CX287617

Overview
NameCX287617
Unique NameCX287617
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length426
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287617 vs. ExPASy Swiss-Prot
Match: RLK_ARATH (Probable LRR receptor-like serine/threonine-protein kinase RLK OS=Arabidopsis thaliana GN=RLK PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.307e-22
Identity = 51/137 (37.23%), Postives = 82/137 (59.85%), Query Frame = 3
Query:    9 GRTPLDWETRVKILLGTARGVAHIHS-MGGPKFTHGNIKASNVLINQDLDGCISDFGLTPLMNVPATPSRSAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAPLQSPTRDDMVDLPRWVQSVVREEWTAEVFD 416
            G+  LDW TR+KI+ G A+G+ ++H  +      HG++K+SNVL+ +  +  ++D+GL PL+N        A YR+PE ++ R+ + K+DV+  G+L+LE+LTGK P    ++    DL  WV S     W   +FD
Sbjct:  449 GKPSLDWPTRLKIVKGVAKGLFYLHQDLPSLMAPHGHLKSSNVLLTKTFEPLLTDYGLIPLINQEKAQMHMAAYRSPEYLQHRRITKKTDVWGLGILILEILTGKFPANF-SQSSEEDLASWVNSGFHGVWAPSLFD 584          
BLAST of CX287617 vs. ExPASy Swiss-Prot
Match: Y2296_ARATH (Probable receptor-like protein kinase At2g42960 OS=Arabidopsis thaliana GN=At2g42960 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.625e-22
Identity = 56/140 (40.00%), Postives = 82/140 (58.57%), Query Frame = 3
Query:   21 LDWETRVKILLGTARGVAHIHSMGGPKFTHGNIKASNVLINQDLDGCISDFGLTPLM-----NVPATPSRSAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAPLQSPTRDDMVDLPRWVQSVVREEWTAEVFDVEL 425
            L WE R+KI+ GTA+ +A++H    PK  H +IKASN+LI+ + +  +SDFGL  L+     ++      + GY APE   T   + KSD+YSFGVLLLE +TG+ P+      + V+L  W++ +V      EV D  L
Sbjct:  278 LTWEARMKIITGTAQALAYLHEAIEPKVVHRDIKASNILIDDEFNAKLSDFGLAKLLDSGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYGRPANEVNLVEWLKMMVGTRRAEEVVDPRL 417          
BLAST of CX287617 vs. ExPASy Swiss-Prot
Match: SERK5_ARATH (Somatic embryogenesis receptor kinase 5 OS=Arabidopsis thaliana GN=SERK5 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 5.625e-22
Identity = 55/146 (37.67%), Postives = 85/146 (58.22%), Query Frame = 3
Query:    9 GRTPLDWETRVKILLGTARGVAHIHSMGGPKFTHGNIKASNVLINQDLDGCISDFGLTPLMN-----VPATPSRSAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKA--PLQSPTRDDMVDLPRWVQSVVREEWTAEVFDVEL 425
            G   LDW  R  I LG+ARG+A++H     K  H ++KA+N+L++++ +  + DFGL  LMN     V      + G+ APE + T K S K+DV+ +GV+LLE++TG+    L     DD + L  WV+ V++E+    + D EL
Sbjct:  367 GNPALDWPKRKHIALGSARGLAYLHDHCDQKIIHLDVKAANILLDEEFEAVVGDFGLAKLMNYNDSHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQKAFDLARLANDDDIMLLDWVKEVLKEKKLESLVDAEL 512          
BLAST of CX287617 vs. ExPASy Swiss-Prot
Match: FEI1_ARATH (LRR receptor-like serine/threonine-protein kinase FEI 1 OS=Arabidopsis thaliana GN=FEI1 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.346e-22
Identity = 47/137 (34.31%), Postives = 91/137 (66.42%), Query Frame = 3
Query:   21 LDWETRVKILLGTARGVAHIHSMGGPKFTHGNIKASNVLINQDLDGCISDFGLTPLM-----NVPATPSRSAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAPLQSPTRDDMVDLPRWVQSVVREEWTAEVFD 416
            LDW++RV I++G A+G++++H    P+  H +IK+SN+L++ +L+  +SDFGL  L+     ++    + + GY APE +++ + + K+DVYSFGVL+LE+L+GK P  +   +  +++  W++ ++ E+   ++ D
