CX287637

Overview
NameCX287637
Unique NameCX287637
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length429
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287637 vs. ExPASy Swiss-Prot
Match: CBP1_ORYSJ (Serine carboxypeptidase 1 OS=Oryza sativa subsp. japonica GN=CBP1 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.493e-25
Identity = 53/96 (55.21%), Postives = 63/96 (65.62%), Query Frame = 1
Query:  142 AASYSTVKFLPGFQGPLPFELETGYVGVGESGDAQLFYYFVKSEKNPREDPLLLWLTGGPGCSAFSGLAYEIGPINFNVVEYNGSLPTLHLNPYSW 429
            A + + VK +PGF G LP +   GYV V E     LFYY V+SE++P +DPL+LWL GGPGCS+F G  YE GP NF       SLP LHLNPYSW
Sbjct:   37 APASAVVKSVPGFDGALPSKHYAGYVTVEEQHGRNLFYYLVESERDPAKDPLVLWLNGGPGCSSFDGFVYEHGPFNFESGGSAKSLPKLHLNPYSW 132          
BLAST of CX287637 vs. ExPASy Swiss-Prot
Match: CBP1_HORVU (Serine carboxypeptidase 1 OS=Hordeum vulgare GN=CBP1 PE=1 SV=4)

HSP 1 Score: 106.686 bits (265), Expect = 4.112e-23
Identity = 49/87 (56.32%), Postives = 58/87 (66.67%), Query Frame = 1
Query:  169 LPGFQGPLPFELETGYVGVGESGDAQLFYYFVKSEKNPREDPLLLWLTGGPGCSAFSGLAYEIGPINFNVVEYNGSLPTLHLNPYSW 429
            LPGF G LP +   GYV V E     LFYY V+SE++P +DP++LWL GGPGCS+F G  YE GP NF       SLP LHLNPY+W
Sbjct:   40 LPGFDGALPSKHYAGYVTVDEGHGRNLFYYVVESERDPGKDPVVLWLNGGPGCSSFDGFVYEHGPFNFESGGSVKSLPKLHLNPYAW 126          
BLAST of CX287637 vs. ExPASy Swiss-Prot
Match: SCP21_ARATH (Serine carboxypeptidase-like 21 OS=Arabidopsis thaliana GN=SCPL21 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.120e-20
Identity = 45/87 (51.72%), Postives = 56/87 (64.37%), Query Frame = 1
Query:  169 LPGFQGPLPFELETGYVGVGESGDAQLFYYFVKSEKNPREDPLLLWLTGGPGCSAFSGLAYEIGPINFNVVEYNGSLPTLHLNPYSW 429
            LPGF G  P +   GYV + +  +  L+YYFV+SE+N   DP++LWL GGPGCS+  G  YE GP NF   + N  L  LHLNPYSW
Sbjct:   33 LPGFNGTFPSKHYAGYVAIDKHRNKNLWYYFVESERNASVDPVVLWLNGGPGCSSMDGFVYEHGPFNFEPKKKNSHL--LHLNPYSW 117          
BLAST of CX287637 vs. ExPASy Swiss-Prot
Match: SCP34_ARATH (Serine carboxypeptidase-like 34 OS=Arabidopsis thaliana GN=SCPL34 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 4.868e-16
Identity = 45/91 (49.45%), Postives = 55/91 (60.44%), Query Frame = 1
Query:  160 VKFLPGFQGPLPFELETGYVGVGESGDAQLFYYFVKSEKNPREDPLLLWLTGGPGCSAFS-GLAYEIGPINFNVVEYNGSLPTLHLNPYSW 429
            VK LPG Q P+ F    GYV V E+    LFY+F ++ +NP + P+LLWL GGPGCS+   G A E+GP        N S P L LNPYSW
Sbjct:   52 VKELPG-QPPVKFRQYAGYVTVNETHGRALFYWFFEATQNPSKKPVLLWLNGGPGCSSIGFGAAEELGPF----FPQNSSQPKLKLNPYSW 137          
BLAST of CX287637 vs. ExPASy Swiss-Prot
