CX287487

Overview
NameCX287487
Unique NameCX287487
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length557
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: FL3H_PETHY (Naringenin,2-oxoglutarate 3-dioxygenase (Fragment) OS=Petunia hybrida GN=AN3 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.097e-19
Identity = 53/149 (35.57%), Postives = 87/149 (58.39%), Query Frame = 2
Query:    8 YLSELKNLALKILDQMAKALRMDPNDMKELFGNGVQ*LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKD-GKL-VAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLI 448
            Y  +L  LA K+LD +++A+ ++   + +   +  Q + +N+YP CP+P+  +G+  H D   +T+LL  +Q+ GLQ  KD GK  + V+P+  AF+VN+GD     +NG +++ +H+A VNS   +LS ATF          PAP  I
Sbjct:  163 YSEKLMELACKLLDVLSEAMGLEKEALTKACVDMDQKVVVNFYPKCPEPDLTLGLKRHTDPGTITLLLQ-DQVGGLQATKDNGKTWITVQPVEGAFVVNLGDHGHFLSNGRFKNADHQAVVNSNSSRLSIATFQ--------NPAPEAI 302          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: LDOX_MAIZE (Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.026e-18
Identity = 50/130 (38.46%), Postives = 70/130 (53.85%), Query Frame = 2
Query:  119 LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGE-LGPAPSLITRETPTLFKRISVVDHFKR 505
            L++NYYP CPQPE  +G+ +H D SAL+ +L  N + GLQ+    + V  R  P   IV++GD LE+ +NG Y S+ HR  VN    ++S+  F     D   L P P L+T   P  F   +   H  R
Sbjct:  234 LKINYYPRCPQPELAVGVEAHTDVSALSFILH-NGVPGLQVLHGARWVTARHEPGTIIVHVGDALEILSNGRYTSVLHRGLVNREAVRISWVVFCEPPPDSVLLHPLPELVTEGHPARFTPRTFKQHLDR 362          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: G2OX2_ARATH (Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA2OX2 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.647e-18
Identity = 52/168 (30.95%), Postives = 89/168 (52.98%), Query Frame = 2
Query:    2 EVYLSELKNLALKILDQMAKALRMDPNDMKELF---GNGVQ*LRMNYYPPCPQPEQV---IGINSHCDASALTILLPINQMDGLQI-KKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLITRETPTLFKRIS 484
            E Y+ E+K ++ K+L+ +A+ L ++P D              LR+N+YP   +  +    +G   H D   +++L   N   GLQI  KDG  VAV P   +F +N+GD L+V TNG ++S++HR   ++ + ++S   F G  L  ++ P P L+  +   L+K  +
Sbjct:  142 EEYMKEIKEVSYKVLEMVAEELGIEPRDTLSKMLRDEKSDSCLRLNHYPAAEEEAEKMVKVGFGEHTDPQIISVLRS-NNTAGLQICVKDGSWVAVPPDHSSFFINVGDALQVMTNGRFKSVKHRVLADTRRSRISMIYFGGPPLSQKIAPLPCLVPEQDDWLYKEFT 308          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: G3OX4_ARATH (Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis thaliana GN=At1g80330 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.896e-18
Identity = 54/170 (31.76%), Postives = 93/170 (54.71%), Query Frame = 2
Query:    8 YLSELKNLALKILDQMAKALRMDPNDMK---------ELFGNGVQ*LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQI-KKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKL-DGELGPAPSLITRETPTLFKRIS 484
            Y+ E++ LA ++L  +  +L +   D++            G G   +R+N+YP CP+PE+ +G+ +H D++ LTIL   N   GLQ+ +++   V V P P   +VNIGD+  + +NG   S+ HRA VN  + ++S A  +G    D ++ P   L     P+L++ I+
Sbjct:  163 YVDEMEKLASRLLYCILGSLGVTVEDIEWAHKLEKSGSKVGRGA--IRLNHYPVCPEPERAMGLAAHTDSTILTILHQSN-TGGLQVFREESGWVTVEPAPGVLVVNIGDLFHILSNGKIPSVVHRAKVNHTRSRISIAYLWGGPAGDVQIAPISKLTGPAEPSLYRSIT 329          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: FL3H_HORVU (Naringenin,2-oxoglutarate 3-dioxygenase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.701e-18
