CX287487

Overview
NameCX287487
Unique NameCX287487
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length557
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: ACCO1_ARATH (1-aminocyclopropane-1-carboxylate oxidase OS=Arabidopsis thaliana GN=ACO PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 8.790e-22
Identity = 53/154 (34.42%), Postives = 94/154 (61.04%), Query Frame = 2
Query:    8 YLSELKNLALKILDQMAKALRMDPNDMKELFGNGVQ*L---RMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRA-TVNSMKKKLSFATFYGAKLDGELGPAPSLITRE 457
            +  +++ L+ ++LD + + L ++   +K++F    +     +++ YPPCP P+ V G+ +H DA  + +L   +++ GLQ+ KDG+ V V P+  + +VN+GD LEV TNG Y+S+EHR  +    + ++S A+FY    D  + PAP LI +E
Sbjct:  117 FAGKIEKLSEELLDLLCENLGLEKGYLKKVFYGSKRPTFGTKVSNYPPCPNPDLVKGLRAHTDAGGIILLFQDDKVSGLQLLKDGEWVDVPPVKHSIVVNLGDQLEVITNGKYKSVEHRVLSQTDGEGRMSIASFYNPGSDSVIFPAPELIGKE 270          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: ACCO4_PETHY (1-aminocyclopropane-1-carboxylate oxidase 4 OS=Petunia hybrida GN=ACO4 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.148e-21
Identity = 53/176 (30.11%), Postives = 100/176 (56.82%), Query Frame = 2
Query:    8 YLSELKNLALKILDQMAKALRMDPNDMKELFGNGVQ*---LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLITR---ETPTLFKRISVVDHFKRFFSR 517
            +   L+ LA ++LD + + L ++   +K+ F          +++ YPPCP+P+ + G+ +H DA  + +L   +++ GLQ+ KD + + V P+  + ++N+GD LEV TNG Y+S+ HR    +   ++S A+FY    D  + PAP+L+ R   E   ++ +  V D + + ++R
Sbjct:  117 FAKRLEKLAEELLDLLCENLGLEKGYLKKAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDDQWIDVPPMRHSIVINLGDQLEVITNGKYKSVPHRVIAQTDGTRMSLASFYNPASDAVIYPAPALVERDAEENKQIYPKF-VFDDYMKLYAR 291          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: LDOX_PERFR (Leucoanthocyanidin dioxygenase OS=Perilla frutescens GN=ANS PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.958e-21
Identity = 60/176 (34.09%), Postives = 96/176 (54.55%), Query Frame = 2
Query:    8 YLSELKNLALKILDQMAKALRMDPNDMKELFGNG---VQ*LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATF-YGAKLDGELGPAPSLITRETPTLFKRISVVDHFKRFFSRAT 523
            Y  +L+ LA KIL  ++  L ++   +++  G     +  +++N+YP CPQPE  +G  +H D SALT +L  N + GLQ+  + K V  + +P++ I++IGD LE+ +NG Y+S+ HR  VN  K ++S+A F    K    L P P  ++   P  F   +   H K    R T
Sbjct:  178 YAKQLRALATKILSVLSIGLGLEKGRLEKEVGGAEDLIVQMKINFYPKCPQPELALGWEAHTDVSALTFILH-NMVPGLQLFYEDKWVTAKCVPNSIIMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKEKIVLQPLPETVSEVEPPRFPPRTFAQHLKHKLFRKT 352          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: G2OX8_ARATH (Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 1.958e-21
Identity = 53/133 (39.85%), Postives = 81/133 (60.90%), Query Frame = 2
Query:    2 EVYLSELKNLALKILDQMAKALRMDPNDMKELFGNGVQ*LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATF 400
            E + SE + LA  + + +A+    + +  KE        LRMN YPPCP+P +V G+  H D+  LTIL   +Q+ GLQ+ KD + +AV+P P A I+NIGD+ + ++NG+Y+S+EHR   N   ++ S A F
Sbjct:  156 EKFASESEALAYMLAEVLAEKSGQNSSFFKENCVRNTCYLRMNRYPPCPKPSEVYGLMPHTDSDFLTILYQ-DQVGGLQLIKDNRWIAVKPNPKALIINIGDLFQAWSNGMYKSVEHRVMTNPKVERFSTAYF 287          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: FLS1_ARATH (Flavonol synthase/flavanone 3-hydroxylase OS=Arabidopsis thaliana GN=FLS1 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.958e-21
