CX287487

Overview
NameCX287487
Unique NameCX287487
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length557
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14419 contig Ccv1_Contig14419:587..1143. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: GAOX1_ARATH (Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana GN=20ox1 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 3.340e-21
Identity = 53/147 (36.05%), Postives = 85/147 (57.82%), Query Frame = 2
Query:    8 YLSELKNLALKILDQMAKALRMDPNDMKELFGNGVQ*LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLI 448
            Y   + +L+LKI++ +  +L +  +  +E F      +R+NYYPPC +P+  +G   HCD ++LTIL   + ++GLQ+  + +  ++RP P AF+VNIGD     +N  Y+S  HRA VNS  ++ S A F   K D  + P   L+
Sbjct:  190 YCEAMSSLSLKIMELLGLSLGVKRDYFREFFEENDSIMRLNYYPPCIKPDLTLGTGPHCDPTSLTILHQ-DHVNGLQVFVENQWRSIRPNPKAFVVNIGDTFMALSNDRYKSCLHRAVVNSESERKSLAFFLCPKKDRVVTPPRELL 335          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: FLS_MATIN (Flavonol synthase/flavanone 3-hydroxylase (Fragment) OS=Matthiola incana PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 7.441e-21
Identity = 53/165 (32.12%), Postives = 93/165 (56.36%), Query Frame = 2
Query:    2 EVYLSELKNLALKILDQMAKALRMDPNDMKELFGNGVQ*LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLITRETPTLFKRISVVDH 496
            E Y   +K L+ KI++ +++ L +    +KE+ G     + +N+YPP P  +   G+  H D + LT+++  N++ GLQ+ KD   + V  +P A IVNIGD + + +NG Y+++ H+ TV+  K ++S+        D  +GP P L + + P  FK I+  D+
Sbjct:  117 EEYARHVKTLSEKIMEWLSEGLGLGREAIKEVNGCWYV-MNINHYPPYPHSDSFNGLEPHTDINGLTLIIT-NEIPGLQVFKDDHWIEVEYIPSAIIVNIGDQIMMLSNGKYKNVLHKTTVDKEKTRMSWPVLVSPTYDMVVGPLPELTSEDDPPKFKPIAYKDY 279          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: FNSI_PETCR (Flavone synthase OS=Petroselinum crispum GN=FNSI PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.719e-21
Identity = 51/135 (37.78%), Postives = 83/135 (61.48%), Query Frame = 2
Query:    2 EVYLSELKNLALKILDQMAKALRMDPNDMKELFGNGVQ*LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDG--KLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATF 400
            EVY  +L  L  K+L+ +++A+ ++  D+ +   +  Q + +NYYP CPQP+  +G+  H D   +TILL  + + GLQ  +DG    + V+P+  AF+VN+GD     +NG +R+ +H+A VNS   +LS ATF
Sbjct:  159 EVYSEKLMVLGAKLLEVLSEAMGLEKGDLTKACVDMEQKVLINYYPTCPQPDLTLGVRRHTDPGTITILLQ-DMVGGLQATRDGGKTWITVQPVEGAFVVNLGDHGHYLSNGRFRNADHQAVVNSTSSRLSIATF 292          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: ACCO_PEA (1-aminocyclopropane-1-carboxylate oxidase OS=Pisum sativum GN=ACO PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.719e-21
Identity = 52/168 (30.95%), Postives = 96/168 (57.14%), Query Frame = 2
Query:   17 ELKNLALKILDQMAKALRMDPNDMKELFGNGVQ*---LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLI-TRETPTLFKRISVVDHFKRF 508
            +L+ LA ++LD + + L ++   +K+ F          +++ YPPCP+PE + G+ +H DA  + +L   +++ GLQ+ KD + + V P+  + ++N+GD LEV TNG Y+S+ HR    +   ++S A+FY    D  + PA +L+   ET  ++ +    D+ K +
Sbjct:  120 KLEELAEELLDLLCENLGLEKGYLKKAFYGSKGPNFGTKVSNYPPCPKPELIKGLRAHTDAGGIILLFQDDKVSGLQLLKDDQWIDVPPMRHSIVINLGDQLEVITNGKYKSVMHRVIAQTDGARMSIASFYNPGDDAVISPASTLLKENETSEVYPKFVFDDYMKLY 287          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: FL3H_PETCR (Flavanone 3-dioxygenase OS=Petroselinum crispum GN=FHT PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.165e-20
