CX287512

Overview
NameCX287512
Unique NameCX287512
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length433
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287512 vs. ExPASy Swiss-Prot
Match: ERP60_SCHMA (Probable protein disulfide-isomerase ER-60 OS=Schistosoma mansoni PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 8.301e-13
Identity = 27/68 (39.71%), Postives = 43/68 (63.24%), Query Frame = 3
Query:   81 SLQDMVFNSGKNVLLEFYAPWCGHCKQLAPILDEVAVSYQNDADVAIAKFDATANDIPGDTFEVHRLP 284
            +  ++V N  K+V++ F+A WCGHCK L P  +E A   +N+ ++ +A  DATAND+P   ++V   P
Sbjct:  367 NFDEIVNNEEKDVMVVFHAGWCGHCKNLMPKYEEAASKVKNEPNLVLAAMDATANDVP-SPYQVRGFP 433          

HSP 2 Score: 31.5722 bits (70), Expect = 8.301e-13
Identity = 14/38 (36.84%), Postives = 23/38 (60.53%), Query Frame = 1
Query:  259 TPLKSIGYPTVFFRSASGKTVP--YEGDRTTEDIVDFI 366
            +P +  G+PT++F     K+ P  YEG R T DI+ ++
Sbjct:  425 SPYQVRGFPTIYFVPKGKKSSPVSYEGGRDTNDIIKYL 462          
BLAST of CX287512 vs. ExPASy Swiss-Prot
Match: PDI1_CAEEL (Protein disulfide-isomerase 1 OS=Caenorhabditis elegans GN=pdi-1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.914e-12
Identity = 28/59 (47.46%), Postives = 42/59 (71.19%), Query Frame = 3
Query:   75 ADSLQDMVFNSGKNVLLEFYAPWCGHCKQLAPILDEVAVSYQNDADVAIAKFDATANDI 251
            A +  ++  +  K V ++FYAPWCGHCKQL P+ DE+A  Y+++ +V IAK DAT N++
Sbjct:  370 ASNFNEIALDETKTVFVKFYAPWCGHCKQLVPVWDELAEKYESNPNVVIAKLDATLNEL 428          

HSP 2 Score: 59.3066 bits (142), Expect = 8.709e-12
Identity = 29/62 (46.77%), Postives = 37/62 (59.68%), Query Frame = 3
Query:  102 NSGKNVLLEFYAPWCGHCKQLAPILDEVA-VSYQNDADVAIAKFDATANDIPGDTFEVHRLP 284
            N  + VL++FYAPWC HCK LAP  DE A +  +  +D+ +AK DAT N      FEV   P
Sbjct:   38 NGNEFVLVKFYAPWCVHCKSLAPKYDEAADLLKEEGSDIKLAKVDATENQALASKFEVRGYP 99          

