CX287748

Overview
NameCX287748
Unique NameCX287748
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length401
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287748 vs. ExPASy Swiss-Prot
Match: CH10_LISMF (10 kDa chaperonin OS=Listeria monocytogenes serotype 4b (strain F2365) GN=groS PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.414e-15
Identity = 35/81 (43.21%), Postives = 60/81 (74.07%), Query Frame = -3
Query:  157 VAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAV 399
            V EAEE TA G++L +++KEKP  G ++AVG G + + G ++PL +A G+TV+++KY+G +    +GT+Y+ LR S+++A+
Sbjct:   13 VLEAEEKTASGIVLPDSAKEKPQSGKIVAVGSGRVLDNGTKEPLEVAEGDTVIFAKYSGTEVT-YEGTDYLILRESDILAI 92          
BLAST of CX287748 vs. ExPASy Swiss-Prot
Match: CH10_LISMC (10 kDa chaperonin OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=groS PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.414e-15
Identity = 35/81 (43.21%), Postives = 60/81 (74.07%), Query Frame = -3
Query:  157 VAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAV 399
            V EAEE TA G++L +++KEKP  G ++AVG G + + G ++PL +A G+TV+++KY+G +    +GT+Y+ LR S+++A+
Sbjct:   13 VLEAEEKTASGIVLPDSAKEKPQSGKIVAVGSGRVLDNGTKEPLEVAEGDTVIFAKYSGTEVT-YEGTDYLILRESDILAI 92          
BLAST of CX287748 vs. ExPASy Swiss-Prot
Match: CH10_LISIN (10 kDa chaperonin OS=Listeria innocua GN=groS PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.414e-15
Identity = 35/81 (43.21%), Postives = 60/81 (74.07%), Query Frame = -3
Query:  157 VAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAV 399
            V EAEE TA G++L +++KEKP  G ++AVG G + + G ++PL +A G+TV+++KY+G +    +GT+Y+ LR S+++A+
Sbjct:   13 VLEAEEKTASGIVLPDSAKEKPQSGKIVAVGSGRVLDNGTKEPLEVAEGDTVIFAKYSGTEVT-YEGTDYLILRESDILAI 92          
BLAST of CX287748 vs. ExPASy Swiss-Prot
Match: CH10_BACWK (10 kDa chaperonin OS=Bacillus weihenstephanensis (strain KBAB4) GN=groS PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.414e-15
Identity = 38/82 (46.34%), Postives = 58/82 (70.73%), Query Frame = -3
Query:  154 VAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 399
            + +AEE TA G++L E +KEKP  G VIAVG G + E G R  L +A G+ +++SKYAG + K  +GT+Y+ LR S+++A++
Sbjct:   13 LVQAEEKTASGIVLPETAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVK-YEGTDYLILRESDILAII 93          
BLAST of CX287748 vs. ExPASy Swiss-Prot
Match: CH10_STRLI (10 kDa chaperonin OS=Streptomyces lividans GN=groS PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.099e-14
Identity = 38/80 (47.50%), Postives = 57/80 (71.25%), Query Frame = -3
Query:  154 EAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 393
            +AE+TTA GL++ + +KEKP  G V+AVGPG   E+GNR PL ++ G+ V+YSKY G + K  +G  Y+ L A +V+A++
Sbjct:   23 DAEQTTASGLVIPDTAKEKPQEGVVLAVGPGRF-EDGNRLPLDVSVGDVVLYSKYGGTEVK-YNGEEYLVLSARDVLAIV 100          
BLAST of CX287748 vs. ExPASy Swiss-Prot
Match: CH10_STRCO (10 kDa chaperonin OS=Streptomyces coelicolor GN=groS PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.099e-14
Identity = 38/80 (47.50%), Postives = 57/80 (71.25%), Query Frame = -3
Query:  154 EAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 393
            +AE+TTA GL++ + +KEKP  G V+AVGPG   E+GNR PL ++ G+ V+YSKY G + K  +G  Y+ L A +V+A++
Sbjct:   23 DAEQTTASGLVIPDTAKEKPQEGVVLAVGPGRF-EDGNRLPLDVSVGDVVLYSKYGGTEVK-YNGEEYLVLSARDVLAIV 100          
BLAST of CX287748 vs. ExPASy Swiss-Prot
Match: CH10_LAWIP (10 kDa chaperonin OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=groS PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.099e-14
Identity = 35/81 (43.21%), Postives = 58/81 (71.60%), Query Frame = -3
