CX287805 | Citrus Genome Database

Overview


Name	CX287805
Unique Name	CX287805
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	485

Libraries


Library Name	Type
Veg1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ERPA_ECO81 (Iron--sulfur cluster insertion protein erpA OS=Escherichia coli O81 (strain ED1a) GN=erpA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.445e-12
Identity = 28/80 (35.00%), Postives = 49/80 (61.25%), Query Frame = 3

Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LR+ +   GC+G  Y   + D+ ++ D  +E +GV +++DP +L +++G  +D+ +    S F+  NPN+K  CGCG SF
Sbjct:   33 LRVYITGGGCSGFQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIVTNPNAKSTCGCGSSF 112

[Close]

BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ERPA_ECO7I (Iron--sulfur cluster insertion protein erpA OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=erpA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.445e-12
Identity = 28/80 (35.00%), Postives = 49/80 (61.25%), Query Frame = 3

Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LR+ +   GC+G  Y   + D+ ++ D  +E +GV +++DP +L +++G  +D+ +    S F+  NPN+K  CGCG SF
Sbjct:   33 LRVYITGGGCSGFQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIVTNPNAKSTCGCGSSF 112

[Close]

BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ERPA_ECO5E (Iron--sulfur cluster insertion protein erpA OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=erpA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.445e-12
Identity = 28/80 (35.00%), Postives = 49/80 (61.25%), Query Frame = 3

Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LR+ +   GC+G  Y   + D+ ++ D  +E +GV +++DP +L +++G  +D+ +    S F+  NPN+K  CGCG SF
Sbjct:   33 LRVYITGGGCSGFQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIVTNPNAKSTCGCGSSF 112

[Close]

BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ERPA_ECO57 (Iron-sulfur cluster insertion protein erpA OS=Escherichia coli O157:H7 GN=erpA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.445e-12
Identity = 28/80 (35.00%), Postives = 49/80 (61.25%), Query Frame = 3

Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LR+ +   GC+G  Y   + D+ ++ D  +E +GV +++DP +L +++G  +D+ +    S F+  NPN+K  CGCG SF
Sbjct:   33 LRVYITGGGCSGFQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIVTNPNAKSTCGCGSSF 112

[Close]

BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ERPA_ECO55 (Iron--sulfur cluster insertion protein erpA OS=Escherichia coli (strain 55989 / EAEC) GN=erpA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.445e-12
Identity = 28/80 (35.00%), Postives = 49/80 (61.25%), Query Frame = 3

Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LR+ +   GC+G  Y   + D+ ++ D  +E +GV +++DP +L +++G  +D+ +    S F+  NPN+K  CGCG SF
Sbjct:   33 LRVYITGGGCSGFQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIVTNPNAKSTCGCGSSF 112

[Close]

BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ERPA_ECO45 (Iron--sulfur cluster insertion protein erpA OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=erpA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.445e-12
Identity = 28/80 (35.00%), Postives = 49/80 (61.25%), Query Frame = 3

Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LR+ +   GC+G  Y   + D+ ++ D  +E +GV +++DP +L +++G  +D+ +    S F+  NPN+K  CGCG SF
Sbjct:   33 LRVYITGGGCSGFQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIVTNPNAKSTCGCGSSF 112

[Close]

BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ERPA_ECO27 (Iron--sulfur cluster insertion protein erpA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=erpA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.445e-12
Identity = 28/80 (35.00%), Postives = 49/80 (61.25%), Query Frame = 3

Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LR+ +   GC+G  Y   + D+ ++ D  +E +GV +++DP +L +++G  +D+ +    S F+  NPN+K  CGCG SF
Sbjct:   33 LRVYITGGGCSGFQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIVTNPNAKSTCGCGSSF 112

[Close]

BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ERPA_ECO24 (Iron--sulfur cluster insertion protein erpA OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=erpA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.445e-12
Identity = 28/80 (35.00%), Postives = 49/80 (61.25%), Query Frame = 3

Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LR+ +   GC+G  Y   + D+ ++ D  +E +GV +++DP +L +++G  +D+ +    S F+  NPN+K  CGCG SF
Sbjct:   33 LRVYITGGGCSGFQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIVTNPNAKSTCGCGSSF 112

