CX287606

Overview
NameCX287606
Unique NameCX287606
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length592
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287606 vs. ExPASy Swiss-Prot
Match: PPE2_HUMAN (Serine/threonine-protein phosphatase with EF-hands 2 OS=Homo sapiens GN=PPEF2 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.927e-13
Identity = 40/107 (37.38%), Postives = 60/107 (56.07%), Query Frame = 2
Query:  287 LCEKAKEILMDESNVQPVKS----PVTICGDIHGQFHDLAELFRIGG-KCPDTNYLFMGDYVDRGYYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDE 592
            L  + K+ L+   N+  V +     +T+CGD+HGQ  DL  +F   G   P+ +Y+F GD+VDRG  SVE + +L +  + YP+   + RGNHE   +   YGF  E
Sbjct:  149 LLYETKKHLVQLPNINRVSTCYSEEITVCGDLHGQLDDLIFIFYKNGLPSPERSYVFNGDFVDRGKDSVEILMILFAFMLVYPKEFHLNRGNHEDHMVNLRYGFTKE 255          
BLAST of CX287606 vs. ExPASy Swiss-Prot
Match: RDGC_DROME (Serine/threonine-protein phosphatase rdgC OS=Drosophila melanogaster GN=rdgC PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.993e-13
Identity = 41/115 (35.65%), Postives = 63/115 (54.78%), Query Frame = 2
Query:  263 LSEQEVRVLCEKAKEILMDESNVQPVKSPV----TICGDIHGQFHDLAELFRIGGKCPDTN-YLFMGDYVDRGYYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDE 592
            L  + V ++  +A + L    N+ PV + V    T+CGD+HG+  DL  +    G    +N Y+F GD+VDRG   +E + LL+SL + +P  + + RGNHE   +   YGF  E
Sbjct:  120 LHPKYVALILREAAKSLKQLPNISPVSTAVSQQVTVCGDLHGKLDDLLVVLHKNGLPSSSNPYVFNGDFVDRGKRGLEVLLLLLSLYLAFPNAVFLNRGNHEDSVMNARYGFIRE 234          
BLAST of CX287606 vs. ExPASy Swiss-Prot
Match: PPE2_MOUSE (Serine/threonine-protein phosphatase with EF-hands 2 OS=Mus musculus GN=Ppef2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.453e-12
Identity = 36/82 (43.90%), Postives = 49/82 (59.76%), Query Frame = 2
Query:  350 VTICGDIHGQFHDLAELFRIGG-KCPDTNYLFMGDYVDRGYYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDE 592
            VT+CGD+HGQ  DL  +F   G   P+  Y+F GD+VDRG  SVE + +L +  + YP+   + RGNHE   +   YGF  E
Sbjct:  174 VTVCGDLHGQLDDLIFIFYKNGLPSPERAYVFNGDFVDRGKDSVEVLMVLFAFMLVYPKEFHLNRGNHEDHLVNLRYGFTKE 255          
BLAST of CX287606 vs. ExPASy Swiss-Prot
Match: PPE1_MOUSE (Serine/threonine-protein phosphatase with EF-hands 1 OS=Mus musculus GN=Ppef1 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.230e-11
Identity = 39/104 (37.50%), Postives = 59/104 (56.73%), Query Frame = 2
Query:  296 KAKEILMDESNVQPVKS----PVTICGDIHGQFHDLAELFRIGGKCPDTN-YLFMGDYVDRGYYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDE 592
            +A+++L    N   VK+     +TICGD+HG+  DL  +F   G   + N Y+F GD+VDRG  S+E + +L+   + YP  + + RGNHE   +   YGF  E
Sbjct:  148 EARKVLKQMPNFSHVKTFPAKEITICGDLHGKLDDLMLIFYKNGLPSENNPYVFNGDFVDRGNNSMEILMILLVCFLVYPSDLHLNRGNHEDFMMNLRYGFTKE 251          
The following BLAST results are available for this feature:
BLAST of CX287606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 194
Match NameE-valueIdentityDescription
PPE2_HUMAN2.927e-1337.38Serine/threonine-protein phosphatase with EF-hands... [more]
RDGC_DROME4.993e-1335.65Serine/threonine-protein phosphatase rdgC OS=Droso... [more]
PPE2_MOUSE1.453e-1243.90Serine/threonine-protein phosphatase with EF-hands... [more]
PPE1_MOUSE1.230e-1137.50Serine/threonine-protein phosphatase with EF-hands... [more]

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Properties
Property NameValue
Genbank descriptionC01011D05SK Veg1 Citrus clementina cDNA clone C01011D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287606 ID=CX287606; Name=CX287606; organism=Citrus clementina; type=EST; length=592bp
AATCACTGAAGCCTTCTCTCTTTTTTTTTTAAAATTTTTTTTGTTGAGAT
ACAAAATTGAATTTTGATTATAGGGTTTCGAAAAAATTAGGGTTTGTTTG
TTGAAATTTAGGGTTAGGGTTAGATTAAAAAGAGGAAAGTGAAGGGATCT
GAGTCTGCAAATTAAGAAGAAGAAGGACAAGAAAATGAGCTTGGATTCGG
TCCCTTCAAATTCACATGGAAATCTCGACGAGCAGATTGCTCAGCTTATG
CAGTGCAAGCCCTTATCGGAACAAGAGGTTAGAGTGTTATGCGAAAAGGC
CAAGGAGATATTGATGGATGAAAGTAATGTCCAGCCTGTAAAAAGTCCTG
TTACAATTTGTGGTGATATTCATGGACAATTTCATGATCTTGCAGAGCTT
TTCCGCATTGGAGGAAAGTGTCCAGATACAAACTACTTGTTCATGGGAGA
TTATGTTGACCGTGGTTACTATTCAGTAGAAACTGTTACGCTATTGGTAT
CTCTGAAAGTGCGTTATCCTCAAAGGATTACTATTCTAAGGGGGAATCAT
GAAAGTCGTCAGATTACTCAGGTCTATGGATTCTATGATGAG
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