CX287617

Overview
NameCX287617
Unique NameCX287617
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length426
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287617 vs. ExPASy Swiss-Prot
Match: DRKA_DICDI (Probable serine/threonine-protein kinase drkA OS=Dictyostelium discoideum GN=drkA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.619e-11
Identity = 32/104 (30.77%), Postives = 65/104 (62.50%), Query Frame = 3
Query:   21 LDWETRVKILLGTARGVAHIHSMGGPKFTHGNIKASNVLINQDLDGCISDFGLTPLMNVPATPSRSAG--YRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAP 326
            L W   +K+++  A+GV ++H+   P   H ++K+ N+L++++    ++DFGL+ +    AT +      + +PEV+ +++++ K+DVYSFG++L E  T + P
Sbjct:  467 LQWSLLIKMMIDAAKGVIYLHN-STPVILHRDLKSHNLLVDENWKVKVADFGLSTIEQQGATMTACGTPCWTSPEVLRSQRYTEKADVYSFGIILWECATRQDP 569          
BLAST of CX287617 vs. ExPASy Swiss-Prot
Match: BYR2_SCHPO (Protein kinase byr2 OS=Schizosaccharomyces pombe GN=byr2 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.619e-11
Identity = 43/132 (32.58%), Postives = 74/132 (56.06%), Query Frame = 3
Query:   30 ETRVK-ILLGTARGVAHIHSMGGPKFTHGNIKASNVLINQDLDGCISDFGLTPLMNVPATPSRSAGYR----------APEVIETRKHSHKSDVYSFGVLLLEMLTGKAPLQSPTRDDMVDLPRWVQSVVRE 392
            ET VK  +  T +G+ ++HS G     H +IK +N+L++      ISDFG++  + + +T +++ G R          APEV++   H+ K+D++S G L++EMLT K P   P  D M  + R  ++++ E
Sbjct:  496 ETLVKNFIKQTLKGLEYLHSRG---IVHRDIKGANILVDNKGKIKISDFGISKKLELNSTSTKTGGARPSFQGSSFWMAPEVVKQTMHTEKTDIWSLGCLVIEMLTSKHPY--PNCDQMQAIFRIGENILPE 622          
BLAST of CX287617 vs. ExPASy Swiss-Prot
Match: IRAK3_HUMAN (Interleukin-1 receptor-associated kinase 3 OS=Homo sapiens GN=IRAK3 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.467e-11
Identity = 37/128 (28.91%), Postives = 68/128 (53.12%), Query Frame = 3
Query:   18 PLDWETRVKILLGTARGVAHIHSMGGPKFTHGNIKASNVLINQDLDGCISDFGLTPL----------MNVPATPSRSAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTG-KAPLQSPTRDDMVDLPR 368
            PL W  R+ IL+G ++ + ++H++       G+I ++N+L++      ++DF +             +N+ ++ S+   Y   E I   K S K+DVYSFG++++E+LTG +  L  P    + DL R
Sbjct:  261 PLPWHIRIGILIGISKAIHYLHNVQPCSVICGSISSANILLDDQFQPKLTDFAMAHFRSHLEHQSCTINMTSSSSKHLWYMPEEYIRQGKLSIKTDVYSFGIVIMEVLTGCRVVLDDPKHIQLRDLLR 388          
BLAST of CX287617 vs. ExPASy Swiss-Prot
Match: Y1839_ARATH (Probable serine/threonine-protein kinase At1g18390 OS=Arabidopsis thaliana GN=At1g18390 PE=1 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.619e-11
Identity = 35/103 (33.98%), Postives = 63/103 (61.17%), Query Frame = 3
Query:   21 LDWETRVKILLGTARGVAHIHSMGGPKFTHGNIKASNVLINQDLDGCISDFGLTPLM-----NVPATPSRSAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLT 314
            L W  R+KI + TA  + ++H+    K  H ++K++N+L++Q+ +  ++DFGL+ L      +V   P  + GY  P+     + S+KSDVYSF V+L+E+++
Sbjct:  440 LPWSIRLKIAVETASALKYLHAS---KIIHRDVKSNNILLDQNFNVKVADFGLSRLFPMDKTHVSTAPQGTPGYVDPDYHLCYQLSNKSDVYSFAVVLMELIS 539          
