CX287487

Overview
NameCX287487
Unique NameCX287487
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length557
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: FLS_MALDO (Flavonol synthase/flavanone 3-hydroxylase OS=Malus domestica GN=FLS PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.494e-25
Identity = 58/160 (36.25%), Postives = 94/160 (58.75%), Query Frame = 2
Query:    2 EVYLSELKNLALKILDQMAKALRMDPNDMKELFG--NGVQ*LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLITRETPTLFK 475
            E Y   L N+  K+   ++  L ++  ++K+  G  N    L++NYYPPCP+P+  +G+ +H D S +TIL+P N + GLQ  KDG+   V+ +P+A +++IGD +E+ +NG Y S+ HR TVN  K ++S+  F     D  +GP P L+       +K
Sbjct:  162 EEYAKHLHNVVEKLFRLLSLGLGLEGQELKKAAGGDNLEYLLKINYYPPCPRPDLALGVVAHTDMSTVTILVP-NDVQGLQACKDGRWYDVKYIPNALVIHIGDQMEIMSNGKYTSVLHRTTVNKDKTRISWPVFLEPPADHVVGPHPQLVNAVNQPKYK 320          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: GAO1B_WHEAT (Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.228e-24
Identity = 56/155 (36.13%), Postives = 89/155 (57.42%), Query Frame = 2
Query:    8 YLSELKNLALKILDQMAKALRMDPNDMKELFGNGVQ*LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLITRETPTLF 472
            Y SE+  L+L+I++ + ++L +     +  F      +R+NYYPPC +P + +G   HCD ++LTIL   N + GLQ+  +G+  ++RP  DAF+VNIGD     +NG Y+S  HRA VNS   + S A F   ++D  + P  +L+    P  +
Sbjct:  167 YCSEMSRLSLEIMEVLGESLGVGRAHYRRFFEGNDSIMRLNYYPPCQRPMETLGTGPHCDPTSLTILHQDN-VGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSKVPRKSLAFFLCPEMDKVVAPPGTLVDAANPRAY 320          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: GAO1A_WHEAT (Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.228e-24
Identity = 56/155 (36.13%), Postives = 89/155 (57.42%), Query Frame = 2
Query:    8 YLSELKNLALKILDQMAKALRMDPNDMKELFGNGVQ*LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLITRETPTLF 472
            Y SE+  L+L+I++ + ++L +     +  F      +R+NYYPPC +P + +G   HCD ++LTIL   N + GLQ+  +G+  ++RP  DAF+VNIGD     +NG Y+S  HRA VNS   + S A F   ++D  + P  +L+    P  +
Sbjct:  167 YCSEMSRLSLEIMEVLGESLGVGRAHYRRFFEGNDSIMRLNYYPPCQRPLETLGTGPHCDPTSLTILHQDN-VGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSRVPRKSLAFFLCPEMDKVVAPPGTLVDASNPRAY 320          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: GAO1D_WHEAT (Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.216e-24
Identity = 56/155 (36.13%), Postives = 89/155 (57.42%), Query Frame = 2
Query:    8 YLSELKNLALKILDQMAKALRMDPNDMKELFGNGVQ*LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLITRETPTLF 472
            Y SE+  L+L+I++ + ++L +     +  F      +R+NYYPPC +P + +G   HCD ++LTIL   N + GLQ+  +G+  ++RP  DAF+VNIGD     +NG Y+S  HRA VNS   + S A F   ++D  + P  +L+    P  +
Sbjct:  167 YCSEMSRLSLEIMEVLGESLGVGRAHYRRFFEGNDSIMRLNYYPPCQRPLETLGTGPHCDPTSLTILHQDN-VGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSRVPRKSLAFFLCPEMDKVVAPPGTLVDAANPRAY 320          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: LDOX_ARATH (Leucoanthocyanidin dioxygenase OS=Arabidopsis thaliana GN=LDOX PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.506e-24
