CX287498

Overview
NameCX287498
Unique NameCX287498
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length494
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287498 vs. ExPASy Swiss-Prot
Match: CALM3_SOLTU (Putative calmodulin-3 (Fragment) OS=Solanum tuberosum GN=PCM3 PE=5 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 7.799e-31
Identity = 66/73 (90.41%), Postives = 70/73 (95.89%), Query Frame = 1
Query:    1 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 219
            +KDTD EEELKEAFRVFDKD+NGFISAAEL HVMTNLGEKLTDEEVDE+IREADVD DGQINY+EFVKVMMAK
Sbjct:   52 IKDTDFEEELKEAFRVFDKDRNGFISAAELPHVMTNLGEKLTDEEVDEIIREADVDCDGQINYDEFVKVMMAK 124          
BLAST of CX287498 vs. ExPASy Swiss-Prot
Match: CML1_ORYSI (Calmodulin-like protein 1 OS=Oryza sativa subsp. indica GN=CML1 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.737e-30
Identity = 64/73 (87.67%), Postives = 68/73 (93.15%), Query Frame = 1
Query:    1 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 219
            ++D DSEEELKEAFRVFDKDQNGFISAAELRHVM N+GE+LTDEEV EMI EADVDGDGQINYEEFVK MMAK
Sbjct:   77 LRDKDSEEELKEAFRVFDKDQNGFISAAELRHVMANIGERLTDEEVGEMISEADVDGDGQINYEEFVKCMMAK 149          
BLAST of CX287498 vs. ExPASy Swiss-Prot
Match: CALM_SUBDO (Calmodulin OS=Suberites domuncula PE=2 SV=3)

HSP 1 Score: 131.724 bits (330), Expect = 1.737e-30
Identity = 63/73 (86.30%), Postives = 69/73 (94.52%), Query Frame = 1
Query:    1 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 219
            MK+TDSEEE++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD DGDGQ+NYEEFV +M +K
Sbjct:   77 MKETDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADTDGDGQVNYEEFVGMMTSK 149          
BLAST of CX287498 vs. ExPASy Swiss-Prot
Match: CALM_STYLE (Calmodulin OS=Stylonychia lemnae PE=3 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 1.737e-30
Identity = 64/73 (87.67%), Postives = 69/73 (94.52%), Query Frame = 1
Query:    1 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 219
            MKDTD+EEEL EAF+VFD+D NG ISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDG INYEEFV++MMAK
Sbjct:   77 MKDTDTEEELVEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGHINYEEFVRMMMAK 149          

HSP 2 Score: 66.6254 bits (161), Expect = 6.864e-11
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = 1
Query:    1 MKDTDSEE---ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 219
            M D  +EE   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    1 MADNLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARK 76          
BLAST of CX287498 vs. ExPASy Swiss-Prot
Match: CALM_BLAEM (Calmodulin OS=Blastocladiella emersonii GN=CMD1 PE=3 SV=3)

HSP 1 Score: 131.724 bits (330), Expect = 1.737e-30
Identity = 62/73 (84.93%), Postives = 72/73 (98.63%), Query Frame = 1
Query:    1 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 219
            MKD+DSEEE+KEAF+VFDKD NG+ISAAELRHVMTNLGEKL+++EV+EMIREADVDGDGQINYEEFVK+MM+K
Sbjct:   77 MKDSDSEEEIKEAFKVFDKDGNGYISAAELRHVMTNLGEKLSEDEVEEMIREADVDGDGQINYEEFVKMMMSK 149          
BLAST of CX287498 vs. ExPASy Swiss-Prot
Match: CALM_PHYPO (Calmodulin OS=Physarum polycephalum PE=2 SV=3)

HSP 1 Score: 131.339 bits (329), Expect = 2.269e-30
Identity = 61/73 (83.56%), Postives = 71/73 (97.26%), Query Frame = 1
Query:    1 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 219
            M DTD+EEE++EAF+VFDKD NGFISAAELRHVMTNLGEKL+DEEVDEMIREADVDGDGQ+NY+EFVK+M++K
Sbjct:   77 MADTDTEEEIREAFKVFDKDGNGFISAAELRHVMTNLGEKLSDEEVDEMIREADVDGDGQVNYDEFVKMMLSK 149          
BLAST of CX287498 vs. ExPASy Swiss-Prot
Match: CALM_TETPY (Calmodulin OS=Tetrahymena pyriformis PE=1 SV=4)

HSP 1 Score: 130.954 bits (328), Expect = 2.964e-30
Identity = 63/73 (86.30%), Postives = 69/73 (94.52%), Query Frame = 1
Query:    1 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 219
            MKDTD+EEEL EAF+VFD+D NG ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDG INYEEFV++MMAK
Sbjct:   77 MKDTDTEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGHINYEEFVRMMMAK 149          

