CX287617

Overview
NameCX287617
Unique NameCX287617
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length426
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287617 vs. ExPASy Swiss-Prot
Match: Y5977_ARATH (Probable leucine-rich repeat receptor-like protein kinase At5g49770 OS=Arabidopsis thaliana GN=At5g49770 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.820e-19
Identity = 43/109 (39.45%), Postives = 71/109 (65.14%), Query Frame = 3
Query:   21 LDWETRVKILLGTARGVAHIHSMGGPKFTHGNIKASNVLINQDLDGCISDFGLTPLM------NVPATPSRSAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAPL 329
            LDW  R+KI LG+ +G+A++H +  P   H ++K++N+L+++ L   ++DFGL+ L+      +V      + GY  PE   T + + KSDVY FGV++LE+LTGK+P+
Sbjct:  727 LDWTRRLKIALGSGKGLAYLHELADPPIIHRDVKSNNILLDEHLTAKVADFGLSKLVGDPEKAHVTTQVKGTMGYLDPEYYMTNQLTEKSDVYGFGVVMLELLTGKSPI 835          
BLAST of CX287617 vs. ExPASy Swiss-Prot
Match: Y1765_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07650 OS=Arabidopsis thaliana GN=At1g07650 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.820e-19
Identity = 55/143 (38.46%), Postives = 77/143 (53.85%), Query Frame = 3
Query:   12 RTPLDWETRVKILLGTARGVAHIHSMGGPKFTHGNIKASNVLINQDLDGCISDFGLTPL-----MNVPATPSRSAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAPLQSPTRDDMVDLPRWVQSVVREEWTAEVFDVEL 425
            R  LDW TR KI LG A+G+  +H     K  H +IKASNVL+++DL+  ISDFGL  L      ++    + + GY APE       + K+DVYSFGV+ LE+++GK+       +D V L  W   +       E+ D  L
Sbjct:  771 RLKLDWSTRKKIFLGIAKGLTFLHEESRIKIVHRDIKASNVLLDKDLNAKISDFGLAKLNDDGNTHISTRIAGTIGYMAPEYAMRGYLTEKADVYSFGVVALEIVSGKSNTNFRPTEDFVYLLDWAYVLQERGSLLELVDPTL 913          
BLAST of CX287617 vs. ExPASy Swiss-Prot
Match: Y1124_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g12460 OS=Arabidopsis thaliana GN=At1g12460 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.602e-19
Identity = 49/146 (33.56%), Postives = 91/146 (62.33%), Query Frame = 3
Query:    9 GRTPLDWETRVKILLGTARGVAHIHSMGGPKFTHGNIKASNVLINQDLDGCISDFGL---TPLMNVPATPSR---SAGYRAPEVI-ETRKHSHKSDVYSFGVLLLEMLTGKAPLQSPTRDDMVDLPRWVQSVVREEWTAEVFDVEL 425
            G T L+W  R +I LGTA+ ++ +H+   P   H N+K++N+L+++  +  +SD+GL    P+M+      +   + GY APE+  ++ + S K DVYS+GV+LLE++TG+ P++SP+ + ++ L  +V+ ++     ++ FD  L
Sbjct:  692 GNTDLNWHRRFQIALGTAKALSFLHNDCKPAILHLNVKSTNILLDERYEAKLSDYGLEKFLPVMDSFGLTKKFHNAVGYIAPELAQQSLRASEKCDVYSYGVVLLELVTGRKPVESPSENQVLILRDYVRDLLETGSASDCFDRRL 837          
BLAST of CX287617 vs. ExPASy Swiss-Prot
Match: SRF6_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana GN=SRF6 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.602e-19
Identity = 48/119 (40.34%), Postives = 70/119 (58.82%), Query Frame = 3
Query:   21 LDWETRVKILLGTARGVAHIHSMGGPKFTHGNIKASNVLINQDLDGCISDFGLTPLMNVP--ATPSRSAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAPLQSPTRDDMVDLPRW 371
            L W +RVKI LGTAR + ++H +  P     NIK++N+L++ +L+  +SD GL   +            GY APEV  + ++S KSD+YSFGV++LE+LTG+ P  S        L RW
Sbjct:  513 LVWNSRVKIALGTARALEYLHEVCSPSIVDKNIKSANILLDSELNPHLSDSGLASFLPTANELLNQTDEGYSAPEVSMSGQYSLKSDIYSFGVVMLELLTGRKPFDSTRSRSEQSLVRW 631          