Identity = 51/174 (29.31%), Postives = 94/174 (54.02%), Query Frame = 2
Query:    2 EVYLSELKNLALKILDQMAKALRMDPNDMKELFGNGVQ*LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDG--KLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLITRETPTLFKRISVVDHFKRFFSR 517
            E Y   L  L+  ++  +++A+ ++   + +   +  Q + +N+YP CPQP+  +G+  H D   +T+LL  + + GLQ  +DG    + V+P+  AF+VN+GD     +NG +++ +H+A VN    +LS ATF     D  + P  ++   E P L + I+  + ++R   R
Sbjct:  161 ERYSERLMGLSCNLMGVLSEAMGLETEALAKACVDMDQKVVVNFYPRCPQPDLTLGLKRHTDPGTITLLLQ-DLVGGLQATRDGGKNWITVQPISGAFVVNLGDHGHFMSNGRFKNADHQAVVNGESSRLSIATFQNPAPDARVWPL-AVREGEEPILEEPITFTEMYRRKMER 332          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: G2OX1_ARATH (Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA2OX1 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 2.241e-17
Identity = 54/172 (31.40%), Postives = 85/172 (49.42%), Query Frame = 2
Query:    2 EVYLSELKNLALKILDQMAKALRMDP-NDMKELFG--NGVQ*LRMNYYPPCPQPEQ-------VIGINSHCDASALTILLPINQMDGLQIK-KDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLITRETPTLFKRIS 484
            E Y + ++ +   +L+++   L + P N + +L    N    LR+N+YPPCP   +       VIG   H D   +++L   N   GLQI   DG  ++V P   +F  N+GD L+V TNG ++S+ HR   N  K ++S   F G  L   + P   LI  E   L++  +
Sbjct:  128 EEYTTSVRKMTFDVLEKITDGLGIKPRNTLSKLVSDQNTDSILRLNHYPPCPLSNKKTNGGKNVIGFGEHTDPQIISVLRS-NNTSGLQINLNDGSWISVPPDHTSFFFNVGDSLQVMTNGRFKSVRHRVLANCKKSRVSMIYFAGPSLTQRIAPLTCLIDNEDERLYEEFT 298          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: GSL_ARATH (Probable 2-oxoacid dependent dioxygenase OS=Arabidopsis thaliana GN=GSL-OH PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.477e-16
Identity = 49/133 (36.84%), Postives = 76/133 (57.14%), Query Frame = 2
Query:    8 YLSELKNLALKILDQMAKALRMDPNDMKELFGNGVQ*LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKK-KLSFATFY 403
            Y  E+  LA  + + +++AL + PN +KE+       +  + +PPCP+P +  G   H D S LTILL  N   GLQ+  DG  + V P P+A I N+GD L++ +N  + SMEHR   N  ++ ++S A F+
Sbjct:  174 YSKEVMKLAELMFEILSEALGLSPNHLKEMDCAKGLWMLCHCFPPCPEPNRTFGGAQHTDRSFLTILLNDNN-GGLQVLYDGYWIDVPPNPEALIFNVGDFLQLISNDKFVSMEHRILANGGEEPRISVACFF 305          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: G2OX3_ARATH (Gibberellin 2-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=GA2OX3 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.477e-16
Identity = 51/167 (30.54%), Postives = 87/167 (52.10%), Query Frame = 2
Query:    2 EVYLSELKNLALKILDQMAKALRMDPNDMKELF---GNGVQ*LRMNYYPPCPQP--EQVIGINSHCDASALTILLPINQMDGLQI-KKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLITRETPTLFKRIS 484
            E Y+ E+K ++ K L+ + + L+++P +              LRMN+YP   +   ++ IG   H D   ++ LL  N  +GLQI  KDG  V V P   +F V +GD L+V TNG ++S++HR   N+ + ++S   F G  L  ++ P   L+ ++   L+   +
Sbjct:  138 EEYIKEMKRMSSKFLEMVEEELKIEPKEKLSRLVKVKESDSCLRMNHYPEKEETPVKEEIGFGEHTDPQLIS-LLRSNDTEGLQICVKDGTWVDVTPDHSSFFVLVGDTLQVMTNGRFKSVKHRVVTNTKRSRISMIYFAGPPLSEKIAPLSCLVPKQDDCLYNEFT 303          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: G2OX7_ARATH (Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.969e-15
Identity = 44/142 (30.99%), Postives = 79/142 (55.63%), Query Frame = 2