Query:  151 EAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 393
            E+EE TAGGL + + +KEKPS G V+AVGPG   ++G   P+++  G+TV+++KYAG + K  DG  ++ +R  +++AV++
Sbjct:   16 ESEEKTAGGLYIPDTAKEKPSRGEVVAVGPGKHTDDGKLIPMAVKAGDTVLFNKYAGTEVK-LDGVEHLVMREDDILAVIT 95          
BLAST of CX287748 vs. ExPASy Swiss-Prot
Match: CH10_LAWIN (10 kDa chaperonin OS=Lawsonia intracellularis GN=groS PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.099e-14
Identity = 35/81 (43.21%), Postives = 58/81 (71.60%), Query Frame = -3
Query:  151 EAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 393
            E+EE TAGGL + + +KEKPS G V+AVGPG   ++G   P+++  G+TV+++KYAG + K  DG  ++ +R  +++AV++
Sbjct:   16 ESEEKTAGGLYIPDTAKEKPSRGEVVAVGPGKHTDDGKLIPMAVKAGDTVLFNKYAGTEVK-LDGVEHLVMREDDILAVIT 95          
BLAST of CX287748 vs. ExPASy Swiss-Prot
Match: CH10_SYNY3 (10 kDa chaperonin OS=Synechocystis sp. (strain PCC 6803) GN=groS PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 1.435e-14
Identity = 37/80 (46.25%), Postives = 54/80 (67.50%), Query Frame = -3
Query:  160 VAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMA 399
            V+ AEE TAGG+LL + +KEKP IG V+ VGPG  +++G   P+ +  G+ V+YSKYAG D K   G +Y+ L   +++A
Sbjct:   22 VSPAEEKTAGGILLPDNAKEKPQIGEVVQVGPGKRNDDGTYSPVEVKVGDKVLYSKYAGTDIK-LGGDDYVLLTEKDILA 100          
BLAST of CX287748 vs. ExPASy Swiss-Prot
Match: CH10_STRAW (10 kDa chaperonin OS=Streptomyces avermitilis GN=groS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.435e-14
Identity = 38/80 (47.50%), Postives = 56/80 (70.00%), Query Frame = -3
Query:  154 EAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 393
            +AE+TTA GL++ + +KEKP  G V+AVGPG   E+GNR PL +  G+ V+YSKY G + K  +G  Y+ L A +V+A++
Sbjct:   23 DAEQTTASGLVIPDTAKEKPQEGVVLAVGPGRF-EDGNRLPLDVTVGDVVLYSKYGGTEVK-YNGEEYLVLSARDVLAIV 100          
The following BLAST results are available for this feature:
BLAST of CX287748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 257
Match NameE-valueIdentityDescription
CH10_LISMF8.414e-1543.2110 kDa chaperonin OS=Listeria monocytogenes seroty... [more]
CH10_LISMC8.414e-1543.2110 kDa chaperonin OS=Listeria monocytogenes seroty... [more]
CH10_LISIN8.414e-1543.2110 kDa chaperonin OS=Listeria innocua GN=groS PE=3... [more]
CH10_BACWK8.414e-1546.3410 kDa chaperonin OS=Bacillus weihenstephanensis (... [more]
CH10_STRLI1.099e-1447.5010 kDa chaperonin OS=Streptomyces lividans GN=groS... [more]
CH10_STRCO1.099e-1447.5010 kDa chaperonin OS=Streptomyces coelicolor GN=gr... [more]
CH10_LAWIP1.099e-1443.2110 kDa chaperonin OS=Lawsonia intracellularis (str... [more]
CH10_LAWIN1.099e-1443.2110 kDa chaperonin OS=Lawsonia intracellularis GN=g... [more]
CH10_SYNY31.435e-1446.2510 kDa chaperonin OS=Synechocystis sp. (strain PCC... [more]
CH10_STRAW1.435e-1447.5010 kDa chaperonin OS=Streptomyces avermitilis GN=g... [more]

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Properties
Property NameValue
Genbank descriptionC01012H09SK Veg1 Citrus clementina cDNA clone C01012H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287748 ID=CX287748; Name=CX287748; organism=Citrus clementina; type=EST; length=401bp
AAAAACAAGCAGCAATTCGATTGATCAAGCTGCAATTCTTTATGTTCAAA
TAAGAGGACAGTCAAAATCCGTATGCCTTGAGGCAACTCAACCATAAAAT
TCAATTCACTAATACATATAAAGCCTCGCTCAAGTAAACACAGACAACTA
AGAGAGCACAGCCATCACTTCAGAAGCTCTTAAAGCAATGTAGTTGGTAC
CATCACTGCCCTTGAAGTCATTCCCTGCATACTTCGAATACATCACCGTG
TTCCCTGGTGCAATGGATAGAGGTTTCCTATTACCTTCCTCATCTAGAGG
ACCGGGTCCAACAGCAATGACCGTTCCAATGGAAGGTTTCTCCTTGCTTG
CCTCCGTCAACAACAAACCTCCAGCAGTTGTCTCCTCAGCCTCAGCAACC
T
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