CX287482

Overview
NameCX287482
Unique NameCX287482
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig378 contig Ccv1_Contig378:43..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: TDXH2_SULTO (Probable peroxiredoxin 2 OS=Sulfolobus tokodaii GN=ST2442 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.800e-15
Identity = 43/107 (40.19%), Postives = 64/107 (59.81%), Query Frame = 2
Query:  296 SVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            S E  PL+G   P+        +    +KL DY   K+ +LF +P DFT VC TE  +F+ +Y EF+KLNTE++G+S DS  SH+ WV    K+  + ++ +P+IAD
Sbjct:    2 SEEKIPLIGEKFPEMEVITTHGK----IKLPDYYQGKWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKV-EIPFPIIAD 103          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: TDXH_METMA (Probable peroxiredoxin OS=Methanosarcina mazei GN=MM_0814 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.672e-14
Identity = 47/107 (43.93%), Postives = 64/107 (59.81%), Query Frame = 2
Query:  311 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWV-----QTDRKSGGLGDLKYPLIAD 616
            PL+G+ AP F A  V  Q  I     DY GK +VILF +P DFT VC TE   F+    EF  +NTE++G+S DSVFSH+AW+     + + K     ++K+P+I D
Sbjct:    2 PLIGDDAPSFTA--VTTQGIIKFP-DDYKGK-WVILFSHPADFTPVCTTEFMTFASMQEEFRSMNTELIGLSIDSVFSHIAWLKRIEEKIEYKGMKNLEIKFPVIED 104          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: TDXH_IGNH4 (Probable peroxiredoxin OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=Igni_0459 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.183e-14
Identity = 41/102 (40.20%), Postives = 63/102 (61.76%), Query Frame = 2
Query:  311 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            PL+G   P    E V   +    KL D    K++++F +P DFT VC TE  AF+ RY +F+KLNTE+LG+S D+ FSH+ W +  ++   + ++ +P+IAD
Sbjct:    6 PLIGEKLP----EMVVHTDHGPKKLPDDYKGKWLVIFSHPADFTPVCTTEFVAFAKRYEDFKKLNTELLGLSVDNSFSHIKWKEWIKEKLNV-EIPFPIIAD 102          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: TDXH1_PICTO (Probable peroxiredoxin 1 OS=Picrophilus torridus GN=PTO0377 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.352e-14
Identity = 39/102 (38.24%), Postives = 62/102 (60.78%), Query Frame = 2
Query:  311 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            PL+G   P+            N+KL D    K+ +LF +P DFT VC TE  +F+  + +F+KLNTE++G+S DS  SH+ W+   +++  + D+K+P+IAD
Sbjct:    6 PLIGEKFPEMEVVTNLG----NIKLPDDFKGKWFVLFSHPGDFTPVCTTEFFSFAKHHDDFKKLNTELIGLSVDSKISHIEWINWIKQNLKI-DIKFPIIAD 102          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: TDXH_METVS (Probable peroxiredoxin OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=Mevan_0492 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.084e-13
Identity = 41/100 (41.00%), Postives = 62/100 (62.00%), Query Frame = 2
Query:  350 AVFDQEFINVKLSDYIGK-----------KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            AV  ++F +V+L    GK           K+ +LF +P DFT VC TE  AF  RY +F +LNTE++G+S D VFSH+ WV+  ++   + D+++P+IAD
Sbjct:    2 AVIGEKFPDVELLTTHGKLKLPEHFIEAGKWFVLFSHPGDFTPVCTTEFVAFQKRYDQFRELNTELIGLSIDQVFSHIKWVEWIKEKLDV-DIEFPIIAD 100          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: AHPC_SALTY (Alkyl hydroperoxide reductase subunit C OS=Salmonella typhimurium GN=ahpC PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.848e-13
Identity = 40/101 (39.60%), Postives = 56/101 (55.45%), Query Frame = 2
Query:  314 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            L+      F  +A  + EFI V   D  G+ + + FFYP DFTFVCPTE+   +D Y E +KL  ++  VSTD+ F+H AW      S  +  +KY +I D
Sbjct:    3 LINTKIKPFKNQAFKNGEFIEVTEKDTEGR-WSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAW---HSSSETIAKIKYAMIGD 99          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: AHPC_SALTI (Alkyl hydroperoxide reductase subunit C OS=Salmonella typhi GN=ahpC PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.848e-13
Identity = 40/101 (39.60%), Postives = 56/101 (55.45%), Query Frame = 2