Query:    2 EVYLSELKNLALKILDQMAKALRMDPNDMKELFGNGVQ*LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGEL 427
            E Y+ E+  +A  I + + K + +     + +F      LR+N Y P     +V G+  H D S LTIL   +Q+ GL+++ +G+ ++V+P  +A  VNIGD+ +  +NG+Y+S+ HR    +  +++S A F    L+ E+
Sbjct:  157 ETYVQEIARVAQMICEILGKQVNVSSEYFENIFELENSFLRLNKYHPSVFGSEVFGLVPHTDTSFLTILSQ-DQIGGLELENNGQWISVKPCLEALTVNIGDMFQALSNGVYQSVRHRVISPANIERMSIAFFVCPYLETEI 297          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: G3O23_WHEAT (Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aestivum GN=GA3ox2-3 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.319e-14
Identity = 46/169 (27.22%), Postives = 88/169 (52.07%), Query Frame = 2
Query:    2 EVYLSELKNLALKILDQMAKALRMDPNDM------KELFGNGVQ*LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDG--KLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLITRETPTLFKRIS 484
            E +  E++ LA K+L+    AL +    +      +++       + +N+YP CP P++ +G+ +H D+   T +L  + + GLQ+ + G  + V V  +P A +VN+GD+ ++ TNG + S+ HRA VN    ++S   F G     ++ P    +   TP  ++ ++
Sbjct:  164 EEFHREMRALADKLLELFLVALGLTGEQVAAVESEQKIAETMTATMHLNWYPKCPDPKRALGLIAHTDSGFFTFVLQ-SLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRESDRISLGYFLGPPAHVKVAPLREALA-GTPAAYRAVT 330          
The following BLAST results are available for this feature:
BLAST of CX287487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
FL3H_PETHY9.097e-1935.57Naringenin,2-oxoglutarate 3-dioxygenase (Fragment)... [more]
LDOX_MAIZE2.026e-1838.46Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 P... [more]
G2OX2_ARATH2.647e-1830.95Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis th... [more]
G3OX4_ARATH5.896e-1831.76Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis th... [more]
FL3H_HORVU7.701e-1829.31Naringenin,2-oxoglutarate 3-dioxygenase OS=Hordeum... [more]
G2OX1_ARATH2.241e-1731.40Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis th... [more]
GSL_ARATH2.477e-1636.84Probable 2-oxoacid dependent dioxygenase OS=Arabid... [more]
G2OX3_ARATH2.477e-1630.54Gibberellin 2-beta-dioxygenase 3 OS=Arabidopsis th... [more]
G2OX7_ARATH7.969e-1530.99Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis th... [more]
G3O23_WHEAT2.319e-1427.22Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aes... [more]

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Properties
Property NameValue
Genbank descriptionC01010B01SK Veg1 Citrus clementina cDNA clone C01010B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287487 ID=CX287487; Name=CX287487; organism=Citrus clementina; type=EST; length=557bp
GGAAGTTTACTTATCAGAACTGAAAAATCTTGCCCTGAAAATCCTTGATC
AAATGGCTAAAGCTCTAAGAATGGATCCTAATGATATGAAAGAGTTGTTT
GGAAACGGGGTACAATAATTAAGGATGAATTATTATCCTCCTTGTCCGCA
ACCAGAGCAAGTTATCGGCATTAATTCCCATTGTGATGCCTCCGCACTTA
CCATCCTCCTCCCAATCAATCAGATGGATGGTCTCCAAATAAAGAAAGAT
GGAAAATTGGTTGCTGTTAGACCCCTTCCAGATGCCTTTATAGTCAACAT
TGGAGACATTTTAGAGGTTTTTACCAATGGAATTTACCGTAGTATGGAAC
ATCGTGCAACTGTGAACTCAATGAAGAAAAAATTATCTTTTGCTACATTT
TATGGTGCAAAATTAGATGGAGAATTGGGTCCAGCACCAAGTCTTATTAC
TCGAGAGACACCAACATTATTTAAGAGGATAAGTGTGGTAGATCACTTTA
AAAGATTTTTTTCAAGAGCTACGTGGAAAATCATTTTTTGATTTCTTGAG
AATTCAA
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