CX287606

Overview
NameCX287606
Unique NameCX287606
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length592
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287606 vs. ExPASy Swiss-Prot
Match: PPH6_CAEEL (Putative serine/threonine-protein phosphatase pph-6 OS=Caenorhabditis elegans GN=pph-6 PE=2 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 7.650e-38
Identity = 74/122 (60.66%), Postives = 92/122 (75.41%), Query Frame = 2
Query:  227 DEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDE 592
            ++ I    +CK L E +   LC    + L  E+NV PV SPVTICGDIHGQF+DL ELF+ GG  P+T Y+FMGDYVDRG+YS+ETVTLL  L ++YP +IT+LRGNHESR+I+ VYGFYDE
Sbjct:   33 EQWITWASECKYLPESDAVALCATLIDRLSLEANVVPVSSPVTICGDIHGQFYDLLELFKTGGTVPNTKYVFMGDYVDRGHYSLETVTLLFCLLLKYPNQITLLRGNHESRRISNVYGFYDE 154          
BLAST of CX287606 vs. ExPASy Swiss-Prot
Match: PP4C_CANGA (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Candida glabrata GN=PPH3 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.198e-36
Identity = 70/124 (56.45%), Postives = 93/124 (75.00%), Query Frame = 2
Query:  221 NLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDE 592
            +LDE +  L + + + E+ V  LC  ++E+LM+ESNV  V +PVTICGDIHGQ HDL  LF   G    T Y+F+GD+VDRG+YS+E+  LL+  K+RYP RIT++RGNHE+RQIT+VYGFYDE
Sbjct:    4 DLDEILVSLKEGRHIPEETVYALCMDSQELLMNESNVARVDTPVTICGDIHGQLHDLLTLFEKSGGVEKTRYVFLGDFVDRGFYSLESFLLLLVYKLRYPDRITLIRGNHETRQITKVYGFYDE 127          
BLAST of CX287606 vs. ExPASy Swiss-Prot
Match: PP4C_YEAST (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Saccharomyces cerevisiae GN=PPH3 PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 7.160e-36
Identity = 71/124 (57.26%), Postives = 92/124 (74.19%), Query Frame = 2
Query:  221 NLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDE 592
            +LD+ IA L   K + E+ V  LC  ++E+LM+E NV  V +PVTICGDIHGQ HDL  LF   G    T Y+F+GD+VDRG+YS+E+  LL+  K+RYP RIT++RGNHE+RQIT+VYGFYDE
Sbjct:    3 DLDKIIASLRDGKHIPEETVFRLCLNSQELLMNEGNVTQVDTPVTICGDIHGQLHDLLTLFEKSGGVEKTRYIFLGDFVDRGFYSLESFLLLLCYKLRYPDRITLIRGNHETRQITKVYGFYDE 126          
BLAST of CX287606 vs. ExPASy Swiss-Prot
Match: PP4C_KLULA (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Kluyveromyces lactis GN=PPH3 PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.160e-36
Identity = 72/123 (58.54%), Postives = 89/123 (72.36%), Query Frame = 2
Query:  224 LDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDE 592
            LDE I  L Q K + E  +  LC  A+E+LM+ESNV  V +PVTICGDIHGQ HDL  LF   G      Y+F+GD+VDRG+YS+E+  LLV  K+RYP RI ++RGNHE+RQIT+VYGFYDE
Sbjct:    4 LDEIIETLRQGKHVDEDSIYSLCVMAQELLMNESNVTHVDTPVTICGDIHGQLHDLLTLFAKSGGIEKNRYIFLGDFVDRGFYSLESFLLLVCYKLRYPDRIVLIRGNHETRQITKVYGFYDE 126          
BLAST of CX287606 vs. ExPASy Swiss-Prot
Match: PP4C_ASHGO (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Ashbya gossypii GN=PPH3 PE=3 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 3.929e-34