Query:  314 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            L+      F  +A  + EFI V   D  G+ + + FFYP DFTFVCPTE+   +D Y E +KL  ++  VSTD+ F+H AW      S  +  +KY +I D
Sbjct:    3 LINTKIKPFKNQAFKNGEFIEVTEKDTEGR-WSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAW---HSSSETIAKIKYAMIGD 99          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: TDXH_SULSO (Probable peroxiredoxin OS=Sulfolobus solfataricus GN=SSO2121 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.414e-13
Identity = 42/107 (39.25%), Postives = 65/107 (60.75%), Query Frame = 2
Query:  296 SVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            S E  PL+G   P+   E +  Q    +KL D    ++ +LF +P DFT VC TE  +F+ +Y EF+KLNTE++G+S DS  SH+ W+    K+  + ++ +P+IAD
Sbjct:    2 SEERIPLIGERFPEM--EVITTQG--RIKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWIMWIEKNLKV-EIPFPIIAD 103          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: AHPC_SHIFL (Alkyl hydroperoxide reductase subunit C OS=Shigella flexneri GN=ahpC PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.414e-13
Identity = 39/101 (38.61%), Postives = 56/101 (55.45%), Query Frame = 2
Query:  314 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            L+      F  +A  + EFI +   D  G+ + + FFYP DFTFVCPTE+   +D Y E +KL  ++  VSTD+ F+H AW      S  +  +KY +I D
Sbjct:    3 LINTKIKPFKNQAFKNGEFIEITEKDTEGR-WSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYAVSTDTHFTHKAW---HSSSETIAKIKYAMIGD 99          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: AHPC_ECOLI (Alkyl hydroperoxide reductase subunit C OS=Escherichia coli (strain K12) GN=ahpC PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.414e-13
Identity = 39/101 (38.61%), Postives = 56/101 (55.45%), Query Frame = 2
Query:  314 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            L+      F  +A  + EFI +   D  G+ + + FFYP DFTFVCPTE+   +D Y E +KL  ++  VSTD+ F+H AW      S  +  +KY +I D
Sbjct:    3 LINTKIKPFKNQAFKNGEFIEITEKDTEGR-WSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYAVSTDTHFTHKAW---HSSSETIAKIKYAMIGD 99          
The following BLAST results are available for this feature:
BLAST of CX287482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
TDXH2_SULTO9.800e-1540.19Probable peroxiredoxin 2 OS=Sulfolobus tokodaii GN... [more]
TDXH_METMA1.672e-1443.93Probable peroxiredoxin OS=Methanosarcina mazei GN=... [more]
TDXH_IGNH42.183e-1440.20Probable peroxiredoxin OS=Ignicoccus hospitalis (s... [more]
TDXH1_PICTO6.352e-1438.24Probable peroxiredoxin 1 OS=Picrophilus torridus G... [more]
TDXH_METVS1.084e-1341.00Probable peroxiredoxin OS=Methanococcus vannielii ... [more]
AHPC_SALTY1.848e-1339.60Alkyl hydroperoxide reductase subunit C OS=Salmone... [more]
AHPC_SALTI1.848e-1339.60Alkyl hydroperoxide reductase subunit C OS=Salmone... [more]
TDXH_SULSO2.414e-1339.25Probable peroxiredoxin OS=Sulfolobus solfataricus ... [more]
AHPC_SHIFL2.414e-1338.61Alkyl hydroperoxide reductase subunit C OS=Shigell... [more]
AHPC_ECOLI2.414e-1338.61Alkyl hydroperoxide reductase subunit C OS=Escheri... [more]

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Properties
Property NameValue
Genbank descriptionC01010A08SK Veg1 Citrus clementina cDNA clone C01010A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287482 ID=CX287482; Name=CX287482; organism=Citrus clementina; type=EST; length=617bp
ATTTTGAGCAACAGATAGCCACACTTTGTTTTTCCCCGTTCGTTGACTCC
AGCTGAACAATAATACAACAACAAAAACAATGGCTTGCTCAGCTGCTTCT
GCTGCTGCCACGGCAACAGCCGCTCTCATTTCCTCTAACCCCAAGGCTTT
CTCTTCTTCCTCAATCTCCCCTTCTCAAAACCTAACCATTCCCCGCTCCT
TCTCCGGCCTCCGCAATCCCCTCCAGTCCCAGGTCCCCCGCCCCGTTTCT
CTTTCCCGCGGGTCCCGTTCTCGCAAGTCCTTCGTTGTCAAAGCATCCGT
TGAAATACCACCATTGGTGGGCAACACGGCACCTGATTTTGCTGCAGAGG
CTGTTTTCGATCAAGAGTTCATCAATGTCAAGCTTTCGGATTACATTGGG
AAGAAATATGTGATTCTCTTTTTCTACCCGTTGGACTTCACATTTGTTTG
CCCCACAGAAATCACTGCTTTCAGCGACCGATATACTGAATTTGAGAAGC
TAAACACAGAGATATTGGGTGTCTCAACCGACAGTGTGTTTTCACACTTG
GCATGGGTCCAAACAGACAGAAAGTCAGGTGGTCTTGGTGATTTGAAGTA
CCCACTAATTGCTGATA
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