CX287640

Overview
NameCX287640
Unique NameCX287640
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length410
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287640 vs. ExPASy Swiss-Prot
Match: RBS_GLYTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tabacina GN=RBCS PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 9.075e-57
Identity = 102/129 (79.07%), Postives = 110/129 (85.27%), Query Frame = 1
Query:   22 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGE 408
            A A  VAPFTGLKS + FP T+KTNNDI SIASNGGRVQCM+VWP TG KKFETLSYLP L D  L KE+ YLLR GWIPCLEFELE G+VYREHH SPGYYDGRYWTMWKLPM+GCTDA+QVLKE+ E
Sbjct:   17 AGAGTVAPFTGLKSMAGFP-TRKTNNDIASIASNGGRVQCMQVWPTTGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDASQVLKELQE 144          
BLAST of CX287640 vs. ExPASy Swiss-Prot
Match: RBS2_MESCR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-2 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 1.185e-56
Identity = 100/129 (77.52%), Postives = 115/129 (89.15%), Query Frame = 1
Query:   22 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGE 408
            AQASMVAPFTGLKS SAFP TKK+N DITSIASNGGRVQCM+VWPP G KKFETLSYLPPLS+E+L+KE+ YLL +GW+PCLEFE   G+VYREH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E
Sbjct:   17 AQASMVAPFTGLKSVSAFPVTKKSN-DITSIASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEE 144          
BLAST of CX287640 vs. ExPASy Swiss-Prot
Match: RBS1_SOYBN (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Glycine max GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 1.185e-56
Identity = 102/129 (79.07%), Postives = 111/129 (86.05%), Query Frame = 1
Query:   22 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGE 408
            A A MVAPFTGLKS + FP T+KTNNDITSIASNGGRVQCM+VWPP G KKFETLSYLP L D  L KE+ YLLR GWIPCLEFELE G+VYREH+ SP YYDGRYWTMWKLPM+GCTDA+QVLKE+ E
Sbjct:   17 AGAGMVAPFTGLKSMAGFP-TRKTNNDITSIASNGGRVQCMQVWPPIGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPXYYDGRYWTMWKLPMFGCTDASQVLKELQE 144          
BLAST of CX287640 vs. ExPASy Swiss-Prot
Match: RBS_TOBAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana tabacum GN=RBCS PE=1 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 2.640e-56
Identity = 98/135 (72.59%), Postives = 117/135 (86.67%), Query Frame = 1
Query:    4 ARGASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGE 408
            A  +++AQA+MVAPFTGLKS+++FP ++K N DITSIASNGGRVQCM+VWPP   KK+ETLSYLP LS E LL E+ YLL++GW+PCLEFE E G+VYRE++ SPGYYDGRYWTMWKLPM+GCTDATQVL EV E
Sbjct:   12 ATRSNVAQANMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEE 146          
BLAST of CX287640 vs. ExPASy Swiss-Prot
Match: RBS1_PETHY (Ribulose bisphosphate carboxylase small chain SSU8, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 2.640e-56
Identity = 100/135 (74.07%), Postives = 114/135 (84.44%), Query Frame = 1
Query:    4 ARGASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGE 408
            A   ++AQASMVAPF GLKS+ +FP + K N DITSIASNGGRVQCM+VWPP G KK+ETLSYLP L+DE LLKEI YLL  GW+PCLEFE E G+VYRE+H+SP YYDGRYWTMWKLPM+GCTDATQVL E+ E
Sbjct:   12 ATRTNVAQASMVAPFNGLKSAVSFPVSSKQNLDITSIASNGGRVQCMQVWPPYGKKKYETLSYLPDLTDEQLLKEIEYLLNKGWVPCLEFETEHGFVYREYHASPRYYDGRYWTMWKLPMFGCTDATQVLGELQE 146          
BLAST of CX287640 vs. ExPASy Swiss-Prot
Match: RBS1_NICSY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana sylvestris GN=RBCS PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 2.640e-56
Identity = 98/135 (72.59%), Postives = 117/135 (86.67%), Query Frame = 1
Query:    4 ARGASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGE 408
            A  +++AQA+MVAPFTGLKS+++FP ++K N DITSIASNGGRVQCM+VWPP   KK+ETLSYLP LS E LL E+ YLL++GW+PCLEFE E G+VYRE++ SPGYYDGRYWTMWKLPM+GCTDATQVL EV E
Sbjct:   12 ATRSNVAQANMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEE 146          
BLAST of CX287640 vs. ExPASy Swiss-Prot
Match: RBS3_MESCR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 3.448e-56
Identity = 98/135 (72.59%), Postives = 116/135 (85.93%), Query Frame = 1