Identity = 56/170 (32.94%), Postives = 95/170 (55.88%), Query Frame = 2
Query:    2 EVYLSELKNLALKILDQMAKALRMDPNDMKELFGNGVQ*--LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLITRETPTLFKRISVVDHFKR 505
            E Y   +K L+  +L  ++  L +  + +KE  G  +    +++NYYPPCP+P+  +G+ +H D S +T+L+P N++ GLQ+ KD        +P A IV+IGD +   +NG Y+++ HR TV+  K ++S+  F     +  +GP P L   + P  FK  +  D+  R
Sbjct:  160 EEYAVHVKKLSETLLGILSDGLGLKRDALKEGLGGEMAEYMMKINYYPPCPRPDLALGVPAHTDLSGITLLVP-NEVPGLQVFKDDHWFDAEYIPSAVIVHIGDQILRLSNGRYKNVLHRTTVDKEKTRMSWPVFLEPPREKIVGPLPELTGDDNPPKFKPFAFKDYSYR 328          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: ACCH3_SOLLC (1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.958e-21
Identity = 56/173 (32.37%), Postives = 91/173 (52.60%), Query Frame = 2
Query:    8 YLSELKNLALKILDQMAKALRMDPNDMKELFGNGVQ*LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGA---KLDGELGPAPSLITRETPTLFKRISVVDHFKRFFSR 517
            +  ++K L   +L+ +++ L +D + +K+           NYYPPCPQPE  +G   H D   +TILL  + M GLQ+      V V P P + +VNIGD L++ +N  Y S+EHRA  N++  ++S   F+G    +     GP   L++ + P  ++  +V DH     +R
Sbjct:  179 FSKDVKKLGFTLLELLSEGLGLDRSYLKDYMDCFHLFCSCNYYPPCPQPELTMGTIQHTDIGFVTILLQ-DDMGGLQVLHQNHWVDVPPTPGSLVVNIGDFLQLLSNDKYLSVEHRAISNNVGSRMSITCFFGESPYQSSKLYGPITELLSEDNPPKYRATTVKDHTSYLHNR 350          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: LDOX_VITVI (Leucoanthocyanidin dioxygenase OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.558e-21
Identity = 52/134 (38.81%), Postives = 86/134 (64.18%), Query Frame = 2
Query:    8 YLSELKNLALKILDQMAKALRMDPNDMKELFGNGVQ*L---RMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATF 400
            Y  +L++LA KIL  ++  L ++   +++  G   + L   ++NYYP CPQPE  +G+ +H D SALT +L  N + GLQ+  +GK V  + +P++ I++IGD +E+ +NG Y+S+ HR  VN  K ++S+A F
Sbjct:  178 YSVKLRSLATKILSVLSLGLGLEEGRLEKEVGGMEELLLQKKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFYEGKWVTAKCVPNSIIMHIGDTIEILSNGKYKSILHRGLVNKEKVRISWAVF 310          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: GAOX2_ARATH (Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana GN=20ox2 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.558e-21
Identity = 52/149 (34.90%), Postives = 85/149 (57.05%), Query Frame = 2
Query:    8 YLSELKNLALKILDQMAKALRMDPNDMKELFGNGVQ*LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLITR 454
            Y   + +L+LKI++ +  +L ++ +  +  F      +R+N+YPPC  P+  +G   HCD S+LTIL   + ++GLQ+  D +  ++RP P AF+VNIGD     +NGI++S  HRA VN    + S A F   K D  + P   ++ +
Sbjct:  188 YCEAMSSLSLKIMELLGLSLGVNRDYFRGFFEENDSIMRLNHYPPCQTPDLTLGTGPHCDPSSLTILHQ-DHVNGLQVFVDNQWQSIRPNPKAFVVNIGDTFMALSNGIFKSCLHRAVVNRESARKSMAFFLCPKKDKVVKPPSDILEK 335          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: ACCO4_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 4 OS=Solanum lycopersicum GN=ACO4 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.558e-21
Identity = 54/170 (31.76%), Postives = 96/170 (56.47%), Query Frame = 2
