CX287726

Overview
NameCX287726
Unique NameCX287726
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length418
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287726 vs. ExPASy Swiss-Prot
Match: RS7_META3 (30S ribosomal protein S7P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps7p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.084e-13
Identity = 38/86 (44.19%), Postives = 55/86 (63.95%), Query Frame = 2
Query:  152 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEII 409
            ++KLFN+W   ++ V D SL  YI ++      +VPHT+GR S + F KA+  IVERL N+LM   +N G+K + + IV+ A EII
Sbjct:    2 EIKLFNKWDTTEIVVKDPSLRHYINLEPI----FVPHTSGRNSGRMFEKAKMNIVERLVNNLMRAEQNTGQKQVTLSIVEEAFEII 83          
BLAST of CX287726 vs. ExPASy Swiss-Prot
Match: RS7_METB6 (30S ribosomal protein S7P OS=Methanoregula boonei (strain 6A8) GN=rps7p PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.947e-13
Identity = 39/100 (39.00%), Postives = 56/100 (56.00%), Query Frame = 2
Query:  113 VVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIH 412
            V AQ +  + P     LFN+W   +V+V D SL  Y+ +        +PH+ G++S + F KA   IVERL N LM    N GKK +A+ IV+ A E+I+
Sbjct:    6 VKAQPEGDAAPQSKALLFNKWDVSEVKVTDPSLVRYVNLTPQ----IIPHSCGKFSRQEFNKANMMIVERLINRLMQTENNTGKKQLAIGIVRDAFELIN 101          
BLAST of CX287726 vs. ExPASy Swiss-Prot
Match: RS7_METMP (30S ribosomal protein S7P OS=Methanococcus maripaludis GN=rps7p PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.355e-12
Identity = 41/86 (47.67%), Postives = 50/86 (58.14%), Query Frame = 2
Query:  152 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEII 409
            ++KLF +W  E V V D SL  YI V        VPHTAGR S K F K++  IVERL N LM +  N GKK   + IV+ A+ II
Sbjct:    2 EIKLFGKWDSETVAVKDPSLKSYISVAPV----LVPHTAGRNSKKSFDKSKMNIVERLANKLMANQNNTGKKHETLAIVEEALTII 83          
BLAST of CX287726 vs. ExPASy Swiss-Prot
Match: RS7_METM5 (30S ribosomal protein S7P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps7p PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.355e-12
Identity = 41/86 (47.67%), Postives = 50/86 (58.14%), Query Frame = 2
Query:  152 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEII 409
            ++KLF +W  E V V D SL  YI V        VPHTAGR + K F KA+  IVERL N LM +  N GKK   + IV+ A+ II
Sbjct:    2 EIKLFGKWDSETVTVKDPSLKSYISVAPV----LVPHTAGRNTKKSFDKAKMNIVERLANKLMANQNNTGKKHETLAIVEEALAII 83          
BLAST of CX287726 vs. ExPASy Swiss-Prot
Match: RS7_METM7 (30S ribosomal protein S7P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps7p PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.770e-12
Identity = 40/86 (46.51%), Postives = 50/86 (58.14%), Query Frame = 2
Query:  152 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEII 409
            ++KLF +W  E V V D SL  Y+ V        VPHTAGR S K F K++  IVERL N LM +  N GKK   + IV+ A+ II
Sbjct:    2 EIKLFGKWDSETVTVKDPSLKSYVSVAPV----LVPHTAGRNSKKSFDKSKMNIVERLANKLMANQENTGKKHETLAIVEEALTII 83          
BLAST of CX287726 vs. ExPASy Swiss-Prot
Match: RS7_METM6 (30S ribosomal protein S7P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps7p PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.770e-12
Identity = 40/86 (46.51%), Postives = 50/86 (58.14%), Query Frame = 2
Query:  152 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEII 409
            ++KLF +W  E V V D SL  Y+ V        VPHTAGR S K F K++  IVERL N LM +  N GKK   + IV+ A+ II
Sbjct:    2 EIKLFGKWDSETVTVKDPSLKSYVSVTPV----LVPHTAGRNSKKSFDKSKMNIVERLANKLMANQNNTGKKHETLAIVEEALTII 83          
BLAST of CX287726 vs. ExPASy Swiss-Prot
Match: RS7_METHJ (30S ribosomal protein S7P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps7p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.312e-12
Identity = 36/84 (42.86%), Postives = 51/84 (60.71%), Query Frame = 2
