CX287674

Overview
NameCX287674
Unique NameCX287674
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length602
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287674 vs. ExPASy Swiss-Prot
Match: ERF3B_MOUSE (Eukaryotic peptide chain release factor GTP-binding subunit ERF3B OS=Mus musculus GN=Gspt2 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.704e-17
Identity = 47/124 (37.90%), Postives = 66/124 (53.23%), Query Frame = 1
Query:   25 DILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 396
            +IL GF+L   +    +   F  Q+ I+E    +I   GY AVLHIH  +EE EI  L+  +D                  + + R++   +IC E F DF Q+GRFTLR EGKT+A+GKV +L
Sbjct:  506 EILPGFILCEPSNLCHSGRTFDVQIVIIE--HKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKL 627          
BLAST of CX287674 vs. ExPASy Swiss-Prot
Match: ERF3B_HUMAN (Eukaryotic peptide chain release factor GTP-binding subunit ERF3B OS=Homo sapiens GN=GSPT2 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 7.704e-17
Identity = 47/124 (37.90%), Postives = 66/124 (53.23%), Query Frame = 1
Query:   25 DILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 396
            +IL GF+L   +    +   F  Q+ I+E    +I   GY AVLHIH  +EE EI  L+  +D                  + + R++   +IC E F DF Q+GRFTLR EGKT+A+GKV +L
Sbjct:  502 EILPGFILCDPSNLCHSGRTFDVQIVIIE--HKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKL 623          
BLAST of CX287674 vs. ExPASy Swiss-Prot
Match: ERF3A_HUMAN (Eukaryotic peptide chain release factor GTP-binding subunit ERF3A OS=Homo sapiens GN=GSPT1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.006e-16
Identity = 48/124 (38.71%), Postives = 66/124 (53.23%), Query Frame = 1
Query:   25 DILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 396
            +IL GF+L        +   F AQ+ I+E    +I   GY AVLHIH  +EE EI  L+  +D                  + + R++   +IC E F DF Q+GRFTLR EGKT+A+GKV +L
Sbjct:  373 EILPGFILCDPNNLCHSGRTFDAQIVIIE--HKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKL 494          
BLAST of CX287674 vs. ExPASy Swiss-Prot
Match: ERF3_DICDI (Eukaryotic peptide chain release factor GTP-binding subunit OS=Dictyostelium discoideum GN=erf3 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.349e-12
Identity = 39/124 (31.45%), Postives = 62/124 (50.00%), Query Frame = 1
Query:   28 ILSGFVLSSVAKPVAAVTEFIAQLQILELLDNA-IFTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 396
            I  G +L+ + +PV  V+E  A + IL++ +   +FT  + A+ H H  VE+  +  L+  ID                G  V CR+ +  ++C E+F    QL RFT+R   KT+A GKV  +
Sbjct:  420 IRPGSILAEINRPVPVVSEIEAIVYILDMPEERRLFTPSFSAIFHAHTAVEDVTVKSLIATIDTKTSTEIKQKPTFCKVGDAVKCRLVLGRAVCLEEFTTNPQLARFTIRDSTKTIAFGKVINI 543          
BLAST of CX287674 vs. ExPASy Swiss-Prot
Match: EF1A_CALMQ (Elongation factor 1-alpha OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=tuf PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.837e-11
Identity = 35/126 (27.78%), Postives = 61/126 (48.41%), Query Frame = 1
Query:   19 RGDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 396
            R D+  G V+  +  P     E +A++ +LE         GY  V+H+H      +I+EL+ ++D                G + + R++    +  E+F+D   LGRF+LR  G+TVA G++ E+
Sbjct:  312 RQDLKRGDVVGHLNNPPTVAEEIVARIAVLE--HPTTIGVGYTPVMHVHTATVPTQIIELISRLDPATGQTVEQKPQFIKRGDVAMVRLKPLKPVVVERFSDLPALGRFSLRDMGRTVAAGQIIEI 435          
BLAST of CX287674 vs. ExPASy Swiss-Prot
Match: EF1A_DESMO (Elongation factor 1-alpha OS=Desulfurococcus mobilis GN=tuf PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.317e-11
Identity = 36/124 (29.03%), Postives = 57/124 (45.97%), Query Frame = 1
Query:   25 DILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 396
            DI  G V  S+  P     EF A++ ++          GY  V+H+H     C I E++ +ID                G I + + +    +  EK++DF  LGRF +R  GKT+ +G+V E+
Sbjct:  308 DIKRGDVAGSLDVPPTVADEFTARIMVM--WHPTAIAVGYTPVIHVHTASVACRITEIIAKIDPRTGKEIEKNPHFLKQGDIAIVKFKPIKPLVVEKYSDFQGLGRFAMRDMGKTIGIGQVLEI 429          
The following BLAST results are available for this feature:
BLAST of CX287674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
ERF3B_MOUSE7.704e-1737.90Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3B_HUMAN7.704e-1737.90Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3A_HUMAN1.006e-1638.71Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_DICDI3.349e-1231.45Eukaryotic peptide chain release factor GTP-bindin... [more]
EF1A_CALMQ4.837e-1127.78Elongation factor 1-alpha OS=Caldivirga maquilinge... [more]
EF1A_DESMO6.317e-1129.03Elongation factor 1-alpha OS=Desulfurococcus mobil... [more]

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Properties
Property NameValue
Genbank descriptionC01012B06SK Veg1 Citrus clementina cDNA clone C01012B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287674 ID=CX287674; Name=CX287674; organism=Citrus clementina; type=EST; length=602bp
CTCGTGCCGAATTCGGCACGAGGAGATATACTATCTGGTTTTGTCTTGTC
AAGTGTTGCAAAACCAGTAGCCGCAGTCACTGAATTTATTGCCCAGTTGC
AGATTCTTGAGTTGCTGGACAATGCAATTTTTACGGCCGGCTACAAGGCT
GTTTTACACATTCATGCTGTTGTCGAGGAATGTGAGATTGTTGAACTGCT
ACATCAAATCGATCTGAAGACGAAGAAACCGATGAAAAAGAAAGTTCTCT
TTGTTAAGAATGGTGCTATTGTTGTTTGCCGTATTCAGGTGAACAATTCG
ATATGCACTGAAAAGTTTGCAGATTTTGCGCAGCTGGGAAGGTTCACACT
TCGCACTGAAGGGAAAACAGTAGCAGTGGGTAAGGTGACTGAGCTTCCTA
CAGTAAGCAGTAGTGCTTAAAACAATTTTGGCATCTAGAGGTGAGTTGAA
TCAACAAGGCTTTTTGAGTAGCTATTTTTGTCCCAGCTGAACGGGGTTTG
AATTGAAATAGCATCTCCTGCAACTTATTGAAATTCATTGATTCAGCCTT
TGCGAGAAACACACAGCTCTTAATGGCGCTTATGTAGTGCACTGCGTTAT
TG
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