Query:    8 YLSELKNLALKILDQMAKALRMDPNDMKELFGNGVQ*---LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLITRETPTLFKRISVVDHFKRF 508
            +   L+ LA ++LD + + L ++   +K  F          +++ YPPCP+P+ + G+ +H DA  + +L   +++ GLQ+ KD + + V P+  + +VN+GD LEV TNG Y+S+ HR    +   ++S A+FY    D  + PAPSLI  E+  ++ +    D+ K +
Sbjct:  117 FAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDEQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQTDGTRMSLASFYNPGNDAVIYPAPSLI-EESKQVYPKFVFDDYMKLY 285          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: LDOX_PETHY (Leucoanthocyanidin dioxygenase OS=Petunia hybrida GN=ANT17 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.340e-21
Identity = 59/168 (35.12%), Postives = 96/168 (57.14%), Query Frame = 2
Query:    8 YLSELKNLALKILDQMAKALRMDPNDMKELFGNGVQ*L----RMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATF-YGAKLDGELGPAPSLITRETPTLFKRISVVDH 496
            Y  +++ LA KIL  ++  L ++   +++  G G++ L    ++NYYP CPQPE  +G+ +H D SALT +L  N + GLQ+  +G+ V  + +P++ I++IGD +E+ +NG Y+S+ HR  VN  K + S+A F    K    L P P  +T   P  F   +   H
Sbjct:  176 YAKQIRALATKILTVLSIGLGLEEGRLEKEVG-GMEDLLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFYEGQWVTAKCVPNSIIMHIGDTIEILSNGKYKSILHRGVVNKEKVRFSWAIFCEPPKEKIILKPLPETVTEAEPPRFPPRTFAQH 341          
The following BLAST results are available for this feature:
BLAST of CX287487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
ACCO1_ARATH8.790e-2234.421-aminocyclopropane-1-carboxylate oxidase OS=Arabi... [more]
ACCO4_PETHY1.148e-2130.111-aminocyclopropane-1-carboxylate oxidase 4 OS=Pet... [more]
LDOX_PERFR1.958e-2134.09Leucoanthocyanidin dioxygenase OS=Perilla frutesce... [more]
G2OX8_ARATH1.958e-2139.85Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis th... [more]
FLS1_ARATH1.958e-2132.94Flavonol synthase/flavanone 3-hydroxylase OS=Arabi... [more]
ACCH3_SOLLC1.958e-2132.371-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
LDOX_VITVI2.558e-2138.81Leucoanthocyanidin dioxygenase OS=Vitis vinifera P... [more]
GAOX2_ARATH2.558e-2134.90Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana G... [more]
ACCO4_SOLLC2.558e-2131.761-aminocyclopropane-1-carboxylate oxidase 4 OS=Sol... [more]
LDOX_PETHY3.340e-2135.12Leucoanthocyanidin dioxygenase OS=Petunia hybrida ... [more]

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Properties
Property NameValue
Genbank descriptionC01010B01SK Veg1 Citrus clementina cDNA clone C01010B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287487 ID=CX287487; Name=CX287487; organism=Citrus clementina; type=EST; length=557bp
GGAAGTTTACTTATCAGAACTGAAAAATCTTGCCCTGAAAATCCTTGATC
AAATGGCTAAAGCTCTAAGAATGGATCCTAATGATATGAAAGAGTTGTTT
GGAAACGGGGTACAATAATTAAGGATGAATTATTATCCTCCTTGTCCGCA
ACCAGAGCAAGTTATCGGCATTAATTCCCATTGTGATGCCTCCGCACTTA
CCATCCTCCTCCCAATCAATCAGATGGATGGTCTCCAAATAAAGAAAGAT
GGAAAATTGGTTGCTGTTAGACCCCTTCCAGATGCCTTTATAGTCAACAT
TGGAGACATTTTAGAGGTTTTTACCAATGGAATTTACCGTAGTATGGAAC
ATCGTGCAACTGTGAACTCAATGAAGAAAAAATTATCTTTTGCTACATTT
TATGGTGCAAAATTAGATGGAGAATTGGGTCCAGCACCAAGTCTTATTAC
TCGAGAGACACCAACATTATTTAAGAGGATAAGTGTGGTAGATCACTTTA
AAAGATTTTTTTCAAGAGCTACGTGGAAAATCATTTTTTGATTTCTTGAG
AATTCAA
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