BLAST of CX287617 vs. ExPASy Swiss-Prot
Match: NORK_PEA (Nodulation receptor kinase OS=Pisum sativum GN=NORK PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.602e-19
Identity = 50/141 (35.46%), Postives = 78/141 (55.32%), Query Frame = 3
Query:   12 RTPLDWETRVKILLGTARGVAHIHSMGGPKFTHGNIKASNVLINQDLDGCISDFGLTPL------MNVPATPSRSAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAPLQSPTRDDMVDLPRWVQSVVREEWTAEVFD 416
            R  LDW TR+ I LG ARG+A++H+  G    H ++K+SN+L++  +   ++DFG +          V      +AGY  PE  +T++ S KSDV+SFGV+LLE+++G+ PL          L  W +  +R     E+ D
Sbjct:  687 RKILDWPTRLSIALGAARGLAYLHTFPGRSVIHRDVKSSNILLDHSMCAKVADFGFSKYAPQEGDSYVSLEVRGTAGYLDPEYYKTQQLSEKSDVFSFGVVLLEIVSGREPLNIKRPRVEWSLVEWAKPYIRASKVDEIVD 827          
BLAST of CX287617 vs. ExPASy Swiss-Prot
Match: Y5487_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g48740 OS=Arabidopsis thaliana GN=At5g48740 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.928e-19
Identity = 44/128 (34.38%), Postives = 77/128 (60.16%), Query Frame = 3
Query:   12 RTPLDWETRVKILLGTARGVAHIHSMGGPKFTHGNIKASNVLINQDLDGCISDFGLT------PLMNVPATPSRSAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAPLQSPTRDDMVDLPRWVQ 377
            R  L+W +R+K+ +  A+G+ ++H+   P+  H ++K+SN+L+++D++  +SDFGL+         ++      +AGY  PE   T + + KSDVYSFGV+LLE++ G+ PL      D  +L  W +
Sbjct:  698 RHSLNWVSRLKVAVDAAKGLDYLHNGSEPRIIHRDVKSSNILLDKDMNAKVSDFGLSKQFTKADASHITTVVKGTAGYLDPEYYSTLQLTEKSDVYSFGVVLLELICGREPLSHSGSPDSFNLVLWAR 825          
BLAST of CX287617 vs. ExPASy Swiss-Prot
Match: RLK5_ARATH (Receptor-like protein kinase 5 OS=Arabidopsis thaliana GN=RLK5 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.928e-19
Identity = 52/148 (35.14%), Postives = 83/148 (56.08%), Query Frame = 3
Query:    6 RGRTPLDWETRVKILLGTARGVAHIHSMGGPKFTHGNIKASNVLINQDLDGCISDFGLTPL--MNVPATPSR------SAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAPLQSPTRDDMVDLPRWVQSVVREEWTAEVFDVEL 425
            +G   L W  R++I L  A G++++H    P   H ++K+SN+L++ D    ++DFG+  +  M+   TP        S GY APE + T + + KSD+YSFGV+LLE++TGK P  S   D   D+ +WV + + +     V D +L
Sbjct:  783 KGGVVLGWPERLRIALDAAEGLSYLHHDCVPPIVHRDVKSSNILLDSDYGAKVADFGIAKVGQMSGSKTPEAMSGIAGSCGYIAPEYVYTLRVNEKSDIYSFGVVLLELVTGKQPTDSELGDK--DMAKWVCTALDKCGLEPVIDPKL 928          
BLAST of CX287617 vs. ExPASy Swiss-Prot
Match: GSO1_ARATH (LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.928e-19
Identity = 49/128 (38.28%), Postives = 77/128 (60.16%), Query Frame = 3
Query:   21 LDWETRVKILLGTARGVAHIHSMGGPKFTHGNIKASNVLINQDLDGCISDFGLTPLMNVPATPSR--------SAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAPLQSPTRDDMVDLPRWVQS 380
            LDWE R++I +G A+GV ++H    P   H +IK+SNVL++ +++  + DFGL  ++      +         S GY APE   + K + KSDVYS G++L+E++TGK P  S    +M D+ RWV++
Sbjct: 1053 LDWEARLRIAVGLAQGVEYLHHDCVPPIVHRDIKSSNVLLDSNMEAHLGDFGLAKVLTENCDTNTDSNTWFACSYGYIAPEYAYSLKATEKSDVYSMGIVLMEIVTGKMPTDSVFGAEM-DMVRWVET 1179          
BLAST of CX287617 vs. ExPASy Swiss-Prot
