CX287508

Overview
NameCX287508
Unique NameCX287508
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length651
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287508 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.103e-14
Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = 2
Query:  218 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 442
            Y GGS DP              +D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  191 YPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255          
BLAST of CX287508 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.103e-14
Identity = 52/141 (36.88%), Postives = 72/141 (51.06%), Query Frame = 2
Query:   47 WFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 442
            WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP               D +++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  121 WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAG----GPLGE---VTDPIYPGGSFDPL----------GLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 244          
BLAST of CX287508 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 7.103e-14
Identity = 51/141 (36.17%), Postives = 72/141 (51.06%), Query Frame = 2
Query:   47 WFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 442
            WF+ G  I   G  +Y  +P          ++ +++ LMG  E  R       G +G    +    Y GG+ DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  130 WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG----GPLGE---VVDPLYPGGAFDPL----------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253          
BLAST of CX287508 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 7.103e-14
Identity = 57/157 (36.31%), Postives = 77/157 (49.04%), Query Frame = 2
Query:    2 ILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 442
            IL K G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMGF E  R       G +G     G +  Y GG+ DP               D  +  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct:  117 ILSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR----VGGGPLGE----GLDPIYPGGAFDPL----------GLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANN 253          
BLAST of CX287508 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.277e-14
Identity = 38/75 (50.67%), Postives = 47/75 (62.67%), Query Frame = 2
Query:  218 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 442
            YLGGS DP               D +   + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL DPVNNN
Sbjct:  188 YLGGSFDPL----------GLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNN 252          
BLAST of CX287508 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.277e-14
Identity = 52/141 (36.88%), Postives = 70/141 (49.65%), Query Frame = 2
Query:   47 WFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 442
            WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G         Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  131 WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG----GPLGEVID---PLYPGGSFDPL----------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254          
BLAST of CX287508 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.277e-14
Identity = 52/141 (36.88%), Postives = 71/141 (50.35%), Query Frame = 2
Query:   47 WFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 442
            WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:   71 WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG----GPLGE---VTDPIYPGGSFDPL----------GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 194          
BLAST of CX287508 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.277e-14
Identity = 52/141 (36.88%), Postives = 71/141 (50.35%), Query Frame = 2
Query:   47 WFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 442
            WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  120 WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG----GPLGE---VTDPIYPGGSFDPL----------GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 243          
BLAST of CX287508 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.277e-14
Identity = 53/142 (37.32%), Postives = 71/142 (50.00%), Query Frame = 2
Query:   47 WFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 442
            WF+ G  I   G  +Y  +P          ++  ++ LMGF E  R       G +G     G +  Y GG+ DP               D  S  + K+KE+KNGRLAM ++ G+FVQ +VTG GP QNL DH+ADPV NN
Sbjct:  130 WFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYR----VGGGPLGE----GLDPLYPGGAFDPL----------GLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANN 253          
BLAST of CX287508 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.212e-13
Identity = 37/75 (49.33%), Postives = 49/75 (65.33%), Query Frame = 2
Query:  218 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 442
            Y GGS DP              +D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct:  191 YPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 255          
The following BLAST results are available for this feature:
BLAST of CX287508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB23_NICPL7.103e-1450.67Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB22_SOYBN7.103e-1436.88Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ORYSJ7.103e-1436.17Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_GOSHI7.103e-1436.31Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB48_MAIZE9.277e-1450.67Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB24_PETSP9.277e-1436.88Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB22_CUCSA9.277e-1436.88Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_CUCSA9.277e-1436.88Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB215_PEA9.277e-1437.32Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB2F_SOLLC1.212e-1349.33Chlorophyll a-b binding protein 3B, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC01010C11SK Veg1 Citrus clementina cDNA clone C01010C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287508 ID=CX287508; Name=CX287508; organism=Citrus clementina; type=EST; length=651bp
GATTCTTGGCAAGGCAGGCCTCATTCCGCAAGAAACTGCCCTGGCCTGGT
TCCAAACCGGTGTGATCCCCCCAGCGGGAACATACAACTACTGGGCAGAC
CCTTACACACTTTTCGTCCTGGAAATGGCACTCATGGGATTTGCCGAGCA
CCGGAGATTCCAAGACTGGGCAAATCCAGGATCAATGGGCAGGCAATACT
TCCTCGGATTCGAGAAATACTTGGGAGGATCCGGCGATCCGGCTTACCCT
GGAGGACCTCTATTCAACCCTCTGGGTCTTGGGAAAGATGAGAAGTCAAT
GAAGGATTTCAAGCTCAAGGAAGTGAAGAATGGAAGATTGGCAATGTTGG
CAATCTTGGGTTACTTTGTTCAAGGTCTTGTTACAGGAGTTGGGCCTTAC
CAGAACCTATTGGATCACTTGGCTGATCCTGTCAACAACAATGTTTTGAC
TAGCCTCAAGTTTCACTGAGAGAGAAATTTCTTGTTCATTGCTTGGAATT
ATATATTCCAAGCCTTGTCATCCCCCACTCTGTTCTATTCTACTTTCCCC
ATTGTAAAATTATCTATGTGAAAAGTGAATGTAACTTGGCGGAAATGACA
TGTTAATTGCTAAACTGGATCTCTTAGTTATTAAAAAAAAAAAAAAAAAA
A
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