CX287482

Overview
NameCX287482
Unique NameCX287482
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig378 contig Ccv1_Contig378:43..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: PRX1_YEAST (Mitochondrial peroxiredoxin PRX1 OS=Saccharomyces cerevisiae GN=PRX1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.043e-12
Identity = 33/100 (33.00%), Postives = 60/100 (60.00%), Query Frame = 2
Query:  317 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            + + AP+F A+    +    +   DY+G  + +LF +P DFT VC TE++AF+    EF+K N +++G+S + V SH  W+Q  ++   + ++ +P+I D
Sbjct:   51 INSDAPNFDADTTVGK----INFYDYLGDSWGVLFSHPADFTPVCTTEVSAFAKLKPEFDKRNVKLIGLSVEDVESHEKWIQDIKEIAKVKNVGFPIIGD 146          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: TDXH_NANEQ (Probable peroxiredoxin OS=Nanoarchaeum equitans GN=NEQ191 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.669e-12
Identity = 31/80 (38.75%), Postives = 54/80 (67.50%), Query Frame = 2
Query:  377 VKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            ++L D+   K+ +LF +P DFT VC TE   F+  Y +F+ +NTE++G+S D VFSH+ W++  ++   + ++ +P+IAD
Sbjct:   20 MRLPDHYRGKWFVLFSHPADFTPVCTTEFVEFARNYDKFKAMNTELIGLSIDQVFSHIKWIEWIKEKFNV-EIPFPVIAD 98          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: TDXH1_SULME (Probable peroxiredoxin 1 OS=Sulfolobus metallicus PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.485e-12
Identity = 32/71 (45.07%), Postives = 50/71 (70.42%), Query Frame = 2
Query:  404 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            K++ LF +P DFT VC TE   FS  Y EF++LN E++G+S DS++SH+ W++  ++  G+  + +PLIAD
Sbjct:   30 KWLFLFAHPADFTPVCTTEFVGFSKVYEEFKRLNVELVGMSVDSIYSHIEWLKDIQERYGI-QVPFPLIAD 99          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: TDXH_METTH (Probable peroxiredoxin OS=Methanobacterium thermoautotrophicum GN=MTH_159 PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.552e-12
Identity = 36/102 (35.29%), Postives = 60/102 (58.82%), Query Frame = 2
Query:  311 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            PL+G+  P+   +         ++L D    K+ ILF +P DFT VC TE  AF + Y E  +L+ E++G+S D VFSH+ W++   ++    ++++P+IAD
Sbjct:    2 PLIGDKFPEMEVQTTHGP----MELPDEFEGKWFILFSHPADFTPVCTTEFVAFQEVYPELRELDCELVGLSVDQVFSHIKWIEWIAENLDT-EIEFPVIAD 98          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: REHYA_ORYSJ (1-Cys peroxiredoxin A OS=Oryza sativa subsp. japonica GN=Os07g0638300 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.324e-11
Identity = 34/100 (34.00%), Postives = 57/100 (57.00%), Query Frame = 2
Query:  317 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            +G+T P+   ++   +    +++ D++G  YVILF +P DFT VC TE+ A +    EF+K   ++LG+S D V SH  W++          + YP++AD
Sbjct:    6 IGDTVPNLELDSTHGK----IRIHDFVGDTYVILFSHPGDFTPVCTTELAAMAGYAKEFDKRGVKLLGISCDDVQSHKDWIKDIEAYKPGNRVTYPIMAD 101          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: REHYA_ORYSI (1-Cys peroxiredoxin A OS=Oryza sativa subsp. indica GN=OsI_27030 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.730e-11
Identity = 33/100 (33.00%), Postives = 57/100 (57.00%), Query Frame = 2
Query:  317 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            +G+T P+   ++   +    +++ D++G  Y+ILF +P DFT VC TE+ A +    EF+K   ++LG+S D V SH  W++          + YP++AD
Sbjct:    6 IGDTVPNLELDSTHGK----IRIHDFVGDTYIILFSHPGDFTPVCTTELAAMAGYAKEFDKRGVKLLGISCDDVQSHKDWIKDIEAYKPGNRVTYPIMAD 101          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: REHY_ARATH (1-Cys peroxiredoxin PER1 OS=Arabidopsis thaliana GN=PER1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 36/100 (36.00%), Postives = 53/100 (53.00%), Query Frame = 2
