CX287484

Overview
NameCX287484
Unique NameCX287484
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length591
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287484 vs. ExPASy Swiss-Prot
Match: CAHC_HORVU (Carbonic anhydrase, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.338e-26
Identity = 61/115 (53.04%), Postives = 75/115 (65.22%), Query Frame = 2
Query:  227 YGICLLRLQGLPVPCVGFSTWGSFRGSQCC*HCSTD---FIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNGSFELW 562
            Y +C L+++ + V  +G S  G  +        + D   F+EDWV+IG PAK KV TE    PF DQCT  EKEAVNVSL NLLTYPFV+EG+ N TL L GG+YDFV+G FE W
Sbjct:  210 YAVCALKVEVIVV--IGHSRCGGIKALLSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQNLLTYPFVKEGVTNGTLKLVGGHYDFVSGKFETW 322          

HSP 2 Score: 94.3597 bits (233), Expect = 4.609e-19
Identity = 42/69 (60.87%), Postives = 52/69 (75.36%), Query Frame = 3
Query:  123 SVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVP 329
            +VER+K GF  FK E Y+K P  +  L  GQ+PKYMVFAC+DSRVCPS  L  +PGEAF +RN+AN+VP
Sbjct:  126 AVERLKTGFEKFKTEVYDKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTIRNIANMVP 194          
BLAST of CX287484 vs. ExPASy Swiss-Prot
Match: CYNT_ECOLI (Carbonic anhydrase 1 OS=Escherichia coli (strain K12) GN=cynT PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.127e-12
Identity = 34/81 (41.98%), Postives = 51/81 (62.96%), Query Frame = 3
Query:  126 VERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPISLKTG*KLASL 368
            ++ I +GF+ F+RE + K  AL+ +LA  QSP+ +  +CSDSR+ P  V   +PG+ FV+RN  NIVP    + G   AS+
Sbjct:    1 MKEIIDGFLKFQREAFPKREALFKQLATQQSPRTLFISCSDSRLVPELVTQREPGDLFVIRNAGNIVPSYGPEPGGVSASV 81          
BLAST of CX287484 vs. ExPASy Swiss-Prot
Match: CYNT_ECO57 (Carbonic anhydrase 1 OS=Escherichia coli O157:H7 GN=cynT PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.127e-12
Identity = 34/81 (41.98%), Postives = 51/81 (62.96%), Query Frame = 3
Query:  126 VERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPISLKTG*KLASL 368
            ++ I +GF+ F+RE + K  AL+ +LA  QSP+ +  +CSDSR+ P  V   +PG+ FV+RN  NIVP    + G   AS+
Sbjct:    1 MKEIIDGFLKFQREAFPKREALFKQLATQQSPRTLFISCSDSRLVPELVTQREPGDLFVIRNAGNIVPSYGPEPGGVSASV 81          
BLAST of CX287484 vs. ExPASy Swiss-Prot
Match: CYNT_PSEAE (Carbonic anhydrase OS=Pseudomonas aeruginosa GN=cynT PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.033e-11
Identity = 34/78 (43.59%), Postives = 46/78 (58.97%), Query Frame = 3
Query:  135 IKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPISLKTG*KLASL 368
            I +GF+ F+R+ Y     L+  LA  Q+PK +  ACSDSRV P  +   +PGE FV+RN  NIVP    + G   AS+
Sbjct:    4 IIDGFLRFQRDAYPARSQLFKSLATRQAPKALFIACSDSRVVPELLTQREPGELFVIRNAGNIVPGYGPQPGGVSASV 81          
The following BLAST results are available for this feature:
BLAST of CX287484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
CAHC_HORVU1.338e-2653.04Carbonic anhydrase, chloroplastic OS=Hordeum vulga... [more]
CYNT_ECOLI7.127e-1241.98Carbonic anhydrase 1 OS=Escherichia coli (strain K... [more]
CYNT_ECO577.127e-1241.98Carbonic anhydrase 1 OS=Escherichia coli O157:H7 G... [more]
CYNT_PSEAE6.033e-1143.59Carbonic anhydrase OS=Pseudomonas aeruginosa GN=cy... [more]

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Properties
Property NameValue
Genbank descriptionC01010A10SK Veg1 Citrus clementina cDNA clone C01010A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287484 ID=CX287484; Name=CX287484; organism=Citrus clementina; type=EST; length=591bp
AAGCCATTGAAGCTCTCAAGAAACTTCTCAAGGAGAAGGAAGACTTGAAA
CCTGTTGCTGCTGCAAAAGTAGAGCAGATTACTGCGCAGCTACAGACTCC
ATCTGACACCAAAGCATTTGATTCCGTGGAGAGGATCAAAGAGGGCTTCA
TTCACTTCAAGAGAGAAAAATACGAGAAAAATCCAGCTCTGTACTCTGAG
CTCGCCAAAGGCCAAAGCCCGAAGTATATGGTATTTGCCTGCTCAGACTC
CAGGGTTTGCCCGTCCCATGTGTTGGATTTTCAACCTGGGGAAGCTTTCG
TGGTTCGCAATGTTGCTAACATTGTTCCACCGATTTCATTGAAGACTGGG
TGAAAATTGGCATCCCTGCCAAGTCTAAGGTGTTAACAGAGCATGGTGAC
AAGCCTTTTGGAGACCAATGCACATACTGTGAAAAGGAGGCGGTGAATGT
GTCCCTCAGTAATCTGCTAACGTATCCATTTGTGAGAGAAGGCTTGGTGA
ACAAAACTCTGGCACTCAAGGGTGGTTACTATGATTTCGTTAATGGATCA
TTCGAGCTCTGGGGTCTCGACTTTAGCCTTTCTCCTCCACT
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