Match: YUA6_CAEEL (Uncharacterized serine carboxypeptidase F13S12.6 OS=Caenorhabditis elegans GN=F13D12.6 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 7.029e-15
Identity = 40/78 (51.28%), Postives = 49/78 (62.82%), Query Frame = 1
Query:  196 FELETGYVGVGESGDAQLFYYFVKSEKNPREDPLLLWLTGGPGCSAFSGLAYEIGPINFNVVEYNGSLPTLHLNPYSW 429
            F+  +GY  VG   +  L Y+FV+S+ NP  DP+LLWLTGGPGCS  S L  E GP N N    +G+  TL  NPYSW
Sbjct:   35 FKQYSGYYNVGTKKNHMLHYWFVESQSNPSTDPVLLWLTGGPGCSGLSALLTEWGPWNVNT---DGA--TLRTNPYSW 107          
BLAST of CX287637 vs. ExPASy Swiss-Prot
Match: PPGB_BOVIN (Lysosomal protective protein OS=Bos taurus GN=CTSA PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.556e-14
Identity = 39/90 (43.33%), Postives = 56/90 (62.22%), Query Frame = 1
Query:  160 VKFLPGFQGPLPFELETGYVGVGESGDAQLFYYFVKSEKNPREDPLLLWLTGGPGCSAFSGLAYEIGPINFNVVEYNGSLPTLHLNPYSW 429
            ++FLPG      F   +GY+    SG  +L Y+FV+S+K+P+  P++LWL GGPGCS+  GL  E GP    +++ +G   TL  NPYSW
Sbjct:   34 IRFLPGLAKQPSFRQYSGYLK--GSGSKRLHYWFVESQKDPKSSPVVLWLNGGPGCSSLDGLLTEHGPF---LIQPDG--VTLEYNPYSW 116          
BLAST of CX287637 vs. ExPASy Swiss-Prot
Match: SCP39_ARATH (Serine carboxypeptidase-like 39 OS=Arabidopsis thaliana GN=SCPL39 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.951e-14
Identity = 40/90 (44.44%), Postives = 51/90 (56.67%), Query Frame = 1
Query:  160 VKFLPGFQGPLPFELETGYVGVGESGDAQLFYYFVKSEKNPREDPLLLWLTGGPGCSAFSGLAYEIGPINFNVVEYNGSLPTLHLNPYSW 429
            ++ LPG Q  + F    GYV V ES    L+YYFV++ K  +  PL+LWL GGPGCS+  G   E+GP         G   TL+ NPYSW
Sbjct:   80 IENLPG-QPSVSFRQYGGYVTVNESAGRSLYYYFVEATKTKKSLPLVLWLNGGPGCSSLYGAFQELGPFRI-----YGDGKTLYTNPYSW 163          
BLAST of CX287637 vs. ExPASy Swiss-Prot
Match: SCP53_ARATH (Putative serine carboxypeptidase-like 53 OS=Arabidopsis thaliana GN=SCPL53 PE=5 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.731e-13
Identity = 41/90 (45.56%), Postives = 52/90 (57.78%), Query Frame = 1
Query:  160 VKFLPGFQGPLPFELETGYVGVGESGDAQLFYYFVKSEKNPREDPLLLWLTGGPGCSAFSGLAYEIGPINFNVVEYNGSLPTLHLNPYSW 429
            ++ LPG Q  + F+   GYV V ES    L+YYFV++       PL+LWL GGPGCS+  G   E+GP  F V   N    TL+ NPYSW
Sbjct:   80 IENLPG-QPSVNFKQYGGYVTVNESAGRSLYYYFVEATNTKNSSPLVLWLNGGPGCSSLYGAFQELGP--FRVHSDN---KTLYTNPYSW 163          
BLAST of CX287637 vs. ExPASy Swiss-Prot
Match: YPP3_CAEEL (Uncharacterized serine carboxypeptidase F32A5.3 OS=Caenorhabditis elegans GN=F32A5.3 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.038e-13
Identity = 36/90 (40.00%), Postives = 51/90 (56.67%), Query Frame = 1
