CX287640
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX287640 vs. ExPASy Swiss-Prot
Match: RBS1_LEMGI (Ribulose bisphosphate carboxylase small chain SSU1, chloroplastic OS=Lemna gibba GN=SSU1 PE=2 SV=2) HSP 1 Score: 198.749 bits (504), Expect = 7.441e-51 Identity = 89/129 (68.99%), Postives = 109/129 (84.50%), Query Frame = 1 Query: 22 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGE 408 AQ +MV F G +SS AFPAT+K NND++++ S+GGRV CM+VWPP GLKKFETLSYLPPLS E L KE+ YLLR+ W+PC+EF E G+VYRE+++SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E Sbjct: 14 AQTNMVGAFNGCRSSVAFPATRKANNDLSTLPSSGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENNASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEE 141
BLAST of CX287640 vs. ExPASy Swiss-Prot
Match: RBS4_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40B, chloroplastic OS=Lemna gibba GN=SSU40B PE=3 SV=1) HSP 1 Score: 197.978 bits (502), Expect = 1.269e-50 Identity = 91/132 (68.94%), Postives = 109/132 (82.58%), Query Frame = 1 Query: 13 ASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGE 408 A AQ +MV PF +SS FPAT+K NND++++ SNGGRV CM+VWPP GLKKFETLSYLPPLS E L KE+ YLLR+ W+PC+EF E G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E Sbjct: 16 AGPAQTNMV-PFNACRSSVPFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEE 145
BLAST of CX287640 vs. ExPASy Swiss-Prot
Match: RBS3_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40A, chloroplastic OS=Lemna gibba GN=SSU40A PE=3 SV=1) HSP 1 Score: 196.052 bits (497), Expect = 4.823e-50 Identity = 90/132 (68.18%), Postives = 109/132 (82.58%), Query Frame = 1 Query: 13 ASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGE 408 A AQ+SMV PF +SS FPAT+K NN+++++ NGGRV CM+VWPP GLKKFETLSYLPPLS E L KE+ YLLR+ W+PC+EF E G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E Sbjct: 16 AGPAQSSMV-PFNACRSSVPFPATRKANNNLSTLPGNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEE 145
BLAST of CX287640 vs. ExPASy Swiss-Prot
Match: RBS_ZANAE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2 SV=1) HSP 1 Score: 189.119 bits (479), Expect = 5.896e-48 Identity = 88/131 (67.18%), Postives = 109/131 (83.21%), Query Frame = 1 Query: 16 SLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGE 408 S AQ++MV PF GL SS+AFP T+K D + + SNG RV+CM+VWPP G KKFETLSYLPPL+ E L +E+ YL+R+GWIPC+EF + G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTD++QVLKEV E Sbjct: 16 SPAQSNMVVPFAGLHSSAAFPVTRKFA-DSSKLPSNGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLGQEVDYLIRNGWIPCIEF-CKVGFVYREYHNSPGYYDGRYWTMWKLPMFGCTDSSQVLKEVDE 144
BLAST of CX287640 vs. ExPASy Swiss-Prot
Match: RBS_HORVU (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hordeum vulgare PE=2 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 1.006e-47 Identity = 84/129 (65.12%), Postives = 108/129 (83.72%), Query Frame = 1 Query: 22 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGE 408 + A+ VAPF GLKS++ P ++++N S+ SNGGR++CM+VWP G+KKFETLSYLPPLS EALLK++ YL+RS W+PCLEF + G+++REH++SPGYYDGRYWTMWKLPM+GCTDATQVL EV E Sbjct: 8 SSATSVAPFQGLKSTAGLPVSRRSNASSASV-SNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVLNEVEE 134
BLAST of CX287640 vs. ExPASy Swiss-Prot
Match: RBS2_WHEAT (Ribulose bisphosphate carboxylase small chain PW9, chloroplastic OS=Triticum aestivum PE=3 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 1.715e-47 Identity = 85/129 (65.89%), Postives = 106/129 (82.17%), Query Frame = 1 Query: 22 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGE 408 + A+ VAPF GLKS++ P + ++ + S SNGGR++CM+VWP G+KKFETLSYLPPLS EALLK++ YL+RS W+PCLEF + G+V+REH+SSPGYYDGRYWTMWKLPM+GCTDATQVL EV E Sbjct: 8 SSATTVAPFQGLKSTAGLPISCRSGSTGLSSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEE 135
BLAST of CX287640 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSJ (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS PE=1 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 1.715e-47 Identity = 85/129 (65.89%), Postives = 104/129 (80.62%), Query Frame = 1 Query: 22 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGE 408 + A+ VAPF GLKS++ P +++ N SNGGR++CM+VWP G+KKFETLSYLPPL+ E LLK+I YLLRS W+PCLEF + G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDATQVLKE+ E Sbjct: 8 SSATTVAPFQGLKSTAGMPVARRSGNSSFGNVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEE 135
BLAST of CX287640 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. indica GN=RBCS PE=2 SV=2) HSP 1 Score: 187.578 bits (475), Expect = 1.715e-47 Identity = 85/129 (65.89%), Postives = 104/129 (80.62%), Query Frame = 1 Query: 22 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGE 408 + A+ VAPF GLKS++ P +++ N SNGGR++CM+VWP G+KKFETLSYLPPL+ E LLK+I YLLRS W+PCLEF + G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDATQVLKE+ E Sbjct: 8 SSATTVAPFQGLKSTAGMPVARRSGNSSFGNVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEE 135
BLAST of CX287640 vs. ExPASy Swiss-Prot
Match: RBS2_ORYSJ (Ribulose bisphosphate carboxylase small chain A, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS-A PE=2 SV=2) HSP 1 Score: 187.193 bits (474), Expect = 2.240e-47 Identity = 85/129 (65.89%), Postives = 105/129 (81.40%), Query Frame = 1 Query: 22 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGE 408 + A+ VAPF GLKS++ P ++++ N SNGGR++CM+VWP G+KKFETLSYLPPL+ E LLK+I YLLRS W+PCLEF + G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDATQVLKE+ E Sbjct: 8 SSATSVAPFQGLKSTAGLPVSRRSTNSGFGNVSNGGRIKCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEE 135
BLAST of CX287640 vs. ExPASy Swiss-Prot
Match: RBS1_WHEAT (Ribulose bisphosphate carboxylase small chain PWS4.3, chloroplastic OS=Triticum aestivum PE=3 SV=2) HSP 1 Score: 186.808 bits (473), Expect = 2.926e-47 Identity = 84/129 (65.12%), Postives = 107/129 (82.95%), Query Frame = 1 Query: 22 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGE 408 + A+ VAPF GLKS++ P ++++ + S+ SNGGR++CM+VWP G+KKFETLSYLPPLS EAL K++ YL+RS W+PCLEF + G+V+REH+SSPGYYDGRYWTMWKLPM+GCTDATQVL EV E Sbjct: 8 SSATTVAPFQGLKSTAGLPVSRRSRGSLGSV-SNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALSKQVDYLIRSKWVPCLEFS-KVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEE 134 The following BLAST results are available for this feature:
BLAST of CX287640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 113
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Sequences
The
following sequences are available for this feature:
EST sequence >CX287640 ID=CX287640; Name=CX287640; organism=Citrus clementina; type=EST; length=410bpback to top |