Identity = 68/123 (55.28%), Postives = 89/123 (72.36%), Query Frame = 2
Query:  224 LDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDE 592
            LDE I  L   K + E+ +  LC K +E+L++ESNV  V +PVTICGDIHGQ HDL  LF          ++F+GD+VDRG+YS+E+  LL+  K+RYP RIT++RGNHE+RQIT+VYGFYDE
Sbjct:    6 LDEIIEYLRYSKHIPEETIYELCLKCQELLVNESNVTHVDTPVTICGDIHGQLHDLLTLFEKSEGIEKNRFIFLGDFVDRGFYSLESFLLLLCYKLRYPDRITLIRGNHETRQITKVYGFYDE 128          
BLAST of CX287606 vs. ExPASy Swiss-Prot
Match: PP18_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 8 OS=Arabidopsis thaliana GN=TOPP8 PE=2 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 3.326e-33
Identity = 66/130 (50.77%), Postives = 91/130 (70.00%), Query Frame = 2
Query:  218 GNLDEQIAQLMQCK-----PLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDE 592
            G LD+ I +L++ K      LSE E+R LC  A++I + + N+  + +P+ ICGDIHGQ+ DL  LF  GG  P  NYLF+GDYVDRG  S+ET+ LL++ K+RYP +I +LRGNHE  +I ++YGFYDE
Sbjct:   12 GVLDDIIRRLLEGKGGKQVQLSESEIRQLCFNARQIFLSQPNLLDLHAPIRICGDIHGQYQDLLRLFEYGGYPPSANYLFLGDYVDRGKQSLETICLLLAYKIRYPSKIYLLRGNHEDAKINRIYGFYDE 141          
BLAST of CX287606 vs. ExPASy Swiss-Prot
Match: PP19_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 9 OS=Arabidopsis thaliana GN=TOPP9 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.344e-33
Identity = 66/130 (50.77%), Postives = 91/130 (70.00%), Query Frame = 2
Query:  218 GNLDEQIAQLMQCK-----PLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDE 592
            G LD+ I +L++ K      LSE E+R LC  A++I + + N+  + +P+ ICGDIHGQ+ DL  LF  GG  P  NYLF+GDYVDRG  S+ET+ LL++ K+RYP +I +LRGNHE  +I ++YGFYDE
Sbjct:   12 GVLDDIIRRLLEGKGGKQVQLSEVEIRQLCVNARQIFLSQPNLLELHAPIRICGDIHGQYQDLLRLFEYGGYPPSANYLFLGDYVDRGKQSLETICLLLAYKIRYPSKIFLLRGNHEDAKINRIYGFYDE 141          
BLAST of CX287606 vs. ExPASy Swiss-Prot
Match: GLC7A_CAEEL (Serine/threonine-protein phosphatase PP1-alpha OS=Caenorhabditis elegans GN=gsp-1 PE=2 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 9.677e-33
Identity = 64/132 (48.48%), Postives = 93/132 (70.45%), Query Frame = 2
Query:  221 NLDEQIAQLMQ---CKP-----LSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDE 592
            N+D  I +L++   C+P     +SE E+R LC K++EI + +  +  +++P+ ICGDIHGQ++DL  LF  GG  P+ NYLF+GDYVDRG  S+ET+ LL++ KV+YP+   +LRGNHE   I ++YGFYDE
Sbjct:    8 NIDNLITRLLEVRGCRPGKPVTMSEAEIRALCHKSREIFLSQPILLELEAPLKICGDIHGQYNDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKVKYPENFFLLRGNHECASINRIYGFYDE 139          
BLAST of CX287606 vs. ExPASy Swiss-Prot
Match: GLC7A_CAEBR (Serine/threonine-protein phosphatase PP1-alpha OS=Caenorhabditis briggsae GN=gsp-1 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 9.677e-33
Identity = 64/132 (48.48%), Postives = 93/132 (70.45%), Query Frame = 2
Query:  221 NLDEQIAQLMQ---CKP-----LSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDE 592