Match: PEPR2_ARATH (Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.297e-18
Identity = 50/131 (38.17%), Postives = 77/131 (58.78%), Query Frame = 3
Query:    6 RGRTPLDWETRVKILLGTARGVAHIHSMGGPKFTHGNIKASNVLINQDLDGCISDFGLTPLMN----VPATPSRSAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAPLQSPTRDDMVDLPRWVQSVV 386
            +G   LDW  R  I LG + G+A++H    P   H +IK  N+L++ D++  I DFGL  +++      AT + + GY APE       S +SDVYS+GV+LLE++TGK  L     +D +++  WV+SV+
Sbjct:  885 QGEAVLDWSARFNIALGISHGLAYLHHDCHPPIIHRDIKPENILMDSDMEPHIGDFGLARILDDSTVSTATVTGTTGYIAPENAYKTVRSKESDVYSYGVVLLELVTGKRALDRSFPED-INIVSWVRSVL 1014          
BLAST of CX287617 vs. ExPASy Swiss-Prot
Match: HSL1_ARATH (Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.212e-18
Identity = 49/142 (34.51%), Postives = 81/142 (57.04%), Query Frame = 3
Query:   21 LDWETRVKILLGTARGVAHIHSMGGPKFTHGNIKASNVLINQDLDGCISDFGLTPLMNVPATPSR-------SAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAPLQSPTRDDMVDLPRWVQSVVREEWTAEVFDVEL 425
            L W+TR KI+L  A G++++H    P   H +IK++N+LI+ D    ++DFG+   +++     +       S GY APE   T + + KSD+YSFGV++LE++T K P+     +   DL +WV S + ++    V D +L
Sbjct:  784 LGWQTRFKIILDAAEGLSYLHHDSVPPIVHRDIKSNNILIDGDYGARVADFGVAKAVDLTGKAPKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILEIVTRKRPVDPELGEK--DLVKWVCSTLDQKGIEHVIDPKL 923          
The following BLAST results are available for this feature:
BLAST of CX287617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 246
Match NameE-valueIdentityDescription
Y5977_ARATH5.820e-1939.45Probable leucine-rich repeat receptor-like protein... [more]
Y1765_ARATH5.820e-1938.46Probable LRR receptor-like serine/threonine-protei... [more]
Y1124_ARATH7.602e-1933.56Probable LRR receptor-like serine/threonine-protei... [more]
SRF6_ARATH7.602e-1940.34Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsi... [more]
NORK_PEA7.602e-1935.46Nodulation receptor kinase OS=Pisum sativum GN=NOR... [more]
Y5487_ARATH9.928e-1934.38Probable LRR receptor-like serine/threonine-protei... [more]
RLK5_ARATH9.928e-1935.14Receptor-like protein kinase 5 OS=Arabidopsis thal... [more]
GSO1_ARATH9.928e-1938.28LRR receptor-like serine/threonine-protein kinase ... [more]
PEPR2_ARATH1.297e-1838.17Leucine-rich repeat receptor-like protein kinase P... [more]
HSL1_ARATH2.212e-1834.51Receptor-like protein kinase HSL1 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionC01011E04SK Veg1 Citrus clementina cDNA clone C01011E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287617 ID=CX287617; Name=CX287617; organism=Citrus clementina; type=EST; length=426bp
CGGCACGAGGTAGAACTCCACTGGACTGGGAGACAAGAGTAAAGATATTG
CTTGGGACAGCAAGGGGCGTTGCCCACATTCATTCTATGGGTGGTCCAAA
ATTCACTCATGGAAATATTAAAGCCTCAAATGTCCTCATCAACCAAGATC
TTGATGGATGCATCTCTGATTTTGGACTGACCCCTCTTATGAATGTCCCT
GCCACACCATCTCGGAGTGCAGGCTACCGTGCTCCTGAGGTGATTGAAAC
CCGTAAGCACAGTCATAAATCAGACGTGTATAGTTTTGGTGTCCTTCTCC
TTGAGATGCTGACTGGGAAAGCTCCACTCCAGTCACCAACGCGTGATGAT
ATGGTTGATCTCCCTAGGTGGGTTCAGTCTGTTGTTCGGGAAGAATGGAC
AGCTGAGGTTTTTGATGTCGAGTTGA
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