CX287748

Overview
NameCX287748
Unique NameCX287748
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length401
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287748 vs. ExPASy Swiss-Prot
Match: CH10_SYNP2 (10 kDa chaperonin OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=groS PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.695e-15
Identity = 38/83 (45.78%), Postives = 60/83 (72.29%), Query Frame = -3
Query:  151 VAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 399
            V+E+EE TAGG+LL +++KEKP IG V+AVG G  +++G+R  + +  G+ V+YSKYAG D K S G +Y+ L   +++A ++
Sbjct:   22 VSESEEKTAGGILLPDSAKEKPQIGEVVAVGEGKRNDDGSRSAVDVKVGDKVLYSKYAGTDIKLS-GDDYVLLSEKDILATVA 103          
BLAST of CX287748 vs. ExPASy Swiss-Prot
Match: CH10_PROMT (10 kDa chaperonin OS=Prochlorococcus marinus (strain NATL2A) GN=groS PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.695e-15
Identity = 40/84 (47.62%), Postives = 60/84 (71.43%), Query Frame = -3
Query:  151 VAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIALRASEVMAVLS 399
            V+E+EE TAGG+LL + +KEKP +G V  VGPG  +E+G+R+   ++ G+ V+YSKYAG D K GSD   Y+ L   +++AV++
Sbjct:   22 VSESEEKTAGGILLPDTAKEKPQVGEVAQVGPGKRNEDGSRQSPEVSVGDKVLYSKYAGTDIKLGSD--EYVLLSEKDILAVVN 103          
BLAST of CX287748 vs. ExPASy Swiss-Prot
Match: CH10_PROM1 (10 kDa chaperonin OS=Prochlorococcus marinus (strain NATL1A) GN=groS PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.695e-15
Identity = 40/84 (47.62%), Postives = 60/84 (71.43%), Query Frame = -3
Query:  151 VAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIALRASEVMAVLS 399
            V+E+EE TAGG+LL + +KEKP +G V  VGPG  +E+G+R+   ++ G+ V+YSKYAG D K GSD   Y+ L   +++AV++
Sbjct:   22 VSESEEKTAGGILLPDTAKEKPQVGEVAQVGPGKRNEDGSRQSPEVSVGDKVLYSKYAGTDIKLGSD--EYVLLSEKDILAVVN 103          
BLAST of CX287748 vs. ExPASy Swiss-Prot
Match: CH10_PROM4 (10 kDa chaperonin OS=Prochlorococcus marinus (strain MIT 9211) GN=groS PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.214e-15
Identity = 40/84 (47.62%), Postives = 59/84 (70.24%), Query Frame = -3
Query:  151 VAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIALRASEVMAVLS 399
            V+E+EE TAGG+LL + +KEKP +G V  VGPG  +E+G+R+   +  G+ V+YSKYAG D K GSD   Y+ L   +++AV++
Sbjct:   22 VSESEEKTAGGILLPDTAKEKPQVGEVAQVGPGKRNEDGSRQAPEVGVGDKVLYSKYAGTDIKLGSD--EYVLLSEKDILAVVN 103          
BLAST of CX287748 vs. ExPASy Swiss-Prot
Match: CH10_PROM2 (10 kDa chaperonin OS=Prochlorococcus marinus (strain MIT 9215) GN=groS PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.214e-15
Identity = 38/83 (45.78%), Postives = 59/83 (71.08%), Query Frame = -3
Query:  151 VAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 399
            V+ +EE TAGG+LL +++KEKP +G V  VGPG L+++G+R+   ++ G+ V+YSKYAG D K   G  Y+ L   +++AV+S
Sbjct:   22 VSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSIGDKVLYSKYAGTDIK-LGGDEYVLLSEKDILAVVS 103          
BLAST of CX287748 vs. ExPASy Swiss-Prot
Match: CH10_PROM0 (10 kDa chaperonin OS=Prochlorococcus marinus (strain MIT 9301) GN=groS PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.214e-15
Identity = 38/83 (45.78%), Postives = 59/83 (71.08%), Query Frame = -3
Query:  151 VAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 399
            V+ +EE TAGG+LL +++KEKP +G V  VGPG L+++G+R+   ++ G+ V+YSKYAG D K   G  Y+ L   +++AV+S
Sbjct:   22 VSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSIGDKVLYSKYAGTDIK-LGGDEYVLLSEKDILAVVS 103          
BLAST of CX287748 vs. ExPASy Swiss-Prot
Match: CH10_ARTS2 (10 kDa chaperonin OS=Arthrobacter sp. (strain FB24) GN=groS PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.214e-15
Identity = 39/80 (48.75%), Postives = 59/80 (73.75%), Query Frame = -3
