CX287487

Overview
NameCX287487
Unique NameCX287487
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length557
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14419 contig Ccv1_Contig14419:587..1143. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: ACCO3_CUCME (1-aminocyclopropane-1-carboxylate oxidase 3 OS=Cucumis melo GN=ACO3 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.092e-23
Identity = 57/172 (33.14%), Postives = 98/172 (56.98%), Query Frame = 2
Query:    8 YLSELKNLALKILDQMAKALRMDPNDMKELFGNGVQ*---LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLI--TRETPTLFKRISVVDHFKRF 508
            +  EL+ LA ++LD + + L ++   +K++F          +++ YPPCP+PE + G+ +H DA  L +L   +++ GL + KDGK V V P+  + ++N+GD LEV TNG Y+S+ HR        ++S A+FY    D  + PAP+L+   +E   L+ +    D+ K +
Sbjct:  118 FADELEKLAEEVLDLLCENLGLEKGYLKKVFYGSKGPNFGTKVSNYPPCPKPELIKGLRAHTDAGGLILLFQDDKVSGLHVLKDGKWVDVPPMHHSIVINLGDQLEVITNGKYKSVMHRVIAQEDGNRMSIASFYNPGNDAVIYPAPALVEGEQEKTKLYPKFVFDDYMKLY 289          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: ACCO1_ORYSJ (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Oryza sativa subsp. japonica GN=ACO1 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.092e-23
Identity = 56/174 (32.18%), Postives = 99/174 (56.90%), Query Frame = 2
Query:    8 YLSELKNLALKILDQMAKALRMDPNDMKELF----GNGVQ*LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLITRETPTLFKRISVVDHFKRFFSR 517
            + +EL+ LA ++LD + + L ++   + + F    G      +++ YPPCP+P+ V G+ +H DA  + +L   +++ GLQ+ KDG+ V V P+  + +VN+GD LEV TNG Y+S+ HR    +   ++S A+FY    D  + PAP+L+  E   +     V + + + + R
Sbjct:  122 FAAELETLAERLLDLLCENLGLEKGYLTKAFRGPAGAPTFGTKVSSYPPCPRPDLVEGLRAHTDAGGIILLFQDDRVGGLQLLKDGEWVDVPPMRHSIVVNLGDQLEVITNGRYKSVIHRVVAQTDGNRMSIASFYNPGSDAVISPAPALVKEEEAVVAYPKFVFEDYMKLYVR 295          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: ACCO1_ORYSI (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Oryza sativa subsp. indica GN=ACO1 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.092e-23
Identity = 56/174 (32.18%), Postives = 98/174 (56.32%), Query Frame = 2
Query:    8 YLSELKNLALKILDQMAKALRMDPNDMKELF----GNGVQ*LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLITRETPTLFKRISVVDHFKRFFSR 517
            + +EL+ LA ++LD + + L ++   + + F    G      +++ YPPCP+P+ V G+ +H DA  + +L   + + GLQ+ KDG+ V V P+  + +VN+GD LEV TNG Y+S+ HR    +   ++S A+FY    D  + PAP+L+  E   +     V + + + + R
Sbjct:  122 FAAELETLAERLLDLLCENLGLEKGYLTKAFRGPAGAPTFGTKVSSYPPCPRPDLVKGLRAHTDAGGIILLFQDDSVGGLQLLKDGEWVDVPPMRHSIVVNLGDQLEVITNGRYKSVMHRVVAQTDGNRMSIASFYNPGSDAVISPAPALVKEEEAVVAYPKFVFEDYMKLYVR 295          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: ACCO1_MALDO (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Malus domestica PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.733e-23
Identity = 58/172 (33.72%), Postives = 101/172 (58.72%), Query Frame = 2
Query:   17 ELKNLALKILDQMAKALRMDPNDMKELFGNGVQ*---LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLI---TRETPTLFKRISVVDHFKRFFS 514
            EL+ LA K+LD + + L ++   +K++F          +++ YPPCP+P+ + G+ +H DA  + +L   +++ GLQ+ KDG+ V V P+  + ++N+GD +EV TNG Y+S+ HR    S   ++S A+FY    D  + PAP+++   T + PT  K   V D + + +S
