CX287482

Overview
NameCX287482
Unique NameCX287482
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig378 contig Ccv1_Contig378:43..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: TDXH2_THETN (Probable peroxiredoxin 2 OS=Thermoanaerobacter tengcongensis GN=TTE2186 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.367e-16
Identity = 47/102 (46.08%), Postives = 66/102 (64.71%), Query Frame = 2
Query:  311 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            P +G  APDF A + F      +KLSDY GK +V+LF +P DFT VC TE  AF+  YT F + N +++G+S DS  SHLAWV+   K+ G+ ++ +P+I D
Sbjct:   15 PQIGAPAPDFKANSTFGP----IKLSDYRGK-WVVLFSHPGDFTPVCTTEFIAFTQVYTSFVERNVQLIGLSVDSNPSHLAWVENIYKTTGV-EIPFPIIED 110          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: TDXH_AQUAE (Probable peroxiredoxin OS=Aquifex aeolicus GN=aq_858 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.333e-16
Identity = 43/102 (42.16%), Postives = 63/102 (61.76%), Query Frame = 2
Query:  311 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            P +G  AP F A+  F      VK  D    ++V+LF +P DFT VC TE  AF+  Y EF+K N +++G+S DS FSH+AWV   ++  G+ ++ +P+IAD
Sbjct:    7 PRLGEPAPAFEAQTTFGP----VKFPDDFKGQWVVLFSHPADFTPVCTTEFVAFAKNYEEFKKRNVQLIGLSVDSNFSHIAWVMNIKEKFGI-EIPFPIIAD 103          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: TDXH_HYPBU (Probable peroxiredoxin OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=Hbut_0228 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.787e-16
Identity = 40/102 (39.22%), Postives = 63/102 (61.76%), Query Frame = 2
Query:  311 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            P +G   P+        +    +KL D+   K+ +LF +P DFT VC TE  AF+ RY +F+KLNTE++G+S DS FSH+ W +  ++  G+ ++ +P+IAD
Sbjct:    6 PSIGEKFPEIEVMTTHGK----IKLPDHFRGKWFVLFSHPADFTPVCTTEFVAFAKRYEDFKKLNTELIGLSVDSTFSHIKWAEWIKEKLGV-EIPFPIIAD 102          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: TSAA_BUCBP (Probable peroxiredoxin OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=bbp_171 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.864e-16
Identity = 41/103 (39.81%), Postives = 63/103 (61.17%), Query Frame = 2
Query:  314 LVGNTAPDFAAEAVFDQEFI--NVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            LV   APDF A A+     I  N    ++   +  ILFF+P+DFTFVCP+EI AF+   ++F+K N +++GVS DSV+ H AW  T   +G +  + + +++D
Sbjct:    3 LVTYPAPDFTASAISCNGDIINNFNFKEFTNNQTSILFFWPMDFTFVCPSEIIAFNQELSKFKKRNVKLIGVSIDSVYVHHAWRNTLSHNGQIDKINFTMVSD 105          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: TDXH_THEP1 (Probable peroxiredoxin OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=Tpet_0121 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.158e-15
Identity = 41/102 (40.20%), Postives = 63/102 (61.76%), Query Frame = 2
Query:  311 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            PL+G   P    +    ++     L D    K+ +LF +P DFT VC TE  AF  RY EF+KLNTE++G+S D VFSH+ W++  ++  G+ ++++P+IAD
Sbjct:    6 PLIGEEFPRLEVKTTHGKKI----LPDDFRGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFKKLNTELIGLSIDQVFSHIKWIEWIKEKLGV-EIEFPVIAD 102          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: TDXH2_THEAC (Probable peroxiredoxin 2 OS=Thermoplasma acidophilum GN=Ta0954 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.158e-15
Identity = 44/100 (44.00%), Postives = 65/100 (65.00%), Query Frame = 2
Query:  317 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            +G  APDF            V LS Y GK +V+LF +P DFT VC TE  AF++RY +F+ L  E+LG+S DSV+SH+AW++  ++  G+ ++ +P+IAD
Sbjct:    1 MGQKAPDFTVNTSKGP----VTLSSYRGK-WVLLFSHPGDFTPVCTTEFIAFTERYKDFQALGVELLGLSIDSVYSHIAWIRDIKEHFGI-EIPFPIIAD 94          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: TDXH_THEMA (Probable peroxiredoxin OS=Thermotoga maritima GN=TM_0807 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.579e-15
Identity = 41/102 (40.20%), Postives = 62/102 (60.78%), Query Frame = 2