BLAST of CX287617 vs. ExPASy Swiss-Prot
Match: IRAK4_HUMAN (Interleukin-1 receptor-associated kinase 4 OS=Homo sapiens GN=IRAK4 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.619e-11
Identity = 43/109 (39.45%), Postives = 59/109 (54.13%), Query Frame = 3
Query:    9 GRTPLDWETRVKILLGTARGVAHIHSMGGPKFTHGNIKASNVLINQDLDGCISDFGLTPLMNVPATP---SRSAG---YRAPEVIETRKHSHKSDVYSFGVLLLEMLTG 317
            G  PL W  R KI  G A G+  +H        H +IK++N+L+++     ISDFGL       A     SR  G   Y APE +   + + KSD+YSFGV+LLE++TG
Sbjct:  279 GTPPLSWHMRCKIAQGAANGINFLHEN---HHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITG 383          
BLAST of CX287617 vs. ExPASy Swiss-Prot
Match: DRKD_DICDI (Probable serine/threonine-protein kinase drkD OS=Dictyostelium discoideum GN=drkD PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.619e-11
Identity = 37/128 (28.91%), Postives = 68/128 (53.12%), Query Frame = 3
Query:   21 LDWETRVKILLGTARGVAHIHSMGGPKFTHGNIKASNVLINQDLDGCISDFGLTPLMN--VPATPSRSAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAP---------LQSPTRDDMVDLPRW 371
            +DW  R+++    ARG+ ++HS   P   H ++K  N+L++      ++DFGL  + +     T   + G+ APEV+    ++ K+DVYS+ ++L E+LT   P         ++S  R + + +P W
Sbjct:  944 MDWGLRLQLGFDCARGMTYLHSRN-PIIIHRDLKTDNLLVDDSWQVKVADFGLATVKSHTFAKTMCGTTGWVAPEVLAEEGYTEKADVYSYAIVLWELLTRLIPYAGKNTMQVVRSIDRGERLPMPAW 1070          
The following BLAST results are available for this feature:
BLAST of CX287617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 246
Match NameE-valueIdentityDescription
DRKA_DICDI2.619e-1130.77Probable serine/threonine-protein kinase drkA OS=D... [more]
BYR2_SCHPO2.619e-1132.58Protein kinase byr2 OS=Schizosaccharomyces pombe G... [more]
IRAK3_HUMAN4.467e-1128.91Interleukin-1 receptor-associated kinase 3 OS=Homo... [more]
Y1839_ARATH7.619e-1133.98Probable serine/threonine-protein kinase At1g18390... [more]
IRAK4_HUMAN7.619e-1139.45Interleukin-1 receptor-associated kinase 4 OS=Homo... [more]
DRKD_DICDI7.619e-1128.91Probable serine/threonine-protein kinase drkD OS=D... [more]

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Properties
Property NameValue
Genbank descriptionC01011E04SK Veg1 Citrus clementina cDNA clone C01011E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287617 ID=CX287617; Name=CX287617; organism=Citrus clementina; type=EST; length=426bp
CGGCACGAGGTAGAACTCCACTGGACTGGGAGACAAGAGTAAAGATATTG
CTTGGGACAGCAAGGGGCGTTGCCCACATTCATTCTATGGGTGGTCCAAA
ATTCACTCATGGAAATATTAAAGCCTCAAATGTCCTCATCAACCAAGATC
TTGATGGATGCATCTCTGATTTTGGACTGACCCCTCTTATGAATGTCCCT
GCCACACCATCTCGGAGTGCAGGCTACCGTGCTCCTGAGGTGATTGAAAC
CCGTAAGCACAGTCATAAATCAGACGTGTATAGTTTTGGTGTCCTTCTCC
TTGAGATGCTGACTGGGAAAGCTCCACTCCAGTCACCAACGCGTGATGAT
ATGGTTGATCTCCCTAGGTGGGTTCAGTCTGTTGTTCGGGAAGAATGGAC
AGCTGAGGTTTTTGATGTCGAGTTGA
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