Sbjct:  120 ELEKLAEKLLDLLCENLGLEKGYLKKVFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHSDAGGIILLFQDDKVSGLQLLKDGEWVDVPPMHHSIVINLGDQIEVITNGKYKSVMHRVIAQSDGTRMSIASFYNPGNDSFISPAPAVLEKKTEDAPTYPK--FVFDDYMKLYS 289          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: IDS3_HORVU (2'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vulgare GN=IDS3 PE=1 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 4.661e-23
Identity = 55/171 (32.16%), Postives = 97/171 (56.73%), Query Frame = 2
Query:    2 EVYLSELKNLALKILDQMAKALRMDPNDMKELFGNGVQ*LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLITRETPTLFKRISVVDHFKRFFS 514
            E + S+ +++  ++L  + + + +  +  +     G   L +N+YP CP P++ +G   HCD + +T+LLP   ++GL++   G  + V P P+AF+VN G  LEV TNG+ +S+EHRA  NS   + S ATF     +  +GPA   +++E P  + R ++   F R ++
Sbjct:  150 EKFTSQTRDVGKELLRLLCEGMGIQADYFEGDLSGGNVILNINHYPSCPNPDKALGQPPHCDRNLITLLLP-GAVNGLEVSYKGDWIKVDPAPNAFVVNFGQQLEVVTNGLLKSIEHRAMTNSALARTSVATFIMPTQECLIGPAKEFLSKENPPCY-RTTMFRDFMRIYN 318          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: DV4H_CATRO (Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 4.661e-23
Identity = 58/177 (32.77%), Postives = 100/177 (56.50%), Query Frame = 2
Query:    8 YLSELKNLALKILDQMAKALRMDPNDMKELFGNGVQ*LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGE-------LGPAPSLITRETPTLFKRISVVDHFKRFFSR 517
            Y + ++NL L + + +++AL + PN ++E+       L  +YYP CPQPE   G + H D+  LTIL+  +Q+ GLQI  + + + V  +P A ++NI D+L++ TN  ++S+EHR   N +  ++S A  +G K   +        GP   LI+ E P ++K ++V D     F++
Sbjct:  211 YSNYVRNLGLILFELLSEALGLKPNHLEEMDCAEGLILLGHYYPACPQPELTFGTSKHSDSGFLTILMQ-DQIGGLQILLENQWIDVPFIPGALVINIADLLQLITNDKFKSVEHRVLANKVGPRISVAVAFGIKTQTQEGVSPRLYGPIKELISEENPPIYKEVTVKDFITIRFAK 386          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: ACCO_DENCR (1-aminocyclopropane-1-carboxylate oxidase OS=Dendrobium crumenatum GN=ACO PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.661e-23
Identity = 54/151 (35.76%), Postives = 89/151 (58.94%), Query Frame = 2
Query:   20 LKNLALKILDQMAKALRMDPNDMKELFGNGVQ*L-----RMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLITRE 457
            L+ LA ++LD + + L ++   +K +F  G   L     +++ YPPCP+PE + G+ +H DA  + +L   + + GLQ+ KD + + V P+  + +VNIGD LEV TNG Y+S+ HR    +   ++S A+FY    D  + PAP L+ +E
Sbjct:  117 LEKLAERLLDLLCENLGLEKGYLKRVFCGGSDGLPTFGTKVSNYPPCPKPELIKGLRAHTDAGGIILLFQDDTVSGLQLLKDEEWIDVPPMRHSIVVNIGDQLEVITNGKYKSVMHRVVAQTNGNRMSIASFYNPGSDAVIFPAPELVEKE 267          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: ACCO_ACTDE (1-aminocyclopropane-1-carboxylate oxidase OS=Actinidia deliciosa GN=ACO PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.661e-23
Identity = 52/153 (33.99%), Postives = 91/153 (59.48%), Query Frame = 2
Query:    8 YLSELKNLALKILDQMAKALRMDPNDMKELFGNG---VQ*LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLITRE 457
            +  +L+ LA ++LD + + + ++   +K+ F          +++ YPPCP+PE + G+ +H DA  + +L   N++ GLQ+ KDG+ + V P+  + ++NIGD LEV TNG Y+S+ HR        ++S A+FY    D  + PAP+L+ +E
Sbjct:  117 FAEKLEKLAEQLLDLLCENVGLEKGYLKKAFYGSKGPTFGTKVSNYPPCPRPELIKGLRAHTDAGGIILLFQDNKVSGLQLLKDGEWIDVPPMKHSIVINIGDQLEVITNGKYKSVMHRVIAQPDGNRMSIASFYNPGSDAVMYPAPALVDKE 269          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: IDS2_HORVU (Mugineic-acid 3-dioxygenase OS=Hordeum vulgare GN=IDS2 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.038e-22