HSP 3 Score: 30.8018 bits (68), Expect = 8.709e-12
Identity = 14/31 (45.16%), Postives = 19/31 (61.29%), Query Frame = 1
Query:  277 GYPTVFFRSASGKTVPYEGDRTTEDIVDFIE 369
            GYPT+ +   SGK   Y G R T  IVD+++
Sbjct:   97 GYPTILYFK-SGKPTKYTGGRATAQIVDWVK 126          
BLAST of CX287512 vs. ExPASy Swiss-Prot
Match: PDI_ALTAL (Protein disulfide-isomerase (Fragment) OS=Alternaria alternata PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 4.265e-12
Identity = 36/79 (45.57%), Postives = 51/79 (64.56%), Query Frame = 3
Query:   75 ADSLQDMVFNSGKNVLLEFYAPWCGHCKQLAPILDEVAVSYQND---ADVAIAKFDATANDIPGDTFEVHRLPNRVLPI 302
            A + +D+V ++ K+VL+EFYAPWCGHCK LAP  +E+   Y +D     V IAK DAT ND+P +      LP+ + P+
Sbjct:  243 AHNYKDVVIDNDKDVLVEFYAPWCGHCKALAPKYEELGQLYASDELSKLVTIAKVDATLNDVPDEIQGF--LPSSLFPL 319          
BLAST of CX287512 vs. ExPASy Swiss-Prot
Match: PDIA6_ARATH (Probable protein disulfide-isomerase A6 OS=Arabidopsis thaliana GN=At2g47470 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.265e-12
Identity = 30/69 (43.48%), Postives = 44/69 (63.77%), Query Frame = 3
Query:   78 DSLQDMVFNSGKNVLLEFYAPWCGHCKQLAPILDEVAVSYQNDADVAIAKFDATANDIPGDTFEVHRLP 284
            D+  ++V +  K+VL+EFYAPWCGHCK LAP  ++VA  ++ +  V IA  DA A+   G+ + V   P
Sbjct:  149 DNFDEIVLDQNKDVLVEFYAPWCGHCKSLAPTYEKVATVFKQEEGVVIANLDADAHKALGEKYGVSGFP 217          
BLAST of CX287512 vs. ExPASy Swiss-Prot
Match: PDIA6_MEDSA (Probable protein disulfide-isomerase A6 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.764e-11
Identity = 29/69 (42.03%), Postives = 45/69 (65.22%), Query Frame = 3
Query:   78 DSLQDMVFNSGKNVLLEFYAPWCGHCKQLAPILDEVAVSYQNDADVAIAKFDATANDIPGDTFEVHRLP 284
            ++  ++V +  K+VL+EFYAPWCGHCK LAPI ++VA  ++++ DV IA  DA       + ++V   P
Sbjct:  155 ETFNEVVLDGTKDVLVEFYAPWCGHCKSLAPIYEKVAAVFKSEDDVVIANLDADKYRDLAEKYDVSGFP 223          
BLAST of CX287512 vs. ExPASy Swiss-Prot
Match: ERP38_NEUCR (Protein disulfide-isomerase erp38 OS=Neurospora crassa GN=erp38 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.610e-11
Identity = 33/69 (47.83%), Postives = 42/69 (60.87%), Query Frame = 3
Query:   81 SLQDMVFNSGKNVLLEFYAPWCGHCKQLAPILDEVAVSYQNDAD-VAIAKFDATANDIPGDTFEVHRLP 284
            +  D+V  SGK  L+EF+APWCGHCK LAP+ +E+A + +   D V IAK DA A    G  F V   P
Sbjct:   29 NFDDVVLKSGKPTLVEFFAPWCGHCKNLAPVYEELATALEYAKDKVQIAKVDADAERALGKRFGVQGFP 97          
The following BLAST results are available for this feature:
BLAST of CX287512 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
ERP60_SCHMA8.301e-1339.71Probable protein disulfide-isomerase ER-60 OS=Schi... [more]
PDI1_CAEEL1.914e-1247.46Protein disulfide-isomerase 1 OS=Caenorhabditis el... [more]
PDI_ALTAL4.265e-1245.57Protein disulfide-isomerase (Fragment) OS=Alternar... [more]
PDIA6_ARATH4.265e-1243.48Probable protein disulfide-isomerase A6 OS=Arabido... [more]
PDIA6_MEDSA2.764e-1142.03Probable protein disulfide-isomerase A6 OS=Medicag... [more]
ERP38_NEUCR3.610e-1147.83Protein disulfide-isomerase erp38 OS=Neurospora cr... [more]

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Properties
Property NameValue
Genbank descriptionC01010D03SK Veg1 Citrus clementina cDNA clone C01010D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287512 ID=CX287512; Name=CX287512; organism=Citrus clementina; type=EST; length=433bp
AAGGCAAGGTTCCCCCATTCAAAAAGTCTGAGCCTATCCCTGAAGAGAAC
AACGAGCCTGTGAAAGTGGTTGTTGCTGACAGCCTTCAGGACATGGTTTT
CAACTCTGGAAAAAATGTTTTGCTCGAGTTTTACGCTCCTTGGTGTGGAC
ACTGCAAACAGTTGGCTCCGATCTTGGATGAAGTTGCTGTCTCATATCAA
AATGATGCTGATGTTGCTATTGCAAAATTTGATGCAACCGCAAATGATAT
TCCTGGTGACACCTTTGAAGTCCATAGGTTACCCAACCGTGTTCTTCCGA
TCTGCTAGTGGAAAGACAGTGCCCTATGAGGGGGATAGGACCACAGAAGA
TATTGTTGACTTCATTGAAAATAACAGGGACACAAGCTGCCCCCAACGAA
ACTGTAAAAGAGGAATCTGGAAAAGATGAGCTC
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