CX287482

Overview
NameCX287482
Unique NameCX287482
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig378 contig Ccv1_Contig378:43..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: AHPC_ECOL6 (Alkyl hydroperoxide reductase subunit C OS=Escherichia coli O6 GN=ahpC PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.414e-13
Identity = 39/101 (38.61%), Postives = 56/101 (55.45%), Query Frame = 2
Query:  314 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            L+      F  +A  + EFI +   D  G+ + + FFYP DFTFVCPTE+   +D Y E +KL  ++  VSTD+ F+H AW      S  +  +KY +I D
Sbjct:    3 LINTKIKPFKNQAFKNGEFIEITEKDTEGR-WSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYAVSTDTHFTHKAW---HSSSETIAKIKYAMIGD 99          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: AHPC_ECO57 (Alkyl hydroperoxide reductase subunit C OS=Escherichia coli O157:H7 GN=ahpC PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.414e-13
Identity = 39/101 (38.61%), Postives = 56/101 (55.45%), Query Frame = 2
Query:  314 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            L+      F  +A  + EFI +   D  G+ + + FFYP DFTFVCPTE+   +D Y E +KL  ++  VSTD+ F+H AW      S  +  +KY +I D
Sbjct:    3 LINTKIKPFKNQAFKNGEFIEITEKDTEGR-WSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYAVSTDTHFTHKAW---HSSSETIAKIKYAMIGD 99          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: TDXH_METMP (Probable peroxiredoxin OS=Methanococcus maripaludis GN=MMP1174 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.152e-13
Identity = 34/71 (47.89%), Postives = 51/71 (71.83%), Query Frame = 2
Query:  404 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            K+ +LF +P DFT VC TE  AF  RY +F +LNTE++G+S D VFSH+ WV+  ++   + D+++P+IAD
Sbjct:   31 KWFVLFSHPGDFTPVCTTEFVAFQKRYDQFRELNTELIGLSIDQVFSHIKWVEWIKEKLDV-DIEFPIIAD 100          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: TDXH_METM5 (Probable peroxiredoxin OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=MmarC5_0413 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.117e-13
Identity = 34/71 (47.89%), Postives = 50/71 (70.42%), Query Frame = 2
Query:  404 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            K+ +LF +P DFT VC TE  AF  RY +F  LNTE++G+S D VFSH+ WV+  ++   + D+++P+IAD
Sbjct:   31 KWFVLFSHPGDFTPVCTTEFVAFQKRYDQFRSLNTELIGLSIDQVFSHIKWVEWIKEKLDV-DIEFPIIAD 100          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: TDXH1_THETN (Probable peroxiredoxin 1 OS=Thermoanaerobacter tengcongensis GN=TTE0270 PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 9.172e-13
Identity = 36/76 (47.37%), Postives = 53/76 (69.74%), Query Frame = 2
Query:  389 DYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            DY GK +V LF +P DFT VC TE   F+ +  EF++LNTE++G+S D VFSH+ WV+  + + G+  + +P+IAD
Sbjct:   25 DYAGKWFV-LFSHPADFTPVCTTEFVEFARKAEEFKQLNTELIGLSVDQVFSHIKWVEWIKDNTGV-QIPFPVIAD 98          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: TDXH1_THEAC (Probable peroxiredoxin 1 OS=Thermoplasma acidophilum GN=Ta0473 PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.198e-12
Identity = 36/102 (35.29%), Postives = 61/102 (59.80%), Query Frame = 2
Query:  311 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            PL+G   P+   E        ++KL D    ++ +LF +P DFT VC TE  +F+ R+ +F+K+NT+++G+S DS  SH+ WV   R +  + ++ +P+I D
Sbjct:    8 PLIGEKFPEMTVETTHG----SMKLPDQYKGRWFMLFSHPGDFTPVCTTEFYSFARRFEDFQKINTDLIGLSVDSTISHIEWVNWIRDNLKI-EVPFPIIGD 104          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: TDXH1_SULTO (Probable peroxiredoxin 1 OS=Sulfolobus tokodaii GN=ST0584 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.198e-12
Identity = 35/77 (45.45%), Postives = 52/77 (67.53%), Query Frame = 2
Query:  389 DYIGK-KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            D  GK K++ LF +P DFT VC TE  AFS +Y EF+KL  E++G+S DS++SH+ W+    +  G+  + +P+IAD