Identity = 56/166 (33.73%), Postives = 94/166 (56.63%), Query Frame = 2
Query:    8 YLSELKNLALKILDQMAKALRMDPNDMKELFGNGVQ*LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLITRETPTLFKRISVVDHFKR 505
            Y S  + +A++IL  + + L + P+        G   + +NYYPP P P + +G+  HCD   +T+LLP   + GL+I   G  + V+P+P++ ++N G  LEV TNG  +++EHRA  N  + +LS A+F     D  +GPA   ++ + P  ++ ++ V  FKR
Sbjct:  151 YTSLARGVAMEILRLLCEGLGLRPDFFVGDISGGRVVVDINYYPPSPNPSRTLGLPPHCDRDLMTVLLP-GAVPGLEIAYKGGWIKVQPVPNSLVINFGLQLEVVTNGYLKAVEHRAATNFAEPRLSVASFIVPADDCVVGPAEEFVSEDNPPRYRTLT-VGEFKR 314          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: ACCO_PERAE (1-aminocyclopropane-1-carboxylate oxidase OS=Persea americana GN=ACO PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.356e-22
Identity = 53/155 (34.19%), Postives = 91/155 (58.71%), Query Frame = 2
Query:    8 YLSELKNLALKILDQMAKALRMDPNDMKELFGNGVQ*L-----RMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLITRE 457
            +  +L+ LA ++LD + + L ++   +K  F      L     +++ YPPCP+PE   G+ +H DA  L +L   +++ GLQ+ KDG+ V V P+  + ++N+GD +EV TNG Y+S+ HR    +   ++S A+FY    D  + PAP+L+ +E
Sbjct:  116 FAEKLEKLAEQVLDLLCENLGLEKGYLKMAFAGTTTGLPTFGTKVSNYPPCPRPELFKGLRAHTDAGGLILLFQDDRVAGLQLLKDGEWVDVPPMNHSIVINLGDQVEVITNGKYKSVMHRVVAQTDGNRMSLASFYNPGSDAVIFPAPALVEKE 270          
The following BLAST results are available for this feature:
BLAST of CX287487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
ACCO3_CUCME2.092e-2333.141-aminocyclopropane-1-carboxylate oxidase 3 OS=Cuc... [more]
ACCO1_ORYSJ2.092e-2332.181-aminocyclopropane-1-carboxylate oxidase 1 OS=Ory... [more]
ACCO1_ORYSI2.092e-2332.181-aminocyclopropane-1-carboxylate oxidase 1 OS=Ory... [more]
ACCO1_MALDO2.733e-2333.721-aminocyclopropane-1-carboxylate oxidase 1 OS=Mal... [more]
IDS3_HORVU4.661e-2332.162'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vu... [more]
DV4H_CATRO4.661e-2332.77Deacetoxyvindoline 4-hydroxylase OS=Catharanthus r... [more]
ACCO_DENCR4.661e-2335.761-aminocyclopropane-1-carboxylate oxidase OS=Dendr... [more]
ACCO_ACTDE4.661e-2333.991-aminocyclopropane-1-carboxylate oxidase OS=Actin... [more]
IDS2_HORVU1.038e-2233.73Mugineic-acid 3-dioxygenase OS=Hordeum vulgare GN=... [more]
ACCO_PERAE1.356e-2234.191-aminocyclopropane-1-carboxylate oxidase OS=Perse... [more]

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Properties
Property NameValue
Genbank descriptionC01010B01SK Veg1 Citrus clementina cDNA clone C01010B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287487 ID=CX287487; Name=CX287487; organism=Citrus clementina; type=EST; length=557bp
GGAAGTTTACTTATCAGAACTGAAAAATCTTGCCCTGAAAATCCTTGATC
AAATGGCTAAAGCTCTAAGAATGGATCCTAATGATATGAAAGAGTTGTTT
GGAAACGGGGTACAATAATTAAGGATGAATTATTATCCTCCTTGTCCGCA
ACCAGAGCAAGTTATCGGCATTAATTCCCATTGTGATGCCTCCGCACTTA
CCATCCTCCTCCCAATCAATCAGATGGATGGTCTCCAAATAAAGAAAGAT
GGAAAATTGGTTGCTGTTAGACCCCTTCCAGATGCCTTTATAGTCAACAT
TGGAGACATTTTAGAGGTTTTTACCAATGGAATTTACCGTAGTATGGAAC
ATCGTGCAACTGTGAACTCAATGAAGAAAAAATTATCTTTTGCTACATTT
TATGGTGCAAAATTAGATGGAGAATTGGGTCCAGCACCAAGTCTTATTAC
TCGAGAGACACCAACATTATTTAAGAGGATAAGTGTGGTAGATCACTTTA
AAAGATTTTTTTCAAGAGCTACGTGGAAAATCATTTTTTGATTTCTTGAG
AATTCAA
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