CX287686

Overview
NameCX287686
Unique NameCX287686
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length563
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287686 vs. ExPASy Swiss-Prot
Match: BIK1_ARATH (Serine/threonine-protein kinase BIK1 OS=Arabidopsis thaliana GN=BIK1 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 9.932e-37
Identity = 86/181 (47.51%), Postives = 115/181 (63.54%), Query Frame = 3
Query:   24 LSWQQRVKIAVGAAKGLEYLHEKADP-HIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKL-SEDKVRQCVDARLGGDYPPXXXXXXXXXXXLCVQYEADFRPNMSIVVKALQ 560
            L W  RV +A+ AAKGL +LH  +DP  +I+RDIK+SN+L+  D  AK++DF L+   P       STRV+GT+GY APEY  +G LNA+SDVYSFGV+LLE+L+G++ +DH  P  +++LV WA P L S+ KV   VD RL   Y P            C+ +E   RP M  VV+ALQ
Sbjct:  172 LPWFLRVNVALDAAKGLAFLH--SDPVKVIYRDIKASNILLDADYNAKLSDFGLARDGPMGDLSYVSTRVMGTYGYAAPEYMSSGHLNARSDVYSFGVLLLEILSGKRALDHNRPAKEENLVDWARPYLTSKRKVLLIVDNRLDTQYLPEEAVRMASVAVQCLSFEPKSRPTMDQVVRALQ 350          
BLAST of CX287686 vs. ExPASy Swiss-Prot
Match: APK1B_ARATH (Protein kinase APK1B, chloroplastic OS=Arabidopsis thaliana GN=APK1B PE=2 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 9.932e-37
Identity = 82/180 (45.56%), Postives = 113/180 (62.78%), Query Frame = 3
Query:   24 LSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKL-SEDKVRQCVDARLGGDYPPXXXXXXXXXXXLCVQYEADFRPNMSIVVKALQ 560
            LSW  R+K+A+GAAKGL +LH  A+  +I+RD K+SN+L+  +  AK++DF L+   P       STR++GT+GY APEY  TG L  KSDVYS+GVVLLE+L+GR+ VD   P G+Q LV WA P L ++ K+ + +D RL   Y              C+ +E   RPNM+ VV  L+
Sbjct:  174 LSWTLRLKVALGAAKGLAFLHN-AETSVIYRDFKTSNILLDSEYNAKLSDFGLAKDGPTGDKSHVSTRIMGTYGYAAPEYLATGHLTTKSDVYSYGVVLLEVLSGRRAVDKNRPPGEQKLVEWARPLLANKRKLFRVIDNRLQDQYSMEEACKVATLALRCLTFEIKLRPNMNEVVSHLE 352          
BLAST of CX287686 vs. ExPASy Swiss-Prot
Match: SRF6_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana GN=SRF6 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.297e-36
Identity = 86/179 (48.04%), Postives = 112/179 (62.57%), Query Frame = 3
Query:   24 LSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSE-DKVRQCVDARLGGDYPPXXXXXXXXXXXLCVQYEADFRPNMSIVVKAL 557
            L W  RVKIA+G A+ LEYLHE   P I+ ++IKS+N+L+  +    ++D  L++  P     L+ T      GY APE +M+GQ + KSD+YSFGVV+LELLTGRKP D T  R +QSLV WATP+L + D + + VD  L G YP            LCVQ E +FRP MS VV+AL
Sbjct:  513 LVWNSRVKIALGTARALEYLHEVCSPSIVDKNIKSANILLDSELNPHLSDSGLASFLPTANELLNQTDE----GYSAPEVSMSGQYSLKSDIYSFGVVMLELLTGRKPFDSTRSRSEQSLVRWATPQLHDIDALAKMVDPALKGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQAL 687          
BLAST of CX287686 vs. ExPASy Swiss-Prot
Match: APK1A_ARATH (Protein kinase APK1A, chloroplastic OS=Arabidopsis thaliana GN=APK1A PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.297e-36
Identity = 84/180 (46.67%), Postives = 113/180 (62.78%), Query Frame = 3
Query:   24 LSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKL-SEDKVRQCVDARLGGDYPPXXXXXXXXXXXLCVQYEADFRPNMSIVVKALQ 560
            LSW+ R+K+A+GAAKGL +LH  ++  +I+RD K+SN+L+  +  AK++DF L+   P       STRV+GT GY APEY  TG L  KSDVYSFGVVLLELL+GR+ VD   P G+++LV WA P L ++ K+ + +D RL   Y              C+  E   RPNMS VV  L+
Sbjct:  173 LSWKLRLKVALGAAKGLAFLHS-SETRVIYRDFKTSNILLDSEYNAKLSDFGLAKDGPIGDKSHVSTRVMGTHGYAAPEYLATGHLTTKSDVYSFGVVLLELLSGRRAVDKNRPSGERNLVEWAKPYLVNKRKIFRVIDNRLQDQYSMEEACKVATLSLRCLTTEIKLRPNMSEVVSHLE 351          