Sbjct:  398 LDWDSRVNIIIGAAKGLSYLHHDCSPRIIHRDIKSSNILLDGNLEARVSDFGLAKLLEDEESHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNVVGWLKFLISEKRPRDIVD 534          
BLAST of CX287617 vs. ExPASy Swiss-Prot
Match: SRF5_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsis thaliana GN=SRF5 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.253e-21
Identity = 51/118 (43.22%), Postives = 72/118 (61.02%), Query Frame = 3
Query:   18 PLDWETRVKILLGTARGVAHIHSMGGPKFTHGNIKASNVLINQDLDGCISDFGLTPLMNVPATPSRSAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAPLQSPTRDDMVDLPRW 371
            PL W TRV+I LGTAR V ++H    P   H NIK+SN+L++ DL+  +SD+GL+    +  + +   GY APE  +   ++ KSDVYSFGV++LE+LTG+ P           L RW
Sbjct:  500 PLTWNTRVRIALGTARAVEYLHEACSPSVMHKNIKSSNILLDADLNPRLSDYGLSKFY-LRTSQNLGEGYNAPEARDPSAYTPKSDVYSFGVVMLELLTGRVPFDGEKPRPERSLVRW 616          
BLAST of CX287617 vs. ExPASy Swiss-Prot
Match: SRF4_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsis thaliana GN=SRF4 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.636e-21
Identity = 48/125 (38.40%), Postives = 76/125 (60.80%), Query Frame = 3
Query:   18 PLDWETRVKILLGTARGVAHIHSMGGPKFTHGNIKASNVLINQDLDGCISDFGLTPLMNVPATPSRSAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAPLQSPTRDDMVDLPRWVQSVVRE 392
            PL W TR++I LGTA+ + ++H    P   H NIK+SN+L++ +L+  +SD+GL    +   + +   GY APE  +   ++ KSDVYSFGV++LE+LTG+ P  S        L RW +  +++
Sbjct:  511 PLTWNTRIRIALGTAKAIEYLHETCSPPLVHKNIKSSNILLDNELNPRLSDYGLANFHH-RTSQNLGVGYNAPECTDPSAYTQKSDVYSFGVVMLELLTGRKPYDSGRPKAEQSLVRWAKPQLKD 634          
BLAST of CX287617 vs. ExPASy Swiss-Prot
Match: BRI1_ARATH (Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.636e-21
Identity = 58/141 (41.13%), Postives = 88/141 (62.41%), Query Frame = 3
Query:   21 LDWETRVKILLGTARGVAHIHSMGGPKFTHGNIKASNVLINQDLDGCISDFGLTPLMNV------PATPSRSAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAPLQSPTRDDMVDLPRWVQSVVREEWTAEVFDVEL 425
            L+W TR KI +G+ARG+A +H    P   H ++K+SNVL++++L+  +SDFG+  LM+        +T + + GY  PE  ++ + S K DVYS+GV+LLE+LTGK P  SP   D  +L  WV+   +    ++VFD EL
Sbjct:  978 LNWSTRRKIAIGSARGLAFLHHNCSPHIIHRDMKSSNVLLDENLEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTDSPDFGDN-NLVGWVKQHAKLR-ISDVFDPEL 1116          
BLAST of CX287617 vs. ExPASy Swiss-Prot
Match: BRL3_ARATH (Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.137e-21
Identity = 55/146 (37.67%), Postives = 86/146 (58.90%), Query Frame = 3
Query:    6 RGRTPLDWETRVKILLGTARGVAHIHSMGGPKFTHGNIKASNVLINQDLDGCISDFGLTPLMNV------PATPSRSAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAPLQSPTRDDMVDLPRWVQSVVREEWTAEVFDVEL 425
            +G   LDW  R KI +G ARG+A +H    P   H ++K+SNVL++QD    +SDFG+  L++        +T + + GY  PE  ++ + + K DVYS+GV+LLE+L+GK P+      +  +L  W + + RE+  AE+ D EL
Sbjct:  949 KGGIFLDWSARKKIAIGAARGLAFLHHSCIPHIIHRDMKSSNVLLDQDFVARVSDFGMARLVSALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKGDVYSYGVILLELLSGKKPIDPEEFGEDNNLVGWAKQLYREKRGAEILDPEL 1094          
BLAST of CX287617 vs. ExPASy Swiss-Prot
Match: RPK1_IPONI (Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 3.646e-21
