CX287487

Overview
NameCX287487
Unique NameCX287487
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length557
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: G3O22_WHEAT (Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aestivum GN=GA3ox2-2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.028e-14
Identity = 46/169 (27.22%), Postives = 88/169 (52.07%), Query Frame = 2
Query:    2 EVYLSELKNLALKILDQMAKALRMDPNDM------KELFGNGVQ*LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDG--KLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLITRETPTLFKRIS 484
            E +  E++ LA K+L+    AL +    +      +++       + +N+YP CP P++ +G+ +H D+   T +L  + + GLQ+ + G  + V V  +P A +VN+GD+ ++ TNG + S+ HRA VN    ++S   F G     ++ P    +   TP  ++ ++
Sbjct:  164 EEFHREMRALADKLLELFLVALGLTGEQVAAVESEQKIAETMTATMHLNWYPKCPDPKRALGLIAHTDSGFFTFVLQ-SLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRDSDRISLGYFLGPPAHVKVAPLREALA-GTPAAYRAVT 330          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: G3OX3_ARATH (Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=At4g21690 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.955e-14
Identity = 50/172 (29.07%), Postives = 90/172 (52.33%), Query Frame = 2
Query:    2 EVYLSELKNLALKILDQMAKALRMDPNDMKELF----GNGVQ*----LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIK----KDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLITRETPTLFKRI 481
            E Y   + +L+ +++  +  +L +   D+  L     G+G       L++N YP CP P   +G+  H D+S LTIL   N + GL+I+    +  + + V P+  + +V +GD+  + +NG +RS  HRA VN    ++S A F G   + ++GP  S   +  P +++R+
Sbjct:  159 EEYQKAMDDLSHRLISMLMGSLGLTHEDLGWLVPDKTGSGTDSIQSFLQLNSYPVCPDPHLAMGLAPHTDSSLLTILYQGN-IPGLEIESPQEEGSRWIGVEPIEGSLVVIMGDLSHIISNGQFRSTMHRAVVNKTHHRVSAAYFAGPPKNLQIGPLTS--DKNHPPIYRRL 327          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: G3O21_WHEAT (Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aestivum GN=GA3ox2-1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.165e-14
Identity = 38/124 (30.65%), Postives = 70/124 (56.45%), Query Frame = 2
Query:  119 LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDG--KLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLITRETPTLFKRIS 484
            + +N+YP CP P++ +G+ +H D+   T +L  + + GLQ+ + G  + V V  +P A +VN+GD+ ++ TNG + S+ HRA VN    ++S   F G     ++ P    +   TP  ++ ++
Sbjct:  209 MHLNWYPKCPDPKRALGLIAHTDSGFFTFVLQ-SLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRDSDRISLGYFLGPPAHVKVAPLREALA-GTPAAYRAVT 330          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: G2OX2_PEA (Gibberellin 2-beta-dioxygenase 2 OS=Pisum sativum GN=GA2OX2 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.963e-13
Identity = 53/174 (30.46%), Postives = 86/174 (49.43%), Query Frame = 2
Query:    8 YLSELKNLALKILDQMAKALRM-DPNDMKELFGN--GVQ*LRMNYYPPCPQ-------PEQV-------IGINSHCDASALTILLPINQMDGLQIKKD-GKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLITRETPTLFK 475
            Y+  +K+L  +IL+  A+ L + D + + ++  +      LR+N+YPP  +       P ++       IG   H D   LTIL   N + GLQI    G  + V P P  F V +GD L+V TNG + S+ HR   N+ K ++S   F    L+  + P   ++T  +P L++
Sbjct:  135 YIKAVKDLTCEILELAAEGLWVPDKSSLSKIIKDEHSDSLLRINHYPPVKKLGNDNWDPSKIQNSNNNNIGFGEHSDPQILTILRS-NNVGGLQISTHHGLWIPVPPDPSEFYVMVGDALQVLTNGRFVSVRHRVLTNTTKPRMSMMYFAAPPLNWLISPLSKMVTAHSPCLYR 307          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: ISP7_SCHPO (Sexual differentiation process protein isp7 OS=Schizosaccharomyces pombe GN=isp7 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.662e-12
Identity = 47/174 (27.01%), Postives = 80/174 (45.98%), Query Frame = 2
Query:    8 YLSELKNLALKILDQMAKALRMDPNDMKELFGNGVQ*LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKK--DGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLITRETPTLFKRISVVDHFKRFFSRAT 523
            Y  ++   A  ++  +A++L + P+   E   +    +R+  YP  P     +G+  H DA ALT++   N + GL+I        ++V P P A I N+GDI+ + TN  Y+S  HR   NS   + +   F    +D  + P P L       +     + DHF+  ++  T
Sbjct:  222 YHDQMLAFANHVMSLLAESLELSPDAFDEFCSDPTTSIRLLRYPSSPNR---LGVQEHTDADALTLMSQDN-VKGLEILDPVSNCFLSVSPAPGALIANLGDIMAILTNNRYKSSMHRVCNNSGSDRYTIPFFLQGNIDYVVAPLPGLGPSTAEPIAVEDLLRDHFQNSYTSHT 391          
The following BLAST results are available for this feature:
BLAST of CX287487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
G3O22_WHEAT3.028e-1427.22Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aes... [more]
G3OX3_ARATH3.955e-1429.07Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis th... [more]
G3O21_WHEAT5.165e-1430.65Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aes... [more]
G2OX2_PEA1.963e-1330.46Gibberellin 2-beta-dioxygenase 2 OS=Pisum sativum ... [more]
ISP7_SCHPO1.662e-1227.01Sexual differentiation process protein isp7 OS=Sch... [more]

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Properties
Property NameValue
Genbank descriptionC01010B01SK Veg1 Citrus clementina cDNA clone C01010B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287487 ID=CX287487; Name=CX287487; organism=Citrus clementina; type=EST; length=557bp
GGAAGTTTACTTATCAGAACTGAAAAATCTTGCCCTGAAAATCCTTGATC
AAATGGCTAAAGCTCTAAGAATGGATCCTAATGATATGAAAGAGTTGTTT
GGAAACGGGGTACAATAATTAAGGATGAATTATTATCCTCCTTGTCCGCA
ACCAGAGCAAGTTATCGGCATTAATTCCCATTGTGATGCCTCCGCACTTA
CCATCCTCCTCCCAATCAATCAGATGGATGGTCTCCAAATAAAGAAAGAT
GGAAAATTGGTTGCTGTTAGACCCCTTCCAGATGCCTTTATAGTCAACAT
TGGAGACATTTTAGAGGTTTTTACCAATGGAATTTACCGTAGTATGGAAC
ATCGTGCAACTGTGAACTCAATGAAGAAAAAATTATCTTTTGCTACATTT
TATGGTGCAAAATTAGATGGAGAATTGGGTCCAGCACCAAGTCTTATTAC
TCGAGAGACACCAACATTATTTAAGAGGATAAGTGTGGTAGATCACTTTA
AAAGATTTTTTTCAAGAGCTACGTGGAAAATCATTTTTTGATTTCTTGAG
AATTCAA
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