Query:  317 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            +G+T P+   E   D+     KL DY    + +LF +P DFT VC TE+ A +    EF+K   ++LG+S D V SH  W++          + YP+IAD
Sbjct:    6 LGDTVPNLEVETTHDK----FKLHDYFANSWTVLFSHPGDFTPVCTTELGAMAKYAHEFDKRGVKLLGLSCDDVQSHKDWIKDIEAFNHGSKVNYPIIAD 101          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: AHPC_BACSU (Alkyl hydroperoxide reductase subunit C OS=Bacillus subtilis GN=ahpC PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 36/101 (35.64%), Postives = 55/101 (54.46%), Query Frame = 2
Query:  314 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            L+G     F A+A  + EFI+V   D  G+ + +  FYP DF+FVCPTE+    ++Y   ++L  E+  VSTD+ F H  W  +  K   +  + Y +I D
Sbjct:    3 LIGKEVLPFEAKAFKNGEFIDVTNEDLKGQ-WSVFCFYPADFSFVCPTELEDLQEQYAALKELGVEVYSVSTDTHFVHKGWHDSSEK---ISKITYAMIGD 99          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: TDXH_PYRAB (Probable peroxiredoxin OS=Pyrococcus abyssi GN=PYRAB10420 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 34/82 (41.46%), Postives = 53/82 (64.63%), Query Frame = 2
Query:  377 VKLSDYIGK--KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            +KL D+  K  K+ ILF +P DFT VC TE      R  EF KL  E +G+S D VF+H+ W++  +++ G+ ++++P+IAD
Sbjct:   20 IKLPDHFTKQGKWFILFSHPADFTPVCTTEFYGMQKRLEEFRKLGVEPIGLSVDQVFAHIKWMEWIKENLGV-EIEFPIIAD 100          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: TDXH_METTM (Probable peroxiredoxin OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 35/102 (34.31%), Postives = 59/102 (57.84%), Query Frame = 2
Query:  311 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            PL+G+  P+   +         +KL      ++ ILF +P DFT VC TE  AF + Y E  +L+ E++G+S D VFSH+ W++   ++    ++++P+IAD
Sbjct:    2 PLIGDKFPEMEVQTTHGL----MKLPAEFKGRWFILFSHPADFTPVCTTEFVAFQEVYPELRELDCELVGLSVDQVFSHIKWIEWIEENLDT-EIEFPVIAD 98          
The following BLAST results are available for this feature:
BLAST of CX287482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
PRX1_YEAST2.043e-1233.00Mitochondrial peroxiredoxin PRX1 OS=Saccharomyces ... [more]
TDXH_NANEQ2.669e-1238.75Probable peroxiredoxin OS=Nanoarchaeum equitans GN... [more]
TDXH1_SULME3.485e-1245.07Probable peroxiredoxin 1 OS=Sulfolobus metallicus ... [more]
TDXH_METTH4.552e-1235.29Probable peroxiredoxin OS=Methanobacterium thermoa... [more]
REHYA_ORYSJ1.324e-1134.001-Cys peroxiredoxin A OS=Oryza sativa subsp. japon... [more]
REHYA_ORYSI1.730e-1133.001-Cys peroxiredoxin A OS=Oryza sativa subsp. indic... [more]
REHY_ARATH2.259e-1136.001-Cys peroxiredoxin PER1 OS=Arabidopsis thaliana G... [more]
AHPC_BACSU2.259e-1135.64Alkyl hydroperoxide reductase subunit C OS=Bacillu... [more]
TDXH_PYRAB2.951e-1141.46Probable peroxiredoxin OS=Pyrococcus abyssi GN=PYR... [more]
TDXH_METTM2.951e-1134.31Probable peroxiredoxin OS=Methanobacterium thermoa... [more]

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Properties
Property NameValue
Genbank descriptionC01010A08SK Veg1 Citrus clementina cDNA clone C01010A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287482 ID=CX287482; Name=CX287482; organism=Citrus clementina; type=EST; length=617bp
ATTTTGAGCAACAGATAGCCACACTTTGTTTTTCCCCGTTCGTTGACTCC
AGCTGAACAATAATACAACAACAAAAACAATGGCTTGCTCAGCTGCTTCT
GCTGCTGCCACGGCAACAGCCGCTCTCATTTCCTCTAACCCCAAGGCTTT
CTCTTCTTCCTCAATCTCCCCTTCTCAAAACCTAACCATTCCCCGCTCCT
TCTCCGGCCTCCGCAATCCCCTCCAGTCCCAGGTCCCCCGCCCCGTTTCT
CTTTCCCGCGGGTCCCGTTCTCGCAAGTCCTTCGTTGTCAAAGCATCCGT
TGAAATACCACCATTGGTGGGCAACACGGCACCTGATTTTGCTGCAGAGG
CTGTTTTCGATCAAGAGTTCATCAATGTCAAGCTTTCGGATTACATTGGG
AAGAAATATGTGATTCTCTTTTTCTACCCGTTGGACTTCACATTTGTTTG
CCCCACAGAAATCACTGCTTTCAGCGACCGATATACTGAATTTGAGAAGC
TAAACACAGAGATATTGGGTGTCTCAACCGACAGTGTGTTTTCACACTTG
GCATGGGTCCAAACAGACAGAAAGTCAGGTGGTCTTGGTGATTTGAAGTA
CCCACTAATTGCTGATA
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