Identity = 59/134 (44.03%), Postives = 81/134 (60.45%), Query Frame = 3
Query:   18 PLDWETRVKILLGTARGVAHIHSMGGPKFTHGNIKASNVLINQDLDGCISDFGLTPLMNVPAT--PSRSA----GYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAPLQSPTRDDMVDLPRWVQSVVREEWT 401
            PLDW TR  I +GTA G+A++H    P   H +IK  N+L++ DL+  ISDFG+  L++  AT  PS +     GY APE   T   S +SDVYS+GV+LLE++T K  L  P+ +   D+  WV+SV    WT
Sbjct:  910 PLDWSTRHNIAVGTAHGLAYLHFDCDPAIVHRDIKPMNILLDSDLEPHISDFGIAKLLDQSATSIPSNTVQGTIGYMAPENAFTTVKSRESDVYSYGVVLLELITRKKAL-DPSFNGETDIVGWVRSV----WT 1038          
BLAST of CX287617 vs. ExPASy Swiss-Prot
Match: SERK2_ARATH (Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana GN=SERK2 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.761e-21
Identity = 52/143 (36.36%), Postives = 87/143 (60.84%), Query Frame = 3
Query:   18 PLDWETRVKILLGTARGVAHIHSMGGPKFTHGNIKASNVLINQDLDGCISDFGLTPLMNVPATPSRSA-----GYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKA--PLQSPTRDDMVDLPRWVQSVVREEWTAEVFDVEL 425
            PL W  R +I LG+ARG++++H    PK  H ++KA+N+L++++ +  + DFGL  LM+   T   +A     G+ APE + T K S K+DV+ +G++LLE++TG+    L     DD V L  WV+ +++E+    + D +L
Sbjct:  400 PLAWSIRQQIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLARLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDL 542          
The following BLAST results are available for this feature:
BLAST of CX287617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 246
Match NameE-valueIdentityDescription
RLK_ARATH4.307e-2237.23Probable LRR receptor-like serine/threonine-protei... [more]
Y2296_ARATH5.625e-2240.00Probable receptor-like protein kinase At2g42960 OS... [more]
SERK5_ARATH5.625e-2237.67Somatic embryogenesis receptor kinase 5 OS=Arabido... [more]
FEI1_ARATH7.346e-2234.31LRR receptor-like serine/threonine-protein kinase ... [more]
SRF5_ARATH1.253e-2143.22Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsi... [more]
SRF4_ARATH1.636e-2138.40Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsi... [more]
BRI1_ARATH1.636e-2141.13Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidops... [more]
BRL3_ARATH2.137e-2137.67Receptor-like protein kinase BRI1-like 3 OS=Arabid... [more]
RPK1_IPONI3.646e-2144.03Receptor-like protein kinase OS=Ipomoea nil GN=INR... [more]
SERK2_ARATH4.761e-2136.36Somatic embryogenesis receptor kinase 2 OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionC01011E04SK Veg1 Citrus clementina cDNA clone C01011E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287617 ID=CX287617; Name=CX287617; organism=Citrus clementina; type=EST; length=426bp
CGGCACGAGGTAGAACTCCACTGGACTGGGAGACAAGAGTAAAGATATTG
CTTGGGACAGCAAGGGGCGTTGCCCACATTCATTCTATGGGTGGTCCAAA
ATTCACTCATGGAAATATTAAAGCCTCAAATGTCCTCATCAACCAAGATC
TTGATGGATGCATCTCTGATTTTGGACTGACCCCTCTTATGAATGTCCCT
GCCACACCATCTCGGAGTGCAGGCTACCGTGCTCCTGAGGTGATTGAAAC
CCGTAAGCACAGTCATAAATCAGACGTGTATAGTTTTGGTGTCCTTCTCC
TTGAGATGCTGACTGGGAAAGCTCCACTCCAGTCACCAACGCGTGATGAT
ATGGTTGATCTCCCTAGGTGGGTTCAGTCTGTTGTTCGGGAAGAATGGAC
AGCTGAGGTTTTTGATGTCGAGTTGA
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