[Close]

BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ERPA_CITK8 (Iron--sulfur cluster insertion protein erpA OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=erpA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.445e-12
Identity = 29/80 (36.25%), Postives = 49/80 (61.25%), Query Frame = 3

Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LR+ +   GC+G  Y   + D+ ++ D  +E +GV +++DP +L +++G  +D+ +    S FV  NPN+K  CGCG SF
Sbjct:   33 LRVYITGGGCSGFQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGAVDYTEGLEGSRFVVTNPNAKSTCGCGSSF 112

[Close]

BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: YNIU_AZOVI (Uncharacterized protein in nifU 5'region OS=Azotobacter vinelandii PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.499e-12
Identity = 32/80 (40.00%), Postives = 50/80 (62.50%), Query Frame = 3

Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LR+ V+  GC+GL Y+L   +  ++ D++V+  G+ +LID  +   + G  MDFV+    S F F+NPN+   CGCG+SF
Sbjct:   26 LRIRVEGGGCSGLKYSLKLEEAGAEDDQLVDCDGITLLIDSASAPLLDGVTMDFVESMEGSGFTFVNPNATNSCGCGKSF 105

The following BLAST results are available for this feature:

BLAST of CX287805 vs. ExPASy Swiss-Prot

BLAST of CX287805 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 254


Match Name	E-value	Identity	Description
ERPA_ECO81	3.445e-12	35.00	Iron--sulfur cluster insertion protein erpA OS=Esc...	[more]
ERPA_ECO7I	3.445e-12	35.00	Iron--sulfur cluster insertion protein erpA OS=Esc...	[more]
ERPA_ECO5E	3.445e-12	35.00	Iron--sulfur cluster insertion protein erpA OS=Esc...	[more]
ERPA_ECO57	3.445e-12	35.00	Iron-sulfur cluster insertion protein erpA OS=Esch...	[more]
ERPA_ECO55	3.445e-12	35.00	Iron--sulfur cluster insertion protein erpA OS=Esc...	[more]
ERPA_ECO45	3.445e-12	35.00	Iron--sulfur cluster insertion protein erpA OS=Esc...	[more]
ERPA_ECO27	3.445e-12	35.00	Iron--sulfur cluster insertion protein erpA OS=Esc...	[more]
ERPA_ECO24	3.445e-12	35.00	Iron--sulfur cluster insertion protein erpA OS=Esc...	[more]
ERPA_CITK8	3.445e-12	36.25	Iron--sulfur cluster insertion protein erpA OS=Cit...	[more]
YNIU_AZOVI	4.499e-12	40.00	Uncharacterized protein in nifU 5'region OS=Azotob...	[more]

Pages

Properties


Property Name	Value
Genbank description	C01013E06SK Veg1 Citrus clementina cDNA clone C01013E06, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX287805 ID=CX287805; Name=CX287805; organism=Citrus clementina; type=EST; length=485bp
AACTGTTAGAGCGGCGTCAGCGTCCTTTCCTCCGTCTTGGCGTTAAGGCT
CGCGGCTGCAACGGCTTATCCTACACCCTCAATTATGCAGACGAGAAATC
AAAGTTCGATGAGGTGGTTGAGGACAAGGGCGTTAAGATATTAATTGATC
CGAAGGCACTGATGCATGTTATAGGAACCAAGATGGATTTCGTAGATGAC
AAACTCAGATCTGAGTTTGTATTCATCAACCCCAACTCGAAAGGGCAGTG
TGGTTGTGGAGAGTCCTTTATGACAACAAGCAGTGCGGAAGCTGCTAAGC
GAGGTCGTAGTTAATGATTATCATCTTAACTTCATTTTATCTCGTGGCGA
TCTTGCATATTTCATGCTGTCCAAGCAACCTTTTGATTCCCACTTACACT
GTTACTTATGTACGTAGACTATAACATAGATCAGAATTGTGGCTTACGCT
CATGTAAATAATGGTGATAATAGTATGGTAATTCA