CX287617

Overview
NameCX287617
Unique NameCX287617
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length426
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287617 vs. ExPASy Swiss-Prot
Match: Y5659_ARATH (Probable inactive receptor kinase At5g16590 OS=Arabidopsis thaliana GN=At5g16590 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 3.072e-36
Identity = 69/139 (49.64%), Postives = 101/139 (72.66%), Query Frame = 3
Query:    9 GRTPLDWETRVKILLGTARGVAHIHSMGGPKFTHGNIKASNVLINQDLDGCISDFGLTPLMNVPATPSRSAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAPLQSPTRDDMVDLPRWVQSVVREEWTAEVFDVEL 425
            GR+PL+WETR  I LG AR ++++HS      +HGNIK+SN+L+++  +  +SD+ L P+++  +TP+R  GYRAPEV + RK S K+DVYSFGVL+LE+LTGK+P      ++ VDLPRWV S+  ++  ++VFD EL
Sbjct:  434 GRSPLNWETRANIALGAARAISYLHSRDATT-SHGNIKSSNILLSESFEAKVSDYCLAPMISPTSTPNRIDGYRAPEVTDARKISQKADVYSFGVLILELLTGKSPTHQQLHEEGVDLPRWVSSITEQQSPSDVFDPEL 571          
BLAST of CX287617 vs. ExPASy Swiss-Prot
Match: IMK2_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase IMK2 OS=Arabidopsis thaliana GN=IMK2 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.132e-29
Identity = 70/147 (47.62%), Postives = 98/147 (66.67%), Query Frame = 3
Query:    3 ARG-RTPLDWETRVKILLGTARGVAHIHSMGGPKFTHGNIKASNVLINQDLDGCISDFGLTPLMNVPATPSRSA-----GYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAPLQSPTRDDMVDLPRWVQSVVREEWTAEVFDVEL 425
            ARG  T + WETR+KI  G +RG+AH+HS       H N+ ASN+L+++  +  I+D+GL+ LM   A  +  A     GYRAPE  + +  S K+DVYS G+++LE+LTGK+P   PT    +DLP+WV S+V+EEWT EVFD+EL
Sbjct:  625 ARGPETLIPWETRMKIAKGISRGLAHLHS--NENMIHENLTASNILLDEQTNAHIADYGLSRLMTAAAATNVIATAGTLGYRAPEFSKIKNASAKTDVYSLGIIILELLTGKSP-GEPTNG--MDLPQWVASIVKEEWTNEVFDLEL 766          
BLAST of CX287617 vs. ExPASy Swiss-Prot
Match: IMK3_ARATH (Probable leucine-rich repeat receptor-like protein kinase IMK3 OS=Arabidopsis thaliana GN=IMK3 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.959e-28
Identity = 63/140 (45.00%), Postives = 97/140 (69.29%), Query Frame = 3
Query:   21 LDWETRVKILLGTARGVAHIHSMGGPKFTHGNIKASNVLINQDLDGCISDFGLTPLMNVPATPSRSA-----GYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAPLQSPTRDDMVDLPRWVQSVVREEWTAEVFDVEL 425
            ++W TR+ ++ G ARG+ ++H+       HGN+ +SNVL+++++   ISD+GL+ LM   A  S  A     GYRAPE+ + +K + K+DVYS GV++LE+LTGK+P ++    + VDLP+WV + V+EEWT EVFD+EL
Sbjct:  583 INWPTRMSLIKGMARGLFYLHTHAN--IIHGNLTSSNVLLDENITAKISDYGLSRLMTAAAGSSVIATAGALGYRAPELSKLKKANTKTDVYSLGVIILELLTGKSPSEAL---NGVDLPQWVATAVKEEWTNEVFDLEL 717          
BLAST of CX287617 vs. ExPASy Swiss-Prot
Match: Y4312_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g31250 OS=Arabidopsis thaliana GN=At4g31250 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.697e-24
Identity = 57/144 (39.58%), Postives = 90/144 (62.50%), Query Frame = 3
Query:    9 GRTPLDWETRVKILLGTARGVAHIHSMGGP-KFTHGNIKASNVLINQDLDGCISDFGLTPLMNVPATPSRSAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAPL----QSPTRDDMVDLPRWVQSVVREEWTAEVFDVEL 425
            G+  LDW  R+KI+ G  RG+A+++ +       HG++K+SNVL++ + +  ++D+ L P++N   +      Y+APE  +  + S +SDV+S G+L+LE+LTGK P     Q    DD  +L  WV+SV R EWTA+VFD E+