Query:  161 LFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIH 412
            LFNRW   +V + D  ++ Y+ +    ++  VPH+ GR + + F KA   IVERL N LM    N GKK +A+RIV+ A EI+H
Sbjct:   12 LFNRWDTSEVTIRDPGIARYVNL----NSMMVPHSCGRLTRQEFHKANMLIVERLINQLMRTEVNTGKKQLAIRIVRDAFEIVH 91          
BLAST of CX287726 vs. ExPASy Swiss-Prot
Match: RS7_HALMA (30S ribosomal protein S7P OS=Haloarcula marismortui GN=rps7p PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.312e-12
Identity = 40/103 (38.83%), Postives = 55/103 (53.40%), Query Frame = 2
Query:  104 ATAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIH 412
            A A  A+  +P       KLF  W   D++ +D S   YI V      T + HT GR++ K+F+K++  IVERL N LM    N GKK +A  IV  A E++H
Sbjct:    9 ADADAAEESEPETAR--AKLFGEWDITDIEYSDPSTERYITV------TPIAHTMGRHADKQFKKSEISIVERLINRLMQTDENTGKKQLATSIVTEAFELVH 103          
BLAST of CX287726 vs. ExPASy Swiss-Prot
Match: RS7_CALMQ (30S ribosomal protein S7P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps7p PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.944e-12
Identity = 35/87 (40.23%), Postives = 52/87 (59.77%), Query Frame = 2
Query:  155 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHL 415
            + LF +W   DV + D  L  Y+ ++       +PHT G+Y  ++F KA  PI+ER+ N LM  GRN GKK  A +I+K A +II++
Sbjct:   40 ILLFGKWNVNDVVIRDPGLRRYMCLKPM----LLPHTEGKYQNRKFGKAMIPIIERMMNQLMKPGRNAGKKQKAYKILKTAFDIIYV 122          
BLAST of CX287726 vs. ExPASy Swiss-Prot
Match: RS7_METBU (30S ribosomal protein S7P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps7p PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.727e-12
Identity = 32/85 (37.65%), Postives = 54/85 (63.53%), Query Frame = 2
Query:  158 KLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIH 412
            KLF +W   +V+V D  +  Y+ +        VPHT+G+++ ++F K+   IVERL N++M + +N GKK +A+RIV  A +I++
Sbjct:    3 KLFGKWDLTEVEVADAGIKRYVNLDPV----IVPHTSGKHARQQFNKSDITIVERLVNNVMRNAQNTGKKQIALRIVDEAFDIVN 83          
The following BLAST results are available for this feature:
BLAST of CX287726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
RS7_META36.084e-1344.1930S ribosomal protein S7P OS=Methanococcus aeolicu... [more]
RS7_METB67.947e-1339.0030S ribosomal protein S7P OS=Methanoregula boonei ... [more]
RS7_METMP1.355e-1247.6730S ribosomal protein S7P OS=Methanococcus maripal... [more]
RS7_METM51.355e-1247.6730S ribosomal protein S7P OS=Methanococcus maripal... [more]
RS7_METM71.770e-1246.5130S ribosomal protein S7P OS=Methanococcus maripal... [more]
RS7_METM61.770e-1246.5130S ribosomal protein S7P OS=Methanococcus maripal... [more]
RS7_METHJ2.312e-1242.8630S ribosomal protein S7P OS=Methanospirillum hung... [more]
RS7_HALMA2.312e-1238.8330S ribosomal protein S7P OS=Haloarcula marismortu... [more]
RS7_CALMQ3.944e-1240.2330S ribosomal protein S7P OS=Caldivirga maquilinge... [more]
RS7_METBU6.727e-1237.6530S ribosomal protein S7P OS=Methanococcoides burt... [more]

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Properties
Property NameValue
Genbank descriptionC01012F11SK Veg1 Citrus clementina cDNA clone C01012F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287726 ID=CX287726; Name=CX287726; organism=Citrus clementina; type=EST; length=418bp
CGGCACGAGGCCTCGTGCCGAATTCGGCACGAGGCGGCAGCCGATTCTTA
TTATTTTATCTCTCTCGCTCTCTCACTCTCTCAAAGCTCTTCAGGTAAGA
ATGGCGACTGCTGTAGTGGCACAATCTCAAGACCCATCACAGCCTCACTA
CGATGTGAAGCTCTTCAATAGGTGGACTTTCGAGGATGTTCAGGTCAATG
ACATCTCGTTGAGTGATTATATTGGCGTGCAAGCGGCCAAGCACGCTACT
TATGTGCCTCACACTGCTGGGAGGTACTCAGTTAAGCGTTTCCGGAAGGC
CCAATGTCCCATTGTTGAGAGGCTTACGAACTCTCTTATGATGCACGGTC
GTAACAACGGCAAGAAATTGATGGCCGTCAGGATTGTTAAGCATGCCATG
GAGATCATTCACCTTTTG
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