CX287687

Overview
NameCX287687
Unique NameCX287687
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length401
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287687 vs. ExPASy Swiss-Prot
Match: FLS_MATIN (Flavonol synthase/flavanone 3-hydroxylase (Fragment) OS=Matthiola incana PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.137e-11
Identity = 39/130 (30.00%), Postives = 70/130 (53.85%), Query Frame = 2
Query:    2 EFFKLPLEEKMACAQLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLFEDGIQGI-RMNYYPPCAQANRVIGLTPHSD 388
            EFF+LP  EK +CA+   S+EGYG+   +   ++    D ++L T P +      WP  P   R   EEY+  ++ ++  +++ +++ LG+  G+ A    +G   +  +N+YPP   ++   GL PH+D
Sbjct:   50 EFFELPEAEKRSCAREAGSVEGYGRRIELDIKKRKGIVDQIYLSTWPPSSVNYRYWPKSPPDYREVNEEYARHVKTLSEKIMEWLSEGLGL--GREAIKEVNGCWYVMNINHYPPYPHSDSFNGLEPHTD 177          
BLAST of CX287687 vs. ExPASy Swiss-Prot
Match: FL3H_MATIN (Naringenin,2-oxoglutarate 3-dioxygenase (Fragment) OS=Matthiola incana GN=FHT PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.137e-11
Identity = 39/129 (30.23%), Postives = 63/129 (48.84%), Query Frame = 2
Query:    2 EFFKLPLEEKMACAQLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLFEDGIQGIRMNYYPPCAQANRVIGLTPHSD 388
            +FF LP EEK+          G+  +  +  +   DW +++   + P   R  S WP  P       EEYS +L  +   LL+++++ +G+E   L +   D  Q I +NYYP C Q +  +GL  H+D
Sbjct:   90 DFFALPPEEKLRFDMSGGKKGGFIVSSHLQGEAVQDWREIVTYFSYPVRNRDYSRWPDKPQGWAKVTEEYSEKLMGLACKLLEVLSEAMGLEKESLTNACVDMDQKIVVNYYPKCPQPDLTLGLKRHTD 218          
BLAST of CX287687 vs. ExPASy Swiss-Prot
Match: G3OX2_ARATH (Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA4H PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.485e-11
Identity = 40/136 (29.41%), Postives = 67/136 (49.26%), Query Frame = 2
Query:    8 FKLPLEEKMACAQLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLA-----SLFEDGIQGIRMNYYPPCAQANRVIGLTPHSDSVAL 400
            F+LP++ K+  A+  N + GYG A + S   K  W +   ++  P +     LWP+        IEEY   +QK+   L+     +LG+E   +      S F+     I++N+YP C + +R +GL  H+DS  +
Sbjct:   97 FRLPVQRKLKAARSENGVSGYGVARIASFFNKKMWSEGFTVIGSPLH-DFRKLWPSHHLKYCEIIEEYEEHMQKLAAKLMWFALGSLGVEEKDIQWAGPNSDFQGTQAVIQLNHYPKCPEPDRAMGLAAHTDSTLM 231          
BLAST of CX287687 vs. ExPASy Swiss-Prot
Match: FL3H_ARATH (Naringenin,2-oxoglutarate 3-dioxygenase OS=Arabidopsis thaliana GN=F3H PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.309e-11
Identity = 38/129 (29.46%), Postives = 62/129 (48.06%), Query Frame = 2
Query:    2 EFFKLPLEEKMACAQLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLFEDGIQGIRMNYYPPCAQANRVIGLTPHSD 388
            +FF LP E+K+          G+  +  +  +   DW +++   + P   R  S WP  P       EEYS  L  +   LL+++++ +G+E   L +   D  Q I +NYYP C Q +  +GL  H+D