Identity = 56/174 (32.18%), Postives = 98/174 (56.32%), Query Frame = 2
Query:    2 EVYLSELKNLALKILDQMAKALRMDPNDMKELFGNGVQ*LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDG--KLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLITRETPTLFKRISVVDHFKRFFSR 517
            E+Y  EL  LA K+L+ +++A+ ++   + +   +  Q + +NYYP CPQP   +G+  H D   +T+LL  +Q+ GLQ  +DG    + V+P+  AF+VN+GD     +NG +++ +H+A VNS   ++S ATF     +  + P   +   E   + + I+  + +KR  SR
Sbjct:  159 EMYSDELMALACKLLEVLSEAMGLEKEGLTKACVDMDQKVIVNYYPKCPQPNLTLGLKRHTDPGTITLLLQ-DQVGGLQATRDGGKTWITVQPVEGAFVVNLGDHGHYLSNGRFKNADHQAVVNSNSSRMSIATFQNPAPNATVYPL-KIREGEKAVMEEPITFAEMYKRKMSR 330          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: ACCH2_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 2 OS=Arabidopsis thaliana GN=At1g06640 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.828e-20
Identity = 55/173 (31.79%), Postives = 101/173 (58.38%), Query Frame = 2
Query:    8 YLSELKNLALKILDQMAKALRMDPNDMKELFGNGVQ*LRM--NYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVN-SMKKKLSFATFYGAKLDGE---LGPAPSLITRETPTLFKRISVVDHFKRF 508
            Y  ++  L   + + +++AL ++PN +K++    ++ LRM  +Y+PPCP+P+   G + H D S LT+LLP N ++GLQ+ ++G    V  +P A I+NIGD+L++ TN  + S++HR   N + + ++S A F+   +       GP   L++ E P  ++  ++ D+   F
Sbjct:  184 YSKQVMILGEFLFELLSEALGLNPNHLKDM--ECLKGLRMLCHYFPPCPEPDLTFGTSKHSDGSFLTVLLPDN-IEGLQVCREGYWFDVPHVPGALIINIGDLLQLITNDKFISLKHRVLANRATRARVSVACFFHTHVKPNPRVYGPIKELVSEENPPKYRETTIRDYATYF 353          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: FL3H_MALDO (Naringenin,2-oxoglutarate 3-dioxygenase OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.693e-20
Identity = 58/172 (33.72%), Postives = 99/172 (57.56%), Query Frame = 2
Query:    8 YLSELKNLALKILDQMAKALRMDPNDMKELFGNGVQ*LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQ-IKKDGKL-VAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLITRETPTLFKRISVVDHFKRFFSR 517
            Y  EL  LA K+L  +++A+ +D   + +   +  Q + +N+YP CPQP+  +G+  H D   +T+LL  +Q+ GLQ  + DGK  + V+P+  AF+VN+GD   + +NG +++ +H+A VNS   +LS ATF     +  + P  S+   E P L   I+  + +K+  S+
Sbjct:  161 YSDELMGLACKLLGVLSEAMGLDTEALTKACVDMDQKVVVNFYPKCPQPDLTLGLKRHTDPGTITLLLQ-DQVGGLQATRDDGKTWITVQPVEGAFVVNLGDHGHLLSNGRFKNADHQAVVNSNSSRLSIATFQNPAQEAIVYPL-SVREGEKPILEAPITYTEMYKKKMSK 330          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: FL3H_ARATH (Naringenin,2-oxoglutarate 3-dioxygenase OS=Arabidopsis thaliana GN=F3H PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.823e-20
Identity = 58/174 (33.33%), Postives = 97/174 (55.75%), Query Frame = 2
Query:    2 EVYLSELKNLALKILDQMAKALRMDPNDMKELFGNGVQ*LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKD-GKL-VAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLITRETPTLFKRISVVDHFKRFFSR 517
            E Y   L +LA K+L+ +++A+ ++   +     +  Q + +NYYP CPQP+  +G+  H D   +T+LL  +Q+ GLQ  +D GK  + V+P+  AF+VN+GD     +NG +++ +H+A VNS   +LS ATF     D  + P   +   E   L + I+  + +KR   R
Sbjct:  158 EEYSERLMSLACKLLEVLSEAMGLEKESLTNACVDMDQKIVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQ-DQVGGLQATRDNGKTWITVQPVEGAFVVNLGDHGHFLSNGRFKNADHQAVVNSNSSRLSIATFQNPAPDATVYPL-KVREGEKAILEEPITFAEMYKRKMGR 329          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: ACCO1_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Solanum lycopersicum GN=ACO1 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 4.823e-20