            N+D  I +L++   C+P     +SE E+R LC K++EI + +  +  +++P+ ICGDIHGQ++DL  LF  GG  P+ NYLF+GDYVDRG  S+ET+ LL++ KV+YP+   +LRGNHE   I ++YGFYDE
Sbjct:    8 NIDNLITRLLEVRGCRPGKPVTMSEAEIRALCHKSREIFLSQPILLELEAPLKICGDIHGQYNDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKVKYPENFFLLRGNHECASINRIYGFYDE 139          
BLAST of CX287606 vs. ExPASy Swiss-Prot
Match: PP11_ACECL (Serine/threonine-protein phosphatase PP1 isozyme 1 OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.677e-32
Identity = 60/110 (54.55%), Postives = 83/110 (75.45%), Query Frame = 2
Query:  263 LSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDE 592
            L+E E+R+LC  +KEIL ++ N+  +++P+ ICGDIHGQ+ DL  LF  GG  P+ NYLF+GDYVDRG  S+ET+ LL++ K++YP+   ILRGNHE   I ++YGFYDE
Sbjct:   27 LTESEIRLLCLTSKEILSEQPNLLELEAPIKICGDIHGQYTDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAFKIKYPENFFILRGNHECASINRIYGFYDE 136          
The following BLAST results are available for this feature:
BLAST of CX287606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 194
Match NameE-valueIdentityDescription
PPH6_CAEEL7.650e-3860.66Putative serine/threonine-protein phosphatase pph-... [more]
PP4C_CANGA4.198e-3656.45Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP4C_YEAST7.160e-3657.26Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP4C_KLULA7.160e-3658.54Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP4C_ASHGO3.929e-3455.28Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP18_ARATH3.326e-3350.77Serine/threonine-protein phosphatase PP1 isozyme 8... [more]
PP19_ARATH4.344e-3350.77Serine/threonine-protein phosphatase PP1 isozyme 9... [more]
GLC7A_CAEEL9.677e-3348.48Serine/threonine-protein phosphatase PP1-alpha OS=... [more]
GLC7A_CAEBR9.677e-3348.48Serine/threonine-protein phosphatase PP1-alpha OS=... [more]
PP11_ACECL3.677e-3254.55Serine/threonine-protein phosphatase PP1 isozyme 1... [more]

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Properties
Property NameValue
Genbank descriptionC01011D05SK Veg1 Citrus clementina cDNA clone C01011D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287606 ID=CX287606; Name=CX287606; organism=Citrus clementina; type=EST; length=592bp
AATCACTGAAGCCTTCTCTCTTTTTTTTTTAAAATTTTTTTTGTTGAGAT
ACAAAATTGAATTTTGATTATAGGGTTTCGAAAAAATTAGGGTTTGTTTG
TTGAAATTTAGGGTTAGGGTTAGATTAAAAAGAGGAAAGTGAAGGGATCT
GAGTCTGCAAATTAAGAAGAAGAAGGACAAGAAAATGAGCTTGGATTCGG
TCCCTTCAAATTCACATGGAAATCTCGACGAGCAGATTGCTCAGCTTATG
CAGTGCAAGCCCTTATCGGAACAAGAGGTTAGAGTGTTATGCGAAAAGGC
CAAGGAGATATTGATGGATGAAAGTAATGTCCAGCCTGTAAAAAGTCCTG
TTACAATTTGTGGTGATATTCATGGACAATTTCATGATCTTGCAGAGCTT
TTCCGCATTGGAGGAAAGTGTCCAGATACAAACTACTTGTTCATGGGAGA
TTATGTTGACCGTGGTTACTATTCAGTAGAAACTGTTACGCTATTGGTAT
CTCTGAAAGTGCGTTATCCTCAAAGGATTACTATTCTAAGGGGGAATCAT
GAAAGTCGTCAGATTACTCAGGTCTATGGATTCTATGATGAG
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