CX287640

Overview
NameCX287640
Unique NameCX287640
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length410
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287640 vs. ExPASy Swiss-Prot
Match: RBS2_THIFE (Ribulose bisphosphate carboxylase small chain 2 OS=Thiobacillus ferrooxidans GN=cbbS2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.892e-12
Identity = 32/76 (42.11%), Postives = 45/76 (59.21%), Query Frame = 1
Query:  172 KFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKE 399
            KFETLSYLP L+ + + ++++Y++  GW P +E            H+ P    G YW MWKLPM+G TD   +LKE
Sbjct:   18 KFETLSYLPALTADEIRQQVAYIVSKGWNPAVE------------HTEPENAFGNYWYMWKLPMFGETDVDTILKE 81          
BLAST of CX287640 vs. ExPASy Swiss-Prot
Match: RBS_PSEHY (Ribulose bisphosphate carboxylase small chain OS=Pseudomonas hydrogenothermophila GN=cbbS PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.528e-11
Identity = 31/78 (39.74%), Postives = 43/78 (55.13%), Query Frame = 1
Query:  169 KKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEV 402
            K+FET SYLP +S E + K+I Y++  GW P +E            H  P      YW MWKLPM+G TD  +++ E+
Sbjct:   24 KRFETFSYLPQMSAEEIRKQIEYIVSKGWNPAIE------------HCEPENAILHYWYMWKLPMFGETDVDKIIAEI 89          
BLAST of CX287640 vs. ExPASy Swiss-Prot
Match: RBS_ANASP (Ribulose bisphosphate carboxylase small chain OS=Anabaena sp. (strain PCC 7120) GN=cbbS PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.832e-11
Identity = 32/78 (41.03%), Postives = 47/78 (60.26%), Query Frame = 1
Query:  169 KKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEV 402
            +++ETLSYLPPL+D  + K++ Y+L  G+IP +EF            S P      YWT+WKLP++G   + +VL EV
Sbjct:    8 RRYETLSYLPPLTDVQIEKQVQYILSQGYIPAVEF---------NEVSEP---TELYWTLWKLPLFGAKTSREVLAEV 73          
The following BLAST results are available for this feature:
BLAST of CX287640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
RBS2_THIFE8.892e-1242.11Ribulose bisphosphate carboxylase small chain 2 OS... [more]
RBS_PSEHY7.528e-1139.74Ribulose bisphosphate carboxylase small chain OS=P... [more]
RBS_ANASP9.832e-1141.03Ribulose bisphosphate carboxylase small chain OS=A... [more]

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Properties
Property NameValue
Genbank descriptionC01011G04SK Veg1 Citrus clementina cDNA clone C01011G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287640 ID=CX287640; Name=CX287640; organism=Citrus clementina; type=EST; length=410bp
TCGGCACGAGGCGCCAGCCTTGCTCAGGCCAGCATGGTCGCCCCCTTCAC
CGGCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAGAAGACCAACAATG
ACATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATGAAGGTG
TGGCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCC
ACTGTCCGATGAAGCTTTGCTCAAGGAAATCAGTTACCTTCTCCGCTCCG
GCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTACCGT
GAGCACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACAATGTG
GAAGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGG
TTGGGGAGGT
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