Identity = 49/153 (32.03%), Postives = 88/153 (57.52%), Query Frame = 2
Query:    8 YLSELKNLALKILDQMAKALRMDPNDMKELFGNGVQ*---LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLITRE 457
            +   L+ LA ++LD + + L ++   +K  F          +++ YPPCP+P+ + G+ +H DA  + +L   +++ GLQ+ KD + + V P+  + +VN+GD LEV TNG Y+S+ HR    +   ++S A+FY    D  + PA +L+ +E
Sbjct:  117 FAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDEQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVLHRVIAQTDGTRMSLASFYNPGSDAVIYPAKTLVEKE 269          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: G3OX1_ARATH (Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA4 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 6.300e-20
Identity = 52/173 (30.06%), Postives = 97/173 (56.07%), Query Frame = 2
Query:    2 EVYLSELKNLALKILDQMAKALRMDPNDMKEL-----FGNGVQ*LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDG-KLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLITRETPTLFKRISVVDHFK 502
            E Y   +K LA K++     +L +   D++              L++N+YP CP+P++ +G+ +H D++ LTIL   N   GLQ+ +D    V V P P + +VN+GD+  + +NG+++S+ HRA VN  + +LS A  +G + D ++ P P L++     L++ ++  ++ +
Sbjct:  168 EEYEEHMKKLASKLMWLALNSLGVSEEDIEWASLSSDLNWAQAALQLNHYPVCPEPDRAMGLAAHTDSTLLTILYQ-NNTAGLQVFRDDLGWVTVPPFPGSLVVNVGDLFHILSNGLFKSVLHRARVNQTRARLSVAFLWGPQSDIKISPVPKLVSPVESPLYQSVTWKEYLR 339          
The following BLAST results are available for this feature:
BLAST of CX287487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
GAOX1_ARATH3.340e-2136.05Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana G... [more]
FLS_MATIN7.441e-2132.12Flavonol synthase/flavanone 3-hydroxylase (Fragmen... [more]
FNSI_PETCR9.719e-2137.78Flavone synthase OS=Petroselinum crispum GN=FNSI P... [more]
ACCO_PEA9.719e-2130.951-aminocyclopropane-1-carboxylate oxidase OS=Pisum... [more]
FL3H_PETCR2.165e-2032.18Flavanone 3-dioxygenase OS=Petroselinum crispum GN... [more]
ACCH2_ARATH2.828e-2031.791-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
FL3H_MALDO3.693e-2033.72Naringenin,2-oxoglutarate 3-dioxygenase OS=Malus d... [more]
FL3H_ARATH4.823e-2033.33Naringenin,2-oxoglutarate 3-dioxygenase OS=Arabido... [more]
ACCO1_SOLLC4.823e-2032.031-aminocyclopropane-1-carboxylate oxidase 1 OS=Sol... [more]
G3OX1_ARATH6.300e-2030.06Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionC01010B01SK Veg1 Citrus clementina cDNA clone C01010B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287487 ID=CX287487; Name=CX287487; organism=Citrus clementina; type=EST; length=557bp
GGAAGTTTACTTATCAGAACTGAAAAATCTTGCCCTGAAAATCCTTGATC
AAATGGCTAAAGCTCTAAGAATGGATCCTAATGATATGAAAGAGTTGTTT
GGAAACGGGGTACAATAATTAAGGATGAATTATTATCCTCCTTGTCCGCA
ACCAGAGCAAGTTATCGGCATTAATTCCCATTGTGATGCCTCCGCACTTA
CCATCCTCCTCCCAATCAATCAGATGGATGGTCTCCAAATAAAGAAAGAT
GGAAAATTGGTTGCTGTTAGACCCCTTCCAGATGCCTTTATAGTCAACAT
TGGAGACATTTTAGAGGTTTTTACCAATGGAATTTACCGTAGTATGGAAC
ATCGTGCAACTGTGAACTCAATGAAGAAAAAATTATCTTTTGCTACATTT
TATGGTGCAAAATTAGATGGAGAATTGGGTCCAGCACCAAGTCTTATTAC
TCGAGAGACACCAACATTATTTAAGAGGATAAGTGTGGTAGATCACTTTA
AAAGATTTTTTTCAAGAGCTACGTGGAAAATCATTTTTTGATTTCTTGAG
AATTCAA
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