Sbjct:   25 DIFGKGKWLFLFAHPADFTPVCTTEFVAFSQKYEEFKKLGVELVGLSVDSIYSHIQWLMDIEQRYGV-KVPFPVIAD 100          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: TDXH_AERPE (Probable peroxiredoxin OS=Aeropyrum pernix GN=APE_2278 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.565e-12
Identity = 41/104 (39.42%), Postives = 64/104 (61.54%), Query Frame = 2
Query:  311 PLVGNTAPDFAAEAVFDQEFINVKLSD-YIGK-KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            PL+G   P+   E   D   I  KL D Y+ + K+ +LF +P DFT VC TE  +F+ RY +F++L  +++G+S DSVFSH+ W +   +  G+  + +P+IAD
Sbjct:    6 PLIGERFPEM--EVTTDHGVI--KLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGV-RIPFPIIAD 104          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: REHY_WHEAT (1-Cys peroxiredoxin PER1 OS=Triticum aestivum GN=PER1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.565e-12
Identity = 36/100 (36.00%), Postives = 57/100 (57.00%), Query Frame = 2
Query:  317 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            +G+T P+   ++   +    +++ DY+G  YVILF +P DFT VC TE+ A ++   EFEK   ++LG+S D V SH  W +          + YP++AD
Sbjct:    6 IGDTVPNLELDSTHGK----IRIHDYVGNGYVILFSHPGDFTPVCTTELAAMANYAKEFEKRGVKLLGISCDDVQSHKEWTKDIEAYKPGSKVTYPIMAD 101          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: REHY_HORVU (1-Cys peroxiredoxin PER1 OS=Hordeum vulgare GN=PER1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.565e-12
Identity = 36/100 (36.00%), Postives = 57/100 (57.00%), Query Frame = 2
Query:  317 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            +G+T P+   ++   +    +++ DY+G  YVILF +P DFT VC TE+ A ++   EFEK   ++LG+S D V SH  W +          + YP++AD
Sbjct:    6 IGDTVPNLELDSTHGK----IRIHDYVGNGYVILFSHPGDFTPVCTTELAAMANYAKEFEKRGVKLLGISCDDVQSHKEWTKDIEAYKPGSKVTYPIMAD 101          
The following BLAST results are available for this feature:
BLAST of CX287482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
AHPC_ECOL62.414e-1338.61Alkyl hydroperoxide reductase subunit C OS=Escheri... [more]
AHPC_ECO572.414e-1338.61Alkyl hydroperoxide reductase subunit C OS=Escheri... [more]
TDXH_METMP3.152e-1347.89Probable peroxiredoxin OS=Methanococcus maripaludi... [more]
TDXH_METM54.117e-1347.89Probable peroxiredoxin OS=Methanococcus maripaludi... [more]
TDXH1_THETN9.172e-1347.37Probable peroxiredoxin 1 OS=Thermoanaerobacter ten... [more]
TDXH1_THEAC1.198e-1235.29Probable peroxiredoxin 1 OS=Thermoplasma acidophil... [more]
TDXH1_SULTO1.198e-1245.45Probable peroxiredoxin 1 OS=Sulfolobus tokodaii GN... [more]
TDXH_AERPE1.565e-1239.42Probable peroxiredoxin OS=Aeropyrum pernix GN=APE_... [more]
REHY_WHEAT1.565e-1236.001-Cys peroxiredoxin PER1 OS=Triticum aestivum GN=P... [more]
REHY_HORVU1.565e-1236.001-Cys peroxiredoxin PER1 OS=Hordeum vulgare GN=PER... [more]

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Properties
Property NameValue
Genbank descriptionC01010A08SK Veg1 Citrus clementina cDNA clone C01010A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287482 ID=CX287482; Name=CX287482; organism=Citrus clementina; type=EST; length=617bp
ATTTTGAGCAACAGATAGCCACACTTTGTTTTTCCCCGTTCGTTGACTCC
AGCTGAACAATAATACAACAACAAAAACAATGGCTTGCTCAGCTGCTTCT
GCTGCTGCCACGGCAACAGCCGCTCTCATTTCCTCTAACCCCAAGGCTTT
CTCTTCTTCCTCAATCTCCCCTTCTCAAAACCTAACCATTCCCCGCTCCT
TCTCCGGCCTCCGCAATCCCCTCCAGTCCCAGGTCCCCCGCCCCGTTTCT
CTTTCCCGCGGGTCCCGTTCTCGCAAGTCCTTCGTTGTCAAAGCATCCGT
TGAAATACCACCATTGGTGGGCAACACGGCACCTGATTTTGCTGCAGAGG
CTGTTTTCGATCAAGAGTTCATCAATGTCAAGCTTTCGGATTACATTGGG
AAGAAATATGTGATTCTCTTTTTCTACCCGTTGGACTTCACATTTGTTTG
CCCCACAGAAATCACTGCTTTCAGCGACCGATATACTGAATTTGAGAAGC
TAAACACAGAGATATTGGGTGTCTCAACCGACAGTGTGTTTTCACACTTG
GCATGGGTCCAAACAGACAGAAAGTCAGGTGGTCTTGGTGATTTGAAGTA
CCCACTAATTGCTGATA
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