Query:  311 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            PL+G   P    +    ++     L D    K+ +LF +P DFT VC TE  AF  RY EF KLNTE++G+S D VFSH+ W++  ++  G+ ++++P+IAD
Sbjct:    6 PLIGEEFPRVEVKTTHGKKV----LPDDFRGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRKLNTELIGLSIDQVFSHIKWIEWIKEKLGV-EIEFPVIAD 102          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: TDXH_METJA (Probable peroxiredoxin OS=Methanocaldococcus jannaschii GN=MJ0736 PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.368e-15
Identity = 42/104 (40.38%), Postives = 63/104 (60.58%), Query Frame = 2
Query:  311 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKK--YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            P++G   P+   +         +KL DY  +K  + +LF +P DFT VC TE   F  RY EF KLNTE++G+S D VFSHL WV+  ++   + ++++P+IAD
Sbjct:    2 PVIGEKFPEVEVKTTHGA----IKLPDYYVEKGKWFVLFSHPADFTPVCTTEFVGFQKRYDEFRKLNTELIGLSIDQVFSHLKWVEWIKEKLNV-EIEFPIIAD 100          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: TDXH2_PICTO (Probable peroxiredoxin 2 OS=Picrophilus torridus GN=PTO0727 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.368e-15
Identity = 42/104 (40.38%), Postives = 66/104 (63.46%), Query Frame = 2
Query:  305 IPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            +P  +G  APDF A          + LSDY   K+V+LF +P DFT +C TE   FS RY +F++LN E++G+S DS+ SH+ W++   +  G+ ++++P+IAD
Sbjct:    1 MPVYLGKRAPDFTANTTRGV----ISLSDY-KNKWVLLFSHPADFTPICTTEFIEFSRRYNDFKELNVELIGLSVDSLQSHIEWLKDIYEKFGI-EIQFPVIAD 98          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: TDXH_ARCFU (Probable peroxiredoxin OS=Archaeoglobus fulgidus GN=AF_0270 PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 9.800e-15
Identity = 39/102 (38.24%), Postives = 63/102 (61.76%), Query Frame = 2
Query:  311 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            PL+G+  P+        +    +KL +    K+ +LF +P DFT VC TE  AF +RY EF KLN E++G+S D VFSH+ W++  ++   + ++++P+IAD
Sbjct:    3 PLLGDNFPEIEVVTTHGR----MKLPEAFKGKWFVLFSHPADFTPVCTTEFVAFQNRYDEFRKLNCELIGLSIDQVFSHIKWIEWIKEKLDI-EIEFPVIAD 99          
The following BLAST results are available for this feature:
BLAST of CX287482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
TDXH2_THETN1.367e-1646.08Probable peroxiredoxin 2 OS=Thermoanaerobacter ten... [more]
TDXH_AQUAE2.333e-1642.16Probable peroxiredoxin OS=Aquifex aeolicus GN=aq_8... [more]
TDXH_HYPBU6.787e-1639.22Probable peroxiredoxin OS=Hyperthermus butylicus (... [more]
TSAA_BUCBP8.864e-1639.81Probable peroxiredoxin OS=Buchnera aphidicola subs... [more]
TDXH_THEP11.158e-1540.20Probable peroxiredoxin OS=Thermotoga petrophila (s... [more]
TDXH2_THEAC1.158e-1544.00Probable peroxiredoxin 2 OS=Thermoplasma acidophil... [more]
TDXH_THEMA2.579e-1540.20Probable peroxiredoxin OS=Thermotoga maritima GN=T... [more]
TDXH_METJA3.368e-1540.38Probable peroxiredoxin OS=Methanocaldococcus janna... [more]
TDXH2_PICTO3.368e-1540.38Probable peroxiredoxin 2 OS=Picrophilus torridus G... [more]
TDXH_ARCFU9.800e-1538.24Probable peroxiredoxin OS=Archaeoglobus fulgidus G... [more]

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Properties
Property NameValue
Genbank descriptionC01010A08SK Veg1 Citrus clementina cDNA clone C01010A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287482 ID=CX287482; Name=CX287482; organism=Citrus clementina; type=EST; length=617bp
ATTTTGAGCAACAGATAGCCACACTTTGTTTTTCCCCGTTCGTTGACTCC
AGCTGAACAATAATACAACAACAAAAACAATGGCTTGCTCAGCTGCTTCT
GCTGCTGCCACGGCAACAGCCGCTCTCATTTCCTCTAACCCCAAGGCTTT
CTCTTCTTCCTCAATCTCCCCTTCTCAAAACCTAACCATTCCCCGCTCCT
TCTCCGGCCTCCGCAATCCCCTCCAGTCCCAGGTCCCCCGCCCCGTTTCT
CTTTCCCGCGGGTCCCGTTCTCGCAAGTCCTTCGTTGTCAAAGCATCCGT
TGAAATACCACCATTGGTGGGCAACACGGCACCTGATTTTGCTGCAGAGG
CTGTTTTCGATCAAGAGTTCATCAATGTCAAGCTTTCGGATTACATTGGG
AAGAAATATGTGATTCTCTTTTTCTACCCGTTGGACTTCACATTTGTTTG
CCCCACAGAAATCACTGCTTTCAGCGACCGATATACTGAATTTGAGAAGC
TAAACACAGAGATATTGGGTGTCTCAACCGACAGTGTGTTTTCACACTTG
GCATGGGTCCAAACAGACAGAAAGTCAGGTGGTCTTGGTGATTTGAAGTA
CCCACTAATTGCTGATA
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