CX287518

Overview
NameCX287518
Unique NameCX287518
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length567
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287518 vs. ExPASy Swiss-Prot
Match: RL37A_OSTOS (60S ribosomal protein L37a OS=Ostertagia ostertagi GN=rpl-37a PE=3 SV=3)

HSP 1 Score: 134.42 bits (337), Expect = 3.703e-31
Identity = 62/91 (68.13%), Postives = 71/91 (78.02%), Query Frame = 2
Query:   41 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 313
            M KRTKK GIVGKYGTRYGASLRK +KKME++QHS+Y C FCGK A++R AVGIW C  C K  AGGAY   T +A TVRST+RRLR+  E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKMVKKMEITQHSRYTCPFCGKDAMRRGAVGIWNCSKCKKTVAGGAYVYGTVAAATVRSTVRRLRDLKE 91          
BLAST of CX287518 vs. ExPASy Swiss-Prot
Match: RL43_YEAST (60S ribosomal protein L43 OS=Saccharomyces cerevisiae GN=RPL43A PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 6.316e-31
Identity = 61/92 (66.30%), Postives = 72/92 (78.26%), Query Frame = 2
Query:   41 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 316
            M KRTKK GI GKYG RYG+SLR+Q+KK+E+ QH++Y C FCGK  VKR A GIW C  C K  AGGAYT++TA+A TVRSTIRRLRE  E+
Sbjct:    1 MAKRTKKVGITGKYGVRYGSSLRRQVKKLEIQQHARYDCSFCGKKTVKRGAAGIWTCSCCKKTVAGGAYTVSTAAAATVRSTIRRLREMVEA 92          
BLAST of CX287518 vs. ExPASy Swiss-Prot
Match: RL43_CANGA (60S ribosomal protein L43 OS=Candida glabrata GN=RPL43 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 8.249e-31
Identity = 60/92 (65.22%), Postives = 72/92 (78.26%), Query Frame = 2
Query:   41 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 316
            M KRTKK GI GKYG RYG+SLR+Q+KK+EV QH++Y C FCGK  V+R A GIW C  C K  AGGAYT++TA+A TVRSTIRRLR+  E+
Sbjct:    1 MAKRTKKVGITGKYGVRYGSSLRRQVKKLEVQQHARYDCSFCGKKTVRRGAAGIWSCHSCKKTVAGGAYTVSTAAAATVRSTIRRLRDMVEA 92          
BLAST of CX287518 vs. ExPASy Swiss-Prot
Match: RL37A_SCHMA (60S ribosomal protein L37a (Fragment) OS=Schistosoma mansoni PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.407e-30
Identity = 62/90 (68.89%), Postives = 72/90 (80.00%), Query Frame = 2
Query:   47 KRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 316
            KRTKK GIVGKYG RYGASLRK IKK+E+SQH+KY C FCGK ++KRKA GIW CK C KV AGGAY  +T +A T+R+ IRRLR+  ES
Sbjct:    2 KRTKKVGIVGKYGVRYGASLRKTIKKIEISQHAKYNCNFCGKDSLKRKAAGIWECKACKKVVAGGAYVCSTTAATTIRAAIRRLRDAHES 91          
BLAST of CX287518 vs. ExPASy Swiss-Prot
Match: RL37A_DROME (60S ribosomal protein L37a OS=Drosophila melanogaster GN=RpL37A PE=1 SV=3)