Sbjct:  458 GQVVLDWPIRLKIVRGVTRGLAYLYRVFPDLNLPHGHLKSSNVLLDPNFEPLLTDYALVPVVNRDQSQQFMVAYKAPEFTQQDRTSRRSDVWSLGILILEILTGKFPANYLRQGKGADD--ELAAWVESVARTEWTADVFDKEM 599          
BLAST of CX287617 vs. ExPASy Swiss-Prot
Match: Y2317_ARATH (Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.284e-23
Identity = 57/138 (41.30%), Postives = 88/138 (63.77%), Query Frame = 3
Query:   21 LDWETRVKILLGTARGVAHIHSMGGPKFTHGNIKASNVLINQDLDGCISDFGLTPLMNVPATPSRSA-----GYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAPLQSPTRDDMVDLPRWVQSVVRE-EWTAEVFD 416
            +DW TR  I LG A G+A++H    P+  H +IK++N+LI+++ +  + DFGL  ++++P + S SA     GY APE   T K + K D+YSFGV+LLE+LTGKAP+Q   +    DL  W ++ +R+   T+E+ D
Sbjct:  921 MDWPTRFAIALGAAEGLAYLHHDCKPRIIHRDIKSNNILIDENFEAHVGDFGLAKVIDMPLSKSVSAVAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELLTGKAPVQPLEQGG--DLATWTRNHIRDHSLTSEILD 1056          
BLAST of CX287617 vs. ExPASy Swiss-Prot
Match: BAK1_ARATH (BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1 PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 2.284e-23
Identity = 56/143 (39.16%), Postives = 89/143 (62.24%), Query Frame = 3
Query:   18 PLDWETRVKILLGTARGVAHIHSMGGPKFTHGNIKASNVLINQDLDGCISDFGLTPLMNVPATPSRSA-----GYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKA--PLQSPTRDDMVDLPRWVQSVVREEWTAEVFDVEL 425
            PLDW  R +I LG+ARG+A++H    PK  H ++KA+N+L++++ +  + DFGL  LM+   T   +A     G+ APE + T K S K+DV+ +GV+LLE++TG+    L     DD V L  WV+ +++E+    + DV+L
Sbjct:  384 PLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDL 526          
BLAST of CX287617 vs. ExPASy Swiss-Prot
Match: TMKL1_ARATH (Putative kinase-like protein TMKL1 OS=Arabidopsis thaliana GN=TMKL1 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.895e-23
Identity = 59/140 (42.14%), Postives = 91/140 (65.00%), Query Frame = 3
Query:   21 LDWETRVKILLGTARGVAHIHSMGGPKFTHGNIKASNVLINQDLDGCISDFGLTPLM-----NVPATPSRSAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAPLQSPTR-DDMVDLPRWVQSVVREEWTAEVFDVE 422
            L+W  R KI LG ARG+A++H+       HGNI++ NVL++      +++FGL  +M     +   + ++S GY+APE+ + +K + +SDVY+FG+LLLE+L GK P +S    ++ VDLP  V++ V EE T EVFD+E
Sbjct:  469 LNWARRHKIALGIARGLAYLHTGQEVPIIHGNIRSKNVLVDDFFFARLTEFGLDKIMVQAVADEIVSQAKSDGYKAPELHKMKKCNPRSDVYAFGILLLEILMGKKPGKSGRNGNEFVDLPSLVKAAVLEETTMEVFDLE 608          
BLAST of CX287617 vs. ExPASy Swiss-Prot
Match: SERK1_ARATH (Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 8.677e-23
Identity = 54/143 (37.76%), Postives = 89/143 (62.24%), Query Frame = 3
Query:   18 PLDWETRVKILLGTARGVAHIHSMGGPKFTHGNIKASNVLINQDLDGCISDFGLTPLMNVPATPSRSA-----GYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKA--PLQSPTRDDMVDLPRWVQSVVREEWTAEVFDVEL 425
            PLDW TR +I LG+ARG++++H    PK  H ++KA+N+L++++ +  + DFGL  LM+   T   +A     G+ APE + T K S K+DV+ +G++LLE++TG+    L     DD V L  WV+ +++E+    + D +L
Sbjct:  397 PLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDL 539          
BLAST of CX287617 vs. ExPASy Swiss-Prot
Match: FEI2_ARATH (LRR receptor-like serine/threonine-protein kinase FEI 2 OS=Arabidopsis thaliana GN=FEI2 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.933e-22