Query:  154 EAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 393
            EAE+TTA GL++ ++++EKP  G V+AVGPG   E+GNR P+ +A G+ V+YSKY G + K + GT Y+ L A +V+A++
Sbjct:   18 EAEQTTASGLVIPDSAQEKPQEGEVVAVGPGRF-EDGNRVPVDVAVGDVVIYSKYGGTEVK-TGGTEYLVLSARDVLAIV 95          
BLAST of CX287748 vs. ExPASy Swiss-Prot
Match: CH10_TRIEI (10 kDa chaperonin OS=Trichodesmium erythraeum (strain IMS101) GN=groS PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.892e-15
Identity = 35/83 (42.17%), Postives = 58/83 (69.88%), Query Frame = -3
Query:  151 VAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 399
            V+E+EE TAGG+LL +++KEKP +G V++ GPG  +++G R  + +  G+ V+YSKYAG D K   G  Y+ L   +++A+++
Sbjct:   22 VSESEEKTAGGILLPDSAKEKPQVGEVVSAGPGKRNDDGTRAEMEVKVGDKVLYSKYAGTDIK-LGGDEYVLLAEKDILAIVN 103          
BLAST of CX287748 vs. ExPASy Swiss-Prot
Match: CH10_CYAA5 (10 kDa chaperonin OS=Cyanothece sp. (strain ATCC 51142) GN=groS PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.892e-15
Identity = 39/80 (48.75%), Postives = 57/80 (71.25%), Query Frame = -3
Query:  160 VAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMA 399
            V+ AEE TAGG+LL + ++EKP IG V+AVGPG  +++G+R  L +  G+ V+YSKYAG D K S G +Y+ L   +++A
Sbjct:   22 VSPAEEKTAGGILLPDNAQEKPQIGEVVAVGPGKRNDDGSRSELDVKVGDKVLYSKYAGTDVKLS-GEDYVLLSEKDILA 100          
BLAST of CX287748 vs. ExPASy Swiss-Prot
Match: CH10_SYNS3 (10 kDa chaperonin OS=Synechococcus sp. (strain CC9311) GN=groS PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.777e-15
Identity = 38/83 (45.78%), Postives = 59/83 (71.08%), Query Frame = -3
Query:  154 VAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIALRASEVMAVL 399
            ++E+EE TAGG+LL + +KEKP +G V+ VGPG  +++G+R+   +  G+ V+YSKYAG D K GSD   Y+ L   +++AV+
Sbjct:   22 ISESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKSNDDGSRQAPEVGIGDKVLYSKYAGTDIKLGSD--EYVLLSEKDILAVV 102          
The following BLAST results are available for this feature:
BLAST of CX287748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 257
Match NameE-valueIdentityDescription
CH10_SYNP21.695e-1545.7810 kDa chaperonin OS=Synechococcus sp. (strain ATC... [more]
CH10_PROMT1.695e-1547.6210 kDa chaperonin OS=Prochlorococcus marinus (stra... [more]
CH10_PROM11.695e-1547.6210 kDa chaperonin OS=Prochlorococcus marinus (stra... [more]
CH10_PROM42.214e-1547.6210 kDa chaperonin OS=Prochlorococcus marinus (stra... [more]
CH10_PROM22.214e-1545.7810 kDa chaperonin OS=Prochlorococcus marinus (stra... [more]
CH10_PROM02.214e-1545.7810 kDa chaperonin OS=Prochlorococcus marinus (stra... [more]
CH10_ARTS22.214e-1548.7510 kDa chaperonin OS=Arthrobacter sp. (strain FB24... [more]
CH10_TRIEI2.892e-1542.1710 kDa chaperonin OS=Trichodesmium erythraeum (str... [more]
CH10_CYAA52.892e-1548.7510 kDa chaperonin OS=Cyanothece sp. (strain ATCC 5... [more]
CH10_SYNS33.777e-1545.7810 kDa chaperonin OS=Synechococcus sp. (strain CC9... [more]

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Properties
Property NameValue
Genbank descriptionC01012H09SK Veg1 Citrus clementina cDNA clone C01012H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287748 ID=CX287748; Name=CX287748; organism=Citrus clementina; type=EST; length=401bp
AAAAACAAGCAGCAATTCGATTGATCAAGCTGCAATTCTTTATGTTCAAA
TAAGAGGACAGTCAAAATCCGTATGCCTTGAGGCAACTCAACCATAAAAT
TCAATTCACTAATACATATAAAGCCTCGCTCAAGTAAACACAGACAACTA
AGAGAGCACAGCCATCACTTCAGAAGCTCTTAAAGCAATGTAGTTGGTAC
CATCACTGCCCTTGAAGTCATTCCCTGCATACTTCGAATACATCACCGTG
TTCCCTGGTGCAATGGATAGAGGTTTCCTATTACCTTCCTCATCTAGAGG
ACCGGGTCCAACAGCAATGACCGTTCCAATGGAAGGTTTCTCCTTGCTTG
CCTCCGTCAACAACAAACCTCCAGCAGTTGTCTCCTCAGCCTCAGCAACC
T
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