HSP 1 Score: 131.724 bits (330), Expect = 2.400e-30
Identity = 60/91 (65.93%), Postives = 71/91 (78.02%), Query Frame = 2
Query:   41 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 313
            M KRTKK GIVGKYGTRYGASLRK +KKME++QHSKY C FCGK ++KR  VGIW CK C +  AGGA+  +T +A +VRS +RRLRE  E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKMVKKMEITQHSKYTCSFCGKDSMKRAVVGIWSCKRCKRTVAGGAWVYSTTAAASVRSAVRRLRETKE 91          
BLAST of CX287518 vs. ExPASy Swiss-Prot
Match: RL43B_SCHPO (60S ribosomal protein L43-B OS=Schizosaccharomyces pombe GN=rpl43b PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.008e-28
Identity = 59/93 (63.44%), Postives = 70/93 (75.27%), Query Frame = 2
Query:   41 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGC--KDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 313
            MTKRTKK G+ GKYG RYGASLR+ ++K+EV QHS+Y C FCG+  VKR A GIW C  K C K  AGGA+T+ TA+A + RSTIRRLRE  E
Sbjct:    1 MTKRTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRLTVKRTAAGIWKCSGKGCSKTLAGGAWTVTTAAATSARSTIRRLREMVE 93          
BLAST of CX287518 vs. ExPASy Swiss-Prot
Match: RL43A_SCHPO (60S ribosomal protein L43-A OS=Schizosaccharomyces pombe GN=rpl43a PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.008e-28
Identity = 60/93 (64.52%), Postives = 71/93 (76.34%), Query Frame = 2
Query:   41 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGC--KDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 313
            MTKRTKK G+ GKYG RYGASLR+ ++K+EV QHS+Y C FCG+  VKR A GIW C  K C KV AGGA+T+ TA+A + RSTIRRLRE  E
Sbjct:    1 MTKRTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRNTVKRTAAGIWCCNGKGCKKVLAGGAWTVTTAAATSARSTIRRLREMVE 93          
BLAST of CX287518 vs. ExPASy Swiss-Prot
Match: RL37A_MYXGL (60S ribosomal protein L37a (Fragment) OS=Myxine glutinosa GN=rpl37a PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.720e-28
Identity = 58/83 (69.88%), Postives = 68/83 (81.93%), Query Frame = 2
Query:   65 GIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 313
            GIVGKYGTRYGASLRK +KK+E++QHSKY C FCGK  +KR+AVGIW C  C K  AGGA+T NT+SAVTV+S IRRLRE  +
Sbjct:    2 GIVGKYGTRYGASLRKMVKKIEITQHSKYTCTFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTSSAVTVKSAIRRLREMKD 84          
BLAST of CX287518 vs. ExPASy Swiss-Prot
Match: RL37A_PLAF7 (60S ribosomal protein L37a OS=Plasmodium falciparum (isolate 3D7) GN=RPL37A PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.832e-28
Identity = 57/91 (62.64%), Postives = 70/91 (76.92%), Query Frame = 2
Query:   41 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 313
            M++RTKK G+ GKYGTRYG+SLRKQIKK+E+ QH+KY C FCGK A KR  VGIW CK C +   GGA++L T +AV  +STI RLR+Q E
Sbjct:    1 MSRRTKKVGLTGKYGTRYGSSLRKQIKKIELMQHAKYLCTFCGKTATKRTCVGIWKCKKCKRKVCGGAWSLTTPAAVAAKSTIIRLRKQKE 91          
BLAST of CX287518 vs. ExPASy Swiss-Prot
Match: RL37L_HUMAN (Putative 60S ribosomal protein L37a-like OS=Homo sapiens GN=RPL37L PE=5 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 2.660e-21
Identity = 52/89 (58.43%), Postives = 63/89 (70.79%), Query Frame = 2
Query:   41 MTKRTKKAG-IVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 304
            M K TKK G IV KY T +GASL K +K++E+SQH+KY C FCGK  +KR+AV I  C  C K  AG A+T NT SAV V+S IRRL+E
Sbjct:    1 MAKCTKKVGGIVSKYRTHHGASLWKMVKEIEISQHTKYTCSFCGKTKMKRRAVKIRHCNSCMKTVAGSAWTYNTTSAVMVKSAIRRLKE 89          
The following BLAST results are available for this feature:
BLAST of CX287518 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
RL37A_OSTOS3.703e-3168.1360S ribosomal protein L37a OS=Ostertagia ostertagi... [more]
RL43_YEAST6.316e-3166.3060S ribosomal protein L43 OS=Saccharomyces cerevis... [more]
RL43_CANGA8.249e-3165.2260S ribosomal protein L43 OS=Candida glabrata GN=R... [more]
RL37A_SCHMA1.407e-3068.8960S ribosomal protein L37a (Fragment) OS=Schistoso... [more]
RL37A_DROME2.400e-3065.9360S ribosomal protein L37a OS=Drosophila melanogas... [more]
RL43B_SCHPO1.008e-2863.4460S ribosomal protein L43-B OS=Schizosaccharomyces... [more]
RL43A_SCHPO1.008e-2864.5260S ribosomal protein L43-A OS=Schizosaccharomyces... [more]
RL37A_MYXGL1.720e-2869.8860S ribosomal protein L37a (Fragment) OS=Myxine gl... [more]
RL37A_PLAF73.832e-2862.6460S ribosomal protein L37a OS=Plasmodium falciparu... [more]
RL37L_HUMAN2.660e-2158.43Putative 60S ribosomal protein L37a-like OS=Homo s... [more]

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Properties
Property NameValue
Genbank descriptionC01010D09SK Veg1 Citrus clementina cDNA clone C01010D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287518 ID=CX287518; Name=CX287518; organism=Citrus clementina; type=EST; length=567bp
TGCTTGTTGAAGAGCTACAGACCTTCGCTCCAACGCCACAATGACCAAGC
GTACGAAGAAGGCCGGAATCGTTGGAAAGTATGGTACCCGTTACGGTGCC
AGTTTGAGGAAGCAAATTAAGAAGATGGAGGTTAGTCAGCATAGCAAATA
TTTCTGCGAATTTTGCGGGAAGTATGCGGTGAAGAGGAAAGCTGTTGGCA
TTTGGGGCTGCAAGGACTGTGGGAAAGTCAAGGCAGGCGGTGCCTACACT
TTGAACACTGCTAGTGCTGTGACTGTGAGGAGCACAATCCGTAGGTTGAG
GGAGCAAACTGAAAGCTGAGCTTGCCACCATTGGCTTACTCCCGTGTCTT
AGGTCGTTTGATCTTTAGTTTCGGATACAACCTTAAATCATTTTTGATGT
TGCTTTATTTACCAATTTCATGTTTCTAGATGCAAAACAATTGGTTGTTG
GAACATGAAACTTTTGGCTGTGTTTTGACTCTTGAGATGTTCATTCGCTA
TTTTTCCTATGAAATTATGTTATCTAGTGGGTTGATTAAAAAAAAAAAAA
AAAAGGGGGGGCCCGGT
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