CX287805

Overview
NameCX287805
Unique NameCX287805
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length485
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ERPA_ECOLU (Iron--sulfur cluster insertion protein erpA OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=erpA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.445e-12
Identity = 28/80 (35.00%), Postives = 49/80 (61.25%), Query Frame = 3 
Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LR+ +   GC+G  Y   + D+ ++ D  +E +GV +++DP +L +++G  +D+ +    S F+  NPN+K  CGCG SF
Sbjct:   33 LRVYITGGGCSGFQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIVTNPNAKSTCGCGSSF 112
[Close]
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ERPA_ECOLI (Iron-sulfur cluster insertion protein erpA OS=Escherichia coli (strain K12) GN=erpA PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.445e-12
Identity = 28/80 (35.00%), Postives = 49/80 (61.25%), Query Frame = 3 
Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LR+ +   GC+G  Y   + D+ ++ D  +E +GV +++DP +L +++G  +D+ +    S F+  NPN+K  CGCG SF
Sbjct:   33 LRVYITGGGCSGFQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIVTNPNAKSTCGCGSSF 112
[Close]
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ERPA_ECOLC (Iron--sulfur cluster insertion protein erpA OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=erpA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.445e-12
Identity = 28/80 (35.00%), Postives = 49/80 (61.25%), Query Frame = 3 
Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LR+ +   GC+G  Y   + D+ ++ D  +E +GV +++DP +L +++G  +D+ +    S F+  NPN+K  CGCG SF
Sbjct:   33 LRVYITGGGCSGFQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIVTNPNAKSTCGCGSSF 112
[Close]
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ERPA_ECOL6 (Iron-sulfur cluster insertion protein erpA OS=Escherichia coli O6 GN=erpA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.445e-12
Identity = 28/80 (35.00%), Postives = 49/80 (61.25%), Query Frame = 3 
Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LR+ +   GC+G  Y   + D+ ++ D  +E +GV +++DP +L +++G  +D+ +    S F+  NPN+K  CGCG SF
Sbjct:   33 LRVYITGGGCSGFQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIVTNPNAKSTCGCGSSF 112
[Close]
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ERPA_ECOL5 (Iron-sulfur cluster insertion protein erpA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=erpA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.445e-12
Identity = 28/80 (35.00%), Postives = 49/80 (61.25%), Query Frame = 3 
Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LR+ +   GC+G  Y   + D+ ++ D  +E +GV +++DP +L +++G  +D+ +    S F+  NPN+K  CGCG SF
Sbjct:   33 LRVYITGGGCSGFQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIVTNPNAKSTCGCGSSF 112
[Close]
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ERPA_ECOK1 (Iron-sulfur cluster insertion protein erpA OS=Escherichia coli O1:K1 / APEC GN=erpA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.445e-12
Identity = 28/80 (35.00%), Postives = 49/80 (61.25%), Query Frame = 3 
Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LR+ +   GC+G  Y   + D+ ++ D  +E +GV +++DP +L +++G  +D+ +    S F+  NPN+K  CGCG SF
Sbjct:   33 LRVYITGGGCSGFQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIVTNPNAKSTCGCGSSF 112
[Close]
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ERPA_ECOHS (Iron--sulfur cluster insertion protein erpA OS=Escherichia coli O9:H4 (strain HS) GN=erpA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.445e-12
Identity = 28/80 (35.00%), Postives = 49/80 (61.25%), Query Frame = 3 
Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LR+ +   GC+G  Y   + D+ ++ D  +E +GV +++DP +L +++G  +D+ +    S F+  NPN+K  CGCG SF
Sbjct:   33 LRVYITGGGCSGFQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIVTNPNAKSTCGCGSSF 112
[Close]
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ERPA_ECODH (Iron--sulfur cluster insertion protein erpA OS=Escherichia coli (strain K12 / DH10B) GN=erpA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.445e-12
Identity = 28/80 (35.00%), Postives = 49/80 (61.25%), Query Frame = 3 
Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LR+ +   GC+G  Y   + D+ ++ D  +E +GV +++DP +L +++G  +D+ +    S F+  NPN+K  CGCG SF
Sbjct:   33 LRVYITGGGCSGFQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIVTNPNAKSTCGCGSSF 112
[Close]
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ERPA_ECOBW (Iron--sulfur cluster insertion protein erpA OS=Escherichia coli (strain K12 / BW2952) GN=erpA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.445e-12
Identity = 28/80 (35.00%), Postives = 49/80 (61.25%), Query Frame = 3 
Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LR+ +   GC+G  Y   + D+ ++ D  +E +GV +++DP +L +++G  +D+ +    S F+  NPN+K  CGCG SF
Sbjct:   33 LRVYITGGGCSGFQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIVTNPNAKSTCGCGSSF 112
[Close]
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ERPA_ECO8A (Iron--sulfur cluster insertion protein erpA OS=Escherichia coli O8 (strain IAI1) GN=erpA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.445e-12
Identity = 28/80 (35.00%), Postives = 49/80 (61.25%), Query Frame = 3 
Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LR+ +   GC+G  Y   + D+ ++ D  +E +GV +++DP +L +++G  +D+ +    S F+  NPN+K  CGCG SF
Sbjct:   33 LRVYITGGGCSGFQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIVTNPNAKSTCGCGSSF 112
The following BLAST results are available for this feature:
BLAST of CX287805 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 254
Match NameE-valueIdentityDescription
ERPA_ECOLU3.445e-1235.00Iron--sulfur cluster insertion protein erpA OS=Esc... [more]
ERPA_ECOLI3.445e-1235.00Iron-sulfur cluster insertion protein erpA OS=Esch... [more]
ERPA_ECOLC3.445e-1235.00Iron--sulfur cluster insertion protein erpA OS=Esc... [more]
ERPA_ECOL63.445e-1235.00Iron-sulfur cluster insertion protein erpA OS=Esch... [more]
ERPA_ECOL53.445e-1235.00Iron-sulfur cluster insertion protein erpA OS=Esch... [more]
ERPA_ECOK13.445e-1235.00Iron-sulfur cluster insertion protein erpA OS=Esch... [more]
ERPA_ECOHS3.445e-1235.00Iron--sulfur cluster insertion protein erpA OS=Esc... [more]
ERPA_ECODH3.445e-1235.00Iron--sulfur cluster insertion protein erpA OS=Esc... [more]
ERPA_ECOBW3.445e-1235.00Iron--sulfur cluster insertion protein erpA OS=Esc... [more]
ERPA_ECO8A3.445e-1235.00Iron--sulfur cluster insertion protein erpA OS=Esc... [more]

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Properties
Property NameValue
Genbank descriptionC01013E06SK Veg1 Citrus clementina cDNA clone C01013E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287805 ID=CX287805; Name=CX287805; organism=Citrus clementina; type=EST; length=485bp
AACTGTTAGAGCGGCGTCAGCGTCCTTTCCTCCGTCTTGGCGTTAAGGCT
CGCGGCTGCAACGGCTTATCCTACACCCTCAATTATGCAGACGAGAAATC
AAAGTTCGATGAGGTGGTTGAGGACAAGGGCGTTAAGATATTAATTGATC
CGAAGGCACTGATGCATGTTATAGGAACCAAGATGGATTTCGTAGATGAC
AAACTCAGATCTGAGTTTGTATTCATCAACCCCAACTCGAAAGGGCAGTG
TGGTTGTGGAGAGTCCTTTATGACAACAAGCAGTGCGGAAGCTGCTAAGC
GAGGTCGTAGTTAATGATTATCATCTTAACTTCATTTTATCTCGTGGCGA
TCTTGCATATTTCATGCTGTCCAAGCAACCTTTTGATTCCCACTTACACT
GTTACTTATGTACGTAGACTATAACATAGATCAGAATTGTGGCTTACGCT
CATGTAAATAATGGTGATAATAGTATGGTAATTCA
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