Sbjct:   91 DFFALPPEDKLRFDMSGGKKGGFIVSSHLQGEAVQDWREIVTYFSYPVRNRDYSRWPDKPEGWVKVTEEYSERLMSLACKLLEVLSEAMGLEKESLTNACVDMDQKIVVNYYPKCPQPDLTLGLKRHTD 219          
BLAST of CX287687 vs. ExPASy Swiss-Prot
Match: FL3H_HORVU (Naringenin,2-oxoglutarate 3-dioxygenase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.644e-11
Identity = 36/129 (27.91%), Postives = 62/129 (48.06%), Query Frame = 2
Query:    2 EFFKLPLEEKMACAQLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLFEDGIQGIRMNYYPPCAQANRVIGLTPHSD 388
            EFF LP E+K+          G+  +  +  +   DW +++   + P   R    WP  P    A +E YS  L  ++  L+ ++++ +G+E   LA    D  Q + +N+YP C Q +  +GL  H+D
Sbjct:   94 EFFALPAEDKLRYDMSGGKKGGFIVSSHLQGEAVQDWREIVTYFSYPVKARDYGRWPEKPAGWCAVVERYSERLMGLSCNLMGVLSEAMGLETEALAKACVDMDQKVVVNFYPRCPQPDLTLGLKRHTD 222          
BLAST of CX287687 vs. ExPASy Swiss-Prot
Match: FL3H_MALDO (Naringenin,2-oxoglutarate 3-dioxygenase OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.627e-11
Identity = 37/129 (28.68%), Postives = 63/129 (48.84%), Query Frame = 2
Query:    2 EFFKLPLEEKMACAQLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLFEDGIQGIRMNYYPPCAQANRVIGLTPHSD 388
            EFF LP EEK+          G+  +  +  +   DW +++   + P   R  S WP  P + R   ++YS EL  +   LL ++++ +G++   L     D  Q + +N+YP C Q +  +GL  H+D
Sbjct:   92 EFFALPSEEKLRFDMSGGKKGGFIVSSHLQGEAVQDWREIVTYFSYPIRHRDYSRWPDKPEAWREVTKKYSDELMGLACKLLGVLSEAMGLDTEALTKACVDMDQKVVVNFYPKCPQPDLTLGLKRHTD 220          
The following BLAST results are available for this feature:
BLAST of CX287687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
FLS_MATIN1.137e-1130.00Flavonol synthase/flavanone 3-hydroxylase (Fragmen... [more]
FL3H_MATIN1.137e-1130.23Naringenin,2-oxoglutarate 3-dioxygenase (Fragment)... [more]
G3OX2_ARATH1.485e-1129.41Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis th... [more]
FL3H_ARATH3.309e-1129.46Naringenin,2-oxoglutarate 3-dioxygenase OS=Arabido... [more]
FL3H_HORVU5.644e-1127.91Naringenin,2-oxoglutarate 3-dioxygenase OS=Hordeum... [more]
FL3H_MALDO9.627e-1128.68Naringenin,2-oxoglutarate 3-dioxygenase OS=Malus d... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01012C07SK Veg1 Citrus clementina cDNA clone C01012C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287687 ID=CX287687; Name=CX287687; organism=Citrus clementina; type=EST; length=401bp
GGAATTCTTTAAGCTGCCATTAGAGGAGAAGATGGCTTGCGCACAGCTGC
CAAATAGCATTGAAGGTTATGGGCAAGCTTTCGTTGTCTCCAAGGATCAA
AAGCTTGATTGGGGAGACATGCTTTTTCTTCTTACTCAACCTGCCAATAT
TAGAACCACGAGTCTCTGGCCTACCATCCCTACTTCTTTAAGAGCAACCA
TAGAGGAATACTCTTTGGAACTGCAAAAGGTTACAATCTTTCTGTTGAAG
TTGATGGCTAAGAATTTGGGGATTGAACCTGGGAAACTTGCAAGCTTGTT
TGAAGATGGTATACAAGGAATAAGAATGAATTATTATCCACCATGTGCCC
AGGCCAACAGGGTTATTGGTCTCACTCCACACTCTGACTCTGTTGCATTA
A
back to top