACTTCACATTTGTTTG
CCCCACAGAAATCACTGCTTTCAGCGACCGATATACTGAATTTGAGAAGC
TAAACACAGAGATATTGGGTGTCTCAACCGACAGTGTGTTTTCACACTTG
GCATGGGTCCAAACAGACAGAAAGTCAGGTGGTCTTGGTGATTTGAAGTA
CCCACTAATTGCTGATA
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