BLAST of CX287686 vs. ExPASy Swiss-Prot
Match: NAK_ARATH (Probable serine/threonine-protein kinase NAK OS=Arabidopsis thaliana GN=NAK PE=2 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 2.890e-36
Identity = 83/181 (45.86%), Postives = 116/181 (64.09%), Query Frame = 3
Query:   24 LSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLH-STRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKL-SEDKVRQCVDARLGGDYPPXXXXXXXXXXXLCVQYEADFRPNMSIVVKALQ 560
            LSW  RV++A+GAA+GL +LH  A P +I+RD K+SN+L+  +  AK++DF L+   P M    H STRV+GT GY APEY  TG L+ KSDVYSFGVVLLELL+GR+ +D   P G+ +LV WA P L ++ ++ + +D RL G Y              C+  +A  RP M+ +VK ++
Sbjct:  173 LSWNTRVRMALGAARGLAFLHN-AQPQVIYRDFKASNILLDSNYNAKLSDFGLARDGP-MGDNSHVSTRVMGTQGYAAPEYLATGHLSVKSDVYSFGVVLLELLSGRRAIDKNQPVGEHNLVDWARPYLTNKRRLLRVMDPRLQGQYSLTRALKIAVLALDCISIDAKSRPTMNEIVKTME 351          
BLAST of CX287686 vs. ExPASy Swiss-Prot
Match: Y2296_ARATH (Probable receptor-like protein kinase At2g42960 OS=Arabidopsis thaliana GN=At2g42960 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 3.774e-36
Identity = 80/179 (44.69%), Postives = 109/179 (60.89%), Query Frame = 3
Query:   24 LSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVRQCVDARLGGDYPPXXXXXXXXXXXLCVQYEADFRPNMSIVVKALQ 560
            L+W+ R+KI  G A+ L YLHE  +P ++HRDIK+SN+LI D+  AK++DF L+       + + +TRV+GTFGY APEYA TG LN KSD+YSFGV+LLE +TGR PVD+  P  + +LV W    +   +  + VD RL                  CV  EA+ RP MS V + L+
Sbjct:  278 LTWEARMKIITGTAQALAYLHEAIEPKVVHRDIKASNILIDDEFNAKLSDFGLAKLLDSGESHI-TTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYGRPANEVNLVEWLKMMVGTRRAEEVVDPRLEPRPSKSALKRALLVSLRCVDPEAEKRPRMSQVARMLE 455          
BLAST of CX287686 vs. ExPASy Swiss-Prot
Match: Y1154_ARATH (Probable serine/threonine-protein kinase At1g01540 OS=Arabidopsis thaliana GN=At1g01540 PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 4.173e-35
Identity = 73/179 (40.78%), Postives = 111/179 (62.01%), Query Frame = 3
Query:   24 LSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVRQCVDARLGGDYPPXXXXXXXXXXXLCVQYEADFRPNMSIVVKALQ 560
            L+W  R+ I +G AKGL YLHE  +P ++HRDIKSSN+L+     AK++DF L+      ++ + +TRV+GTFGY APEYA TG LN KSD+YSFG++++E++TGR PVD++ P+G+ +LV W    +   +  + VD ++                  CV  +A+ RP M  ++  L+
Sbjct:  249 LTWDIRMNIILGMAKGLAYLHEGLEPKVVHRDIKSSNILLDRQWNAKVSDFGLAKLLGSESSYV-TTRVMGTFGYVAPEYACTGMLNEKSDIYSFGILIMEIITGRNPVDYSRPQGETNLVDWLKSMVGNRRSEEVVDPKIPEPPSSKALKRVLLVALRCVDPDANKRPKMGHIIHMLE 426          
BLAST of CX287686 vs. ExPASy Swiss-Prot
Match: SRF5_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsis thaliana GN=SRF5 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.586e-34
Identity = 83/179 (46.37%), Postives = 110/179 (61.45%), Query Frame = 3
Query:   24 LSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSE-DKVRQCVDARLGGDYPPXXXXXXXXXXXLCVQYEADFRPNMSIVVKAL 557
            L+W  RV+IA+G A+ +EYLHE   P ++H++IKSSN+L+  D   +++D+ LS         L +++ LG  GY+APE         KSDVYSFGVV+LELLTGR P D   PR ++SLV WATP+L + D +    D  L G YPP           LCVQ E +FRP MS VV+AL
Sbjct:  501 LTWNTRVRIALGTARAVEYLHEACSPSVMHKNIKSSNILLDADLNPRLSDYGLSK------FYLRTSQNLGE-GYNAPEARDPSAYTPKSDVYSFGVVMLELLTGRVPFDGEKPRPERSLVRWATPQLHDIDALSNIADPALHGLYPPKSLSRFADIIALCVQVEPEFRPPMSEVVEAL 672          
BLAST of CX287686 vs. ExPASy Swiss-Prot