Identity = 60/169 (35.50%), Postives = 99/169 (58.58%), Query Frame = 2
Query:    8 YLSELKNLALKILDQMAKALRMDPNDMKELFGNGVQ*L---RMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDG-ELGPAPSLITRETPTLFKRISVVDHFK 502
            Y   L+ LA K+   ++  L ++P+ +++  G   + L   ++NYYP CPQPE  +G+ +H D SALT +L  N + GLQ+  +GK V  + +PD+ +++IGD LE+ +NG Y+S+ HR  VN  K ++S+A F     D   L P P +++ E+P  F   +   H +
Sbjct:  172 YAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIE 339          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: ACCO_PRUMU (1-aminocyclopropane-1-carboxylate oxidase OS=Prunus mume GN=ACO1 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.191e-24
Identity = 56/150 (37.33%), Postives = 93/150 (62.00%), Query Frame = 2
Query:   17 ELKNLALKILDQMAKALRMDPNDMKELF--GNGVQ*-LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLITRE 457
            +L+ LA ++LD + + L ++   +K+ F   NG     +++ YPPCP PE + G+ +H DA  L +L   +++ GLQ+ KDG+ + V P+  + ++N+GD LEV TNG YRS+EHR    +   ++S A+FY    D  + PAP+L+ +E
Sbjct:  120 KLEKLAEQLLDLLCENLGLEKGYLKKAFYGTNGPTFGTKVSNYPPCPNPELIKGLRAHTDAGGLILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVINLGDQLEVITNGKYRSVEHRVIAQTDGTRMSIASFYNPGSDAVIYPAPTLVEKE 269          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: LDOX_MALDO (Leucoanthocyanidin dioxygenase OS=Malus domestica GN=ANS PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.392e-24
Identity = 59/169 (34.91%), Postives = 99/169 (58.58%), Query Frame = 2
Query:    8 YLSELKNLALKILDQMAKALRMDPNDMKELFGNGVQ*L---RMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATF-YGAKLDGELGPAPSLITRETPTLFKRISVVDHFK 502
            Y  +L+ LA K+L  ++  L +D   +++  G   + L   ++NYYP CPQPE  +G+ +H D SALT +L  N + GLQ+  +GK V  + +P++ +++IGD LE+ +NG Y+S+ HR  VN  K ++S+A F    K    L P P  ++ + P +F   +  +H +
Sbjct:  176 YAKQLRELATKVLKVLSLGLGLDEGRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFYEGKWVTAKCVPNSIVMHIGDTLEILSNGKYKSILHRGMVNKEKVRISWAVFCEPPKEKIILKPLPETVSEDEPAMFPPRTFAEHIQ 343          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: GAOX3_ARATH (Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana GN=20ox3 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.392e-24
Identity = 58/147 (39.46%), Postives = 85/147 (57.82%), Query Frame = 2
Query:    8 YLSELKNLALKILDQMAKALRMDPNDMKELFGNGVQ*LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLI 448
            Y   +  L+LKI++ +  +L ++    KE F +     R+NYYP C QPE  +G   HCD ++LTIL   +Q+ GLQ+  D K  ++ P P AF+VNIGD     TNG Y+S  HRA VNS +++ +FA F   K +  + P   L+
Sbjct:  189 YAEAMNTLSLKIMELLGMSLGVERRYFKEFFEDSDSIFRLNYYPQCKQPELALGTGPHCDPTSLTILHQ-DQVGGLQVFVDNKWQSIPPNPHAFVVNIGDTFMALTNGRYKSCLHRAVVNSERERKTFAFFLCPKGEKVVKPPEELV 334          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: ACCO2_DORSP (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Doritaenopsis sp. GN=ACO2 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.227e-23
Identity = 55/155 (35.48%), Postives = 93/155 (60.00%), Query Frame = 2