Query:    4 ARGASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGE 408
            A   + AQA+MVAPF GLKS SAFP T+K NNDITS+ASNGGRVQCM+VWPP G KKFETLSYLPPLS+E+L+KE+ YLL +GW+PCLEFE   G+VYREH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E
Sbjct:   14 AAATTTAQANMVAPFNGLKSVSAFPVTRK-NNDITSVASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEE 147          
BLAST of CX287640 vs. ExPASy Swiss-Prot
Match: RBS1_SOLTU (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum tuberosum GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 3.448e-56
Identity = 95/126 (75.40%), Postives = 112/126 (88.89%), Query Frame = 1
Query:   31 SMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGE 408
            SM+APFTGLKS++ FP ++K N DITSIASNGGRV+CM+VWPP  +KK+ETLSYLP L+DE LLKE+ YLL++GW+PCLEFE E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDATQVL EV E
Sbjct:   22 SMIAPFTGLKSAATFPVSRKQNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLTDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQE 147          
BLAST of CX287640 vs. ExPASy Swiss-Prot
Match: RBS_CUCSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Cucumis sativus GN=RBCS PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 4.504e-56
Identity = 95/136 (69.85%), Postives = 117/136 (86.03%), Query Frame = 1
Query:    1 SARGASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGE 408
            S   AS AQASMVAPFTGLKSS+ FP T+K N DIT++ASN G+VQCMKVWPP GL+KFETLSYLP +S+E L KE  YLLR+GW+PC+EF++  G+VYRE+H SPG+YDGRYWTMWKLPM+GCTD++QV++E+ E
Sbjct:   13 SVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNAGKVQCMKVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGFYDGRYWTMWKLPMFGCTDSSQVIQEIEE 148          
BLAST of CX287640 vs. ExPASy Swiss-Prot
Match: RBS6_MESCR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-6 PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 5.882e-56
Identity = 94/129 (72.87%), Postives = 115/129 (89.15%), Query Frame = 1
Query:   22 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGE 408
            AQASMVAPFTGLKS SAFP T+K++ND++++ SNGG+VQCM+VWPP G KKFETLSYLPPLS+E+LLKE+ YLL +GW+PCLEFE   G+VYREH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E
Sbjct:   22 AQASMVAPFTGLKSVSAFPVTRKSSNDLSTVPSNGGKVQCMQVWPPLGKKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEE 150          
The following BLAST results are available for this feature:
BLAST of CX287640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
RBS_GLYTA9.075e-5779.07Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_MESCR1.185e-5677.52Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS1_SOYBN1.185e-5679.07Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_TOBAC2.640e-5672.59Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_PETHY2.640e-5674.07Ribulose bisphosphate carboxylase small chain SSU8... [more]
RBS1_NICSY2.640e-5672.59Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_MESCR3.448e-5672.59Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS1_SOLTU3.448e-5675.40Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_CUCSA4.504e-5669.85Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS6_MESCR5.882e-5672.87Ribulose bisphosphate carboxylase small chain 6, c... [more]

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Properties
Property NameValue
Genbank descriptionC01011G04SK Veg1 Citrus clementina cDNA clone C01011G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287640 ID=CX287640; Name=CX287640; organism=Citrus clementina; type=EST; length=410bp
TCGGCACGAGGCGCCAGCCTTGCTCAGGCCAGCATGGTCGCCCCCTTCAC
CGGCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAGAAGACCAACAATG
ACATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATGAAGGTG
TGGCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCC
ACTGTCCGATGAAGCTTTGCTCAAGGAAATCAGTTACCTTCTCCGCTCCG
GCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTACCGT
GAGCACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACAATGTG
GAAGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGG
TTGGGGAGGT
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