Query:  160 VKFLPGFQGPLPFELETGYVGVGESGDAQLFYYFVKSEKNPREDPLLLWLTGGPGCSAFSGLAYEIGPINFNVVEYNGSLPTLHLNPYSW 429
            ++ LPG      F+  +GYV    +G  ++ Y   +S  NP  DPLL+W  GGPGCS+  GL  E+GP     V ++G   TL+ NPY+W
Sbjct:   24 IQNLPGLLFKANFKSYSGYVDANANGTWKMHYMLTESRSNPDTDPLLVWFNGGPGCSSLGGLFEELGPF---YVNFDGQ--TLYENPYAW 108          
BLAST of CX287637 vs. ExPASy Swiss-Prot
Match: SCP40_ARATH (Serine carboxypeptidase-like 40 OS=Arabidopsis thaliana GN=SCPL40 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 8.593e-13
Identity = 41/91 (45.05%), Postives = 53/91 (58.24%), Query Frame = 1
Query:  160 VKFLPGFQGPLPFELETGYVGVGESGDAQLFYYFVKSEKNPREDPLLLWLTGGPGCSAFS-GLAYEIGPINFNVVEYNGSLPTLHLNPYSW 429
            ++ LPG Q P+ F+   GYV V ES     FYYFV++ K+    PLLLWL GGPGCS+ + G   E+GP     V  +G   TL  N Y+W
Sbjct:   82 IRRLPG-QPPVSFDQYGGYVTVNESAGRSFFYYFVEASKSKDSSPLLLWLNGGPGCSSLAYGALQELGPFR---VHSDGK--TLFRNRYAW 166          
The following BLAST results are available for this feature:
BLAST of CX287637 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
CBP1_ORYSJ7.493e-2555.21Serine carboxypeptidase 1 OS=Oryza sativa subsp. j... [more]
CBP1_HORVU4.112e-2356.32Serine carboxypeptidase 1 OS=Hordeum vulgare GN=CB... [more]
SCP21_ARATH1.120e-2051.72Serine carboxypeptidase-like 21 OS=Arabidopsis tha... [more]
SCP34_ARATH4.868e-1649.45Serine carboxypeptidase-like 34 OS=Arabidopsis tha... [more]
YUA6_CAEEL7.029e-1551.28Uncharacterized serine carboxypeptidase F13S12.6 O... [more]
PPGB_BOVIN4.556e-1443.33Lysosomal protective protein OS=Bos taurus GN=CTSA... [more]
SCP39_ARATH5.951e-1444.44Serine carboxypeptidase-like 39 OS=Arabidopsis tha... [more]
SCP53_ARATH1.731e-1345.56Putative serine carboxypeptidase-like 53 OS=Arabid... [more]
YPP3_CAEEL5.038e-1340.00Uncharacterized serine carboxypeptidase F32A5.3 OS... [more]
SCP40_ARATH8.593e-1345.05Serine carboxypeptidase-like 40 OS=Arabidopsis tha... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01011G01SK Veg1 Citrus clementina cDNA clone C01011G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287637 ID=CX287637; Name=CX287637; organism=Citrus clementina; type=EST; length=429bp
AGATTGTTCGCTAGTTGTTTCTCAAAGAAACTGGTTGGTTAAGACTTAAG
AGGCTGGAAAAGCCGAAAACAAACGCCAATGGACAAGCTTTGTTTTCCTC
TTCTTCTTCTTCTTCTTCTTGTACAGCTTTGCATGCAGCTTGCAGCTTCT
TACTCAACTGTTAAATTTCTTCCGGGATTCCAGGGCCCCCTCCCCTTTGA
ACTTGAAACTGGGTATGTAGGAGTAGGTGAGTCGGGGGACGCACAGCTCT
TCTATTACTTTGTGAAGTCGGAGAAAAATCCAAGAGAGGACCCTCTCTTG
CTTTGGCTTACTGGTGGCCCTGGCTGCTCTGCCTTCTCAGGTCTTGCTTA
TGAAATTGGTCCAATAAATTTCAACGTAGTGGAGTACAACGGGAGCTTGC
CTACTTTGCACTTGAATCCCTACTCATGG
back to top