Identity = 49/138 (35.51%), Postives = 89/138 (64.49%), Query Frame = 3
Query:   21 LDWETRVKILLGTARGVAHIHSMGGPKFTHGNIKASNVLINQDLDGCISDFGLTPLM-----NVPATPSRSAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAPLQSPTRDDMVDLPRWVQSVVREEWTAEVFDV 419
            LDW++RV I++G A+G+A++H    P+  H +IK+SN+L++ +L+  +SDFGL  L+     ++    + + GY APE +++ + + K+DVYSFGVL+LE+L+GK P  +   +   ++  W+  ++ E    E+ D+
Sbjct:  396 LDWDSRVNIIIGAAKGLAYLHHDCSPRIIHRDIKSSNILLDGNLEARVSDFGLAKLLEDEESHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKLPTDASFIEKGFNIVGWLNFLISENRAKEIVDL 533          
BLAST of CX287617 vs. ExPASy Swiss-Prot
Match: SERK4_ARATH (Somatic embryogenesis receptor kinase 4 OS=Arabidopsis thaliana GN=SERK4 PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 3.297e-22
Identity = 55/146 (37.67%), Postives = 85/146 (58.22%), Query Frame = 3
Query:    9 GRTPLDWETRVKILLGTARGVAHIHSMGGPKFTHGNIKASNVLINQDLDGCISDFGLTPLMN-----VPATPSRSAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKA--PLQSPTRDDMVDLPRWVQSVVREEWTAEVFDVEL 425
            G   LDW  R  I LG+ARG+A++H     K  H ++KA+N+L++++ +  + DFGL  LMN     V      + G+ APE + T K S K+DV+ +GV+LLE++TG+    L     DD + L  WV+ V++E+    + D EL
Sbjct:  386 GNPALDWPKRKHIALGSARGLAYLHDHCDQKIIHRDVKAANILLDEEFEAVVGDFGLAKLMNYNDSHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQKAFDLARLANDDDIMLLDWVKEVLKEKKLESLVDAEL 531          
The following BLAST results are available for this feature:
BLAST of CX287617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 246
Match NameE-valueIdentityDescription
Y5659_ARATH3.072e-3649.64Probable inactive receptor kinase At5g16590 OS=Ara... [more]
IMK2_ARATH2.132e-2947.62Probably inactive leucine-rich repeat receptor-lik... [more]
IMK3_ARATH8.959e-2845.00Probable leucine-rich repeat receptor-like protein... [more]
Y4312_ARATH2.697e-2439.58Probable LRR receptor-like serine/threonine-protei... [more]
Y2317_ARATH2.284e-2341.30Probable leucine-rich repeat receptor-like protein... [more]
BAK1_ARATH2.284e-2339.16BRASSINOSTEROID INSENSITIVE 1-associated receptor ... [more]
TMKL1_ARATH3.895e-2342.14Putative kinase-like protein TMKL1 OS=Arabidopsis ... [more]
SERK1_ARATH8.677e-2337.76Somatic embryogenesis receptor kinase 1 OS=Arabido... [more]
FEI2_ARATH1.933e-2235.51LRR receptor-like serine/threonine-protein kinase ... [more]
SERK4_ARATH3.297e-2237.67Somatic embryogenesis receptor kinase 4 OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionC01011E04SK Veg1 Citrus clementina cDNA clone C01011E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287617 ID=CX287617; Name=CX287617; organism=Citrus clementina; type=EST; length=426bp
CGGCACGAGGTAGAACTCCACTGGACTGGGAGACAAGAGTAAAGATATTG
CTTGGGACAGCAAGGGGCGTTGCCCACATTCATTCTATGGGTGGTCCAAA
ATTCACTCATGGAAATATTAAAGCCTCAAATGTCCTCATCAACCAAGATC
TTGATGGATGCATCTCTGATTTTGGACTGACCCCTCTTATGAATGTCCCT
GCCACACCATCTCGGAGTGCAGGCTACCGTGCTCCTGAGGTGATTGAAAC
CCGTAAGCACAGTCATAAATCAGACGTGTATAGTTTTGGTGTCCTTCTCC
TTGAGATGCTGACTGGGAAAGCTCCACTCCAGTCACCAACGCGTGATGAT
ATGGTTGATCTCCCTAGGTGGGTTCAGTCTGTTGTTCGGGAAGAATGGAC
AGCTGAGGTTTTTGATGTCGAGTTGA
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