HSP 2 Score: 66.2402 bits (160), Expect = 8.965e-11
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = 1
Query:    1 MKDTDSEE---ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 219
            M D  +EE   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARK 76          
BLAST of CX287498 vs. ExPASy Swiss-Prot
Match: CALM_OREMO (Calmodulin OS=Oreochromis mossambicus GN=calm PE=2 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 2.964e-30
Identity = 62/73 (84.93%), Postives = 70/73 (95.89%), Query Frame = 1
Query:    1 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 219
            MKDTDSEEE++EAFRVFDKD NG+ISAAELR+VMTNLGEKLTDE VDEMIREAD+DGDGQ+NYEEFV++M AK
Sbjct:   77 MKDTDSEEEIREAFRVFDKDGNGYISAAELRYVMTNLGEKLTDEXVDEMIREADIDGDGQVNYEEFVQMMTAK 149          
BLAST of CX287498 vs. ExPASy Swiss-Prot
Match: CML1_ORYSJ (Calmodulin-like protein 1 OS=Oryza sativa subsp. japonica GN=CML1 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 5.055e-30
Identity = 63/73 (86.30%), Postives = 67/73 (91.78%), Query Frame = 1
Query:    1 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 219
            ++D DSEEELKEAFRVFDKDQNGFISA ELRHVM N+GE+LTDEEV EMI EADVDGDGQINYEEFVK MMAK
Sbjct:   77 LRDKDSEEELKEAFRVFDKDQNGFISATELRHVMANIGERLTDEEVGEMISEADVDGDGQINYEEFVKCMMAK 149          
BLAST of CX287498 vs. ExPASy Swiss-Prot
Match: CALM_ORYLA (Calmodulin-A (Fragment) OS=Oryzias latipes GN=calm1 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 6.602e-30
Identity = 61/67 (91.04%), Postives = 66/67 (98.51%), Query Frame = 1
Query:    1 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFV 201
            MKDTDSEEE++EAFRVFDKD NG+ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV
Sbjct:   70 MKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 136          
The following BLAST results are available for this feature:
BLAST of CX287498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 279
Match NameE-valueIdentityDescription
CALM3_SOLTU7.799e-3190.41Putative calmodulin-3 (Fragment) OS=Solanum tubero... [more]
CML1_ORYSI1.737e-3087.67Calmodulin-like protein 1 OS=Oryza sativa subsp. i... [more]
CALM_SUBDO1.737e-3086.30Calmodulin OS=Suberites domuncula PE=2 SV=3[more]
CALM_STYLE1.737e-3087.67Calmodulin OS=Stylonychia lemnae PE=3 SV=2[more]
CALM_BLAEM1.737e-3084.93Calmodulin OS=Blastocladiella emersonii GN=CMD1 PE... [more]
CALM_PHYPO2.269e-3083.56Calmodulin OS=Physarum polycephalum PE=2 SV=3[more]
CALM_TETPY2.964e-3086.30Calmodulin OS=Tetrahymena pyriformis PE=1 SV=4[more]
CALM_OREMO2.964e-3084.93Calmodulin OS=Oreochromis mossambicus GN=calm PE=2... [more]
CML1_ORYSJ5.055e-3086.30Calmodulin-like protein 1 OS=Oryza sativa subsp. j... [more]
CALM_ORYLA6.602e-3091.04Calmodulin-A (Fragment) OS=Oryzias latipes GN=calm... [more]

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Properties
Property NameValue
Genbank descriptionC01010B12SK Veg1 Citrus clementina cDNA clone C01010B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287498 ID=CX287498; Name=CX287498; organism=Citrus clementina; type=EST; length=494bp
ATGAAGGATACCGACTCTGAGGAGGAGCTGAAAGAGGCCTTCCGGGTTTT
CGACAAGGATCAGAATGGTTTCATCTCAGCTGCTGAACTGCGTCATGTGA
TGACAAACCTTGGGGAGAAGCTTACTGATGAGGAAGTCGATGAGATGATA
AGGGAAGCTGATGTCGATGGTGATGGCCAGATAAATTATGAGGAATTTGT
CAAGGTTATGATGGCTAAGTAAGTGACTCCACCCAACCAAAACTTCCTGG
AAAAAGAAGAAATTGGTTGATTAATATAATTGGTTCCCTAGTTTCCTTTT
TTATAAATTTTAATTTGATAACTCTGAGGTCAAGCTAAAGGAAGCATGTT
GTCTCCTGCTTCAATTTGTCTTGTGACTGGAGCAACTTTTCAGTTTTTTA
ATGTTTTAGTTTTTTTCCGCTCTTCTGTGAACATTGTTTCTGTTAAATGA
GTGACTCGTTGATCTGCCTTATTTCTTAAAAAAAAAAAAAAAAA
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