CX287508

Overview
NameCX287508
Unique NameCX287508
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length651
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287508 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.013e-13
Identity = 36/75 (48.00%), Postives = 47/75 (62.67%), Query Frame = 2
Query:  218 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 442
            Y GGS DP              +D ++  + K+KE KNGRLAM ++ G+F+Q +VTG GP +NL DHL DPVNNN
Sbjct:  191 YPGGSFDPL----------GLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVNNN 255          
BLAST of CX287508 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.854e-13
Identity = 51/141 (36.17%), Postives = 70/141 (49.65%), Query Frame = 2
Query:   47 WFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 442
            WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLA PVNNN
Sbjct:  128 WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAG----GPLGE---VTDPIYPGGSFDPL----------GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVNNN 251          
BLAST of CX287508 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.750e-12
Identity = 49/141 (34.75%), Postives = 71/141 (50.35%), Query Frame = 2
Query:   47 WFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 442
            WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP              +  ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP ++L DH+ADPVNNN
Sbjct:  131 WFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAG----GPLGE---IVDPLYPGGSFDPL----------GLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNN 254          
BLAST of CX287508 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.285e-12
Identity = 50/142 (35.21%), Postives = 70/142 (49.30%), Query Frame = 2
Query:   47 WFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 442
            WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G     G +  Y G + DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct:   15 WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYR----VGGGPLGE----GLDPLYPGDAFDPL----------GLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANN 138          
BLAST of CX287508 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.984e-12
Identity = 52/146 (35.62%), Postives = 67/146 (45.89%), Query Frame = 2
Query:   47 WFQTGV-IPPAGTYNYWADPYTL--------FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 454
            WF+ G  I   G  +Y   P  +          +++ LMG  E  R     N G  G     G +  Y G S DP               D  +  + K+KE+KNGRLAM +  G+FVQ +VTG GP QNL DHLADP  NN   +
Sbjct:  121 WFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYR----VNGGPAGE----GLDPLYPGESFDPL----------GLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAA 248          
BLAST of CX287508 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.898e-12
Identity = 50/141 (35.46%), Postives = 70/141 (49.65%), Query Frame = 2
Query:   47 WFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 442
            WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP              +  ++  + K+KE+KNGRLAM ++ G+FV  +VTG GP +NL DHLADPVNNN
Sbjct:   93 WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG----GPLGE---VVDPLYPGGSFDPL----------GLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVNNN 216          
BLAST of CX287508 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.649e-12
Identity = 33/72 (45.83%), Postives = 44/72 (61.11%), Query Frame = 2
Query:  227 GSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 442
            G G+  Y             D  +  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct:  182 GEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 253          
BLAST of CX287508 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.649e-12
Identity = 50/141 (35.46%), Postives = 69/141 (48.94%), Query Frame = 2
Query:   47 WFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 442
            WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADP  NN
Sbjct:  130 WFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAG----GPLGE---VEDPIYPGGSFDPL----------GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAVNN 253          
BLAST of CX287508 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.649e-12
Identity = 33/72 (45.83%), Postives = 43/72 (59.72%), Query Frame = 2
Query:  227 GSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 442
            G G+  Y             D  +  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL DPV NN
Sbjct:  185 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANN 256          
BLAST of CX287508 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.134e-11
Identity = 44/119 (36.97%), Postives = 61/119 (51.26%), Query Frame = 2
Query:   92 WADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 445
            W +  T+  +E   + FAE +R  +  +P           +KY GG+ DP              KD    ++ KLKE+KNGRLAMLA +G+ V Q    G GP +NL  HLADP +NN+
Sbjct:  135 WGNLPTILAIEFLAIAFAEQQRTME-KDPEK---------KKYPGGAFDPL----------GFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 233          
The following BLAST results are available for this feature:
BLAST of CX287508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB22_PETSP6.013e-1348.00Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB23_SOYBN7.854e-1336.17Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB21_WHEAT1.750e-1234.75Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_PINSY2.285e-1235.21Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB2_CHLMO2.984e-1235.62Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_PEA3.898e-1235.46Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB23_SOLLC6.649e-1245.83Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_POLMU6.649e-1235.46Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB23_HORVU6.649e-1245.83Chlorophyll a-b binding protein of LHCII type III,... [more]
CB121_HORVU1.134e-1136.97Chlorophyll a-b binding protein 1B-21, chloroplast... [more]

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Properties
Property NameValue
Genbank descriptionC01010C11SK Veg1 Citrus clementina cDNA clone C01010C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287508 ID=CX287508; Name=CX287508; organism=Citrus clementina; type=EST; length=651bp
GATTCTTGGCAAGGCAGGCCTCATTCCGCAAGAAACTGCCCTGGCCTGGT
TCCAAACCGGTGTGATCCCCCCAGCGGGAACATACAACTACTGGGCAGAC
CCTTACACACTTTTCGTCCTGGAAATGGCACTCATGGGATTTGCCGAGCA
CCGGAGATTCCAAGACTGGGCAAATCCAGGATCAATGGGCAGGCAATACT
TCCTCGGATTCGAGAAATACTTGGGAGGATCCGGCGATCCGGCTTACCCT
GGAGGACCTCTATTCAACCCTCTGGGTCTTGGGAAAGATGAGAAGTCAAT
GAAGGATTTCAAGCTCAAGGAAGTGAAGAATGGAAGATTGGCAATGTTGG
CAATCTTGGGTTACTTTGTTCAAGGTCTTGTTACAGGAGTTGGGCCTTAC
CAGAACCTATTGGATCACTTGGCTGATCCTGTCAACAACAATGTTTTGAC
TAGCCTCAAGTTTCACTGAGAGAGAAATTTCTTGTTCATTGCTTGGAATT
ATATATTCCAAGCCTTGTCATCCCCCACTCTGTTCTATTCTACTTTCCCC
ATTGTAAAATTATCTATGTGAAAAGTGAATGTAACTTGGCGGAAATGACA
TGTTAATTGCTAAACTGGATCTCTTAGTTATTAAAAAAAAAAAAAAAAAA
A
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