Query:    8 YLSELKNLALKILDQMAKALRMDPNDMKELFGNGVQ*L-----RMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLITRE 457
            +  EL+ LA ++LD + + L ++   +K +F  G   L     +++ YPPCP+P+ + G+ +H DA  + +L   +++ GLQ+ KD + + V PL  + +VNIGD LEV TNG Y+S+ HR    +   ++S A+FY    D  + PAP+L+ +E
Sbjct:  119 FARELEKLAERLLDLLCEDLGLEKGYLKRVFCGGSDGLPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDREWIEVPPLRYSIVVNIGDQLEVITNGKYKSVLHRVVAQTDGNRMSIASFYNPGSDAVIFPAPALVEKE 273          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: ACCO1_BRAJU (1-aminocyclopropane-1-carboxylate oxidase OS=Brassica juncea GN=ACO PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.227e-23
Identity = 56/151 (37.09%), Postives = 91/151 (60.26%), Query Frame = 2
Query:   20 LKNLALKILDQMAKALRMDPNDMKELFGNGVQ*----LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLITRET 460
            L+NLA  +LD + + L ++   +K++F +G +      +++ YP CP+PE + G+ +H DA  + +L   +++ GLQ+ KDG  + V PL  + ++N+GD LEV TNG Y+SM HR        ++S A+FY    D E+ PA SL  +ET
Sbjct:  124 LENLAEDLLDLLCENLGLEKGYLKKVF-HGTKGPTFGTKVSNYPACPKPEMIKGLRAHTDAGGIILLFQDDKVTGLQLLKDGDWIDVPPLNHSIVINLGDQLEVITNGRYKSMMHRVVTQKEGNRMSIASFYNPGSDAEISPASSLACKET 273          
The following BLAST results are available for this feature:
BLAST of CX287487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
FLS_MALDO8.494e-2536.25Flavonol synthase/flavanone 3-hydroxylase OS=Malus... [more]
GAO1B_WHEAT3.228e-2436.13Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN... [more]
GAO1A_WHEAT3.228e-2436.13Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN... [more]
GAO1D_WHEAT4.216e-2436.13Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN... [more]
LDOX_ARATH5.506e-2435.50Leucoanthocyanidin dioxygenase OS=Arabidopsis thal... [more]
ACCO_PRUMU7.191e-2437.331-aminocyclopropane-1-carboxylate oxidase OS=Prunu... [more]
LDOX_MALDO9.392e-2434.91Leucoanthocyanidin dioxygenase OS=Malus domestica ... [more]
GAOX3_ARATH9.392e-2439.46Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana G... [more]
ACCO2_DORSP1.227e-2335.481-aminocyclopropane-1-carboxylate oxidase 2 OS=Dor... [more]
ACCO1_BRAJU1.227e-2337.091-aminocyclopropane-1-carboxylate oxidase OS=Brass... [more]

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Properties
Property NameValue
Genbank descriptionC01010B01SK Veg1 Citrus clementina cDNA clone C01010B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287487 ID=CX287487; Name=CX287487; organism=Citrus clementina; type=EST; length=557bp
GGAAGTTTACTTATCAGAACTGAAAAATCTTGCCCTGAAAATCCTTGATC
AAATGGCTAAAGCTCTAAGAATGGATCCTAATGATATGAAAGAGTTGTTT
GGAAACGGGGTACAATAATTAAGGATGAATTATTATCCTCCTTGTCCGCA
ACCAGAGCAAGTTATCGGCATTAATTCCCATTGTGATGCCTCCGCACTTA
CCATCCTCCTCCCAATCAATCAGATGGATGGTCTCCAAATAAAGAAAGAT
GGAAAATTGGTTGCTGTTAGACCCCTTCCAGATGCCTTTATAGTCAACAT
TGGAGACATTTTAGAGGTTTTTACCAATGGAATTTACCGTAGTATGGAAC
ATCGTGCAACTGTGAACTCAATGAAGAAAAAATTATCTTTTGCTACATTT
TATGGTGCAAAATTAGATGGAGAATTGGGTCCAGCACCAAGTCTTATTAC
TCGAGAGACACCAACATTATTTAAGAGGATAAGTGTGGTAGATCACTTTA
AAAGATTTTTTTCAAGAGCTACGTGGAAAATCATTTTTTGATTTCTTGAG
AATTCAA
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