Match: SRF1_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsis thaliana GN=SRF1 PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 6.025e-34
Identity = 84/179 (46.93%), Postives = 106/179 (59.22%), Query Frame = 3
Query:   24 LSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSE-DKVRQCVDARLGGDYPPXXXXXXXXXXXLCVQYEADFRPNMSIVVKAL 557
            LSW  RV+IA+ AAK LEYLHE  DP  IHR+ KS+N+L+ DD    ++D  L+      A    S ++L  +GY APE+   G    K DVYSFGVV+LELLTGRK  D    RG+Q LV WA P+L + D + + VD  L GDYP             CVQ E ++RP MS VV+ L
Sbjct:  575 LSWNVRVRIALEAAKALEYLHEICDPPSIHRNFKSANILLDDDIRVHVSDCGLAPLISSGAVSQLSGQLLAAYGYGAPEFEY-GIYTMKCDVYSFGVVMLELLTGRKSYDKKRDRGEQFLVRWAIPQLHDIDALAKMVDPSLKGDYPAKSLSHFADVISRCVQSEPEYRPLMSEVVQDL 752          
BLAST of CX287686 vs. ExPASy Swiss-Prot
Match: Y2393_ARATH (Probable receptor-like protein kinase At2g39360 OS=Arabidopsis thaliana GN=At2g39360 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.342e-33
Identity = 72/145 (49.66%), Postives = 98/145 (67.59%), Query Frame = 3
Query:   18 PVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVRQCVDARLGG 452
            P LSW+QR++I VGAA+GL YLH  +   IIHRD+KS+N+L+ D+ +AK+ADF LS   PD+     ST V G+FGY  PEY    QL  KSDVYSFGVV+LE++ GR  +D +LPR + +L+ WA   + + K+   +D  L G
Sbjct:  579 PRLSWRQRLEICVGAARGLHYLHTGSTRAIIHRDVKSANILLDDNFMAKVADFGLSKTGPDLDQTHVSTAVKGSFGYLDPEYLTRQQLTEKSDVYSFGVVMLEVVCGRPVIDPSLPREKVNLIEWAMKLVKKGKLEDIIDPFLVG 723          
The following BLAST results are available for this feature:
BLAST of CX287686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 399
Match NameE-valueIdentityDescription
BIK1_ARATH9.932e-3747.51Serine/threonine-protein kinase BIK1 OS=Arabidopsi... [more]
APK1B_ARATH9.932e-3745.56Protein kinase APK1B, chloroplastic OS=Arabidopsis... [more]
SRF6_ARATH1.297e-3648.04Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsi... [more]
APK1A_ARATH1.297e-3646.67Protein kinase APK1A, chloroplastic OS=Arabidopsis... [more]
NAK_ARATH2.890e-3645.86Probable serine/threonine-protein kinase NAK OS=Ar... [more]
Y2296_ARATH3.774e-3644.69Probable receptor-like protein kinase At2g42960 OS... [more]
Y1154_ARATH4.173e-3540.78Probable serine/threonine-protein kinase At1g01540... [more]
SRF5_ARATH1.586e-3446.37Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsi... [more]
SRF1_ARATH6.025e-3446.93Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsi... [more]
Y2393_ARATH1.342e-3349.66Probable receptor-like protein kinase At2g39360 OS... [more]

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Properties
Property NameValue
Genbank descriptionC01012C06SK Veg1 Citrus clementina cDNA clone C01012C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287686 ID=CX287686; Name=CX287686; organism=Citrus clementina; type=EST; length=563bp
AAGGAGCTCAGCCTGGTCCTGTTTTGTCATGGCAACAGCGAGTGAAAATT
GCTGTAGGGGCTGCGAAAGGGCTTGAATACTTGCATGAGAAGGCAGATCC
TCATATTATCCATCGCGATATTAAGTCCAGCAATGTACTAATTTTTGATG
ATGATGTAGCAAAGATTGCCGACTTTGATTTATCTAATCAAGCTCCTGAT
ATGGCAGCTCGCCTTCATTCTACTCGTGTTCTTGGAACTTTTGGTTATCA
TGCTCCTGAGTATGCAATGACTGGACAGTTGAATGCAAAGAGTGATGTAT
ACAGCTTTGGTGTTGTTCTGCTTGAGCTTCTGACAGGTCGAAAACCTGTC
GATCATACACTACCACGTGGACAGCAGAGTCTAGTGACATGGGCCACACC
GAAACTTAGTGAAGATAAGGTTAGGCAATGCGTTGATGCAAGACTAGGAG
GAGATTATCCTCCCAAGGCAGTTGCAAAGATGGCTGCAGTTGCTGCTCTG
TGTGTTCAGTATGAAGCTGATTTCCGTCCAAATATGAGCATTGTTGTCAA
AGCCCTCCAGCCC
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