CX287805

Overview
NameCX287805
Unique NameCX287805
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length485
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ERPA_NEIMB (Putative iron-sulfur cluster insertion protein erpA OS=Neisseria meningitidis serogroup B GN=erpA PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.485e-11
Identity = 28/80 (35.00%), Postives = 47/80 (58.75%), Query Frame = 3 
Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LR+ V   GC+G  Y   + + K+  D  +E  G+  L+DP +  +++G ++D+ +    S+FV  NPN++  CGCG SF
Sbjct:   31 LRVFVNGGGCSGFQYGFTFDEIKNDDDFEIEKNGLVFLVDPMSYQYLVGAEIDYTESLQGSQFVIRNPNAETTCGCGSSF 110
[Close]
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ERPA_NEIMA (Putative iron-sulfur cluster insertion protein erpA OS=Neisseria meningitidis serogroup A GN=erpA PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.485e-11
Identity = 28/80 (35.00%), Postives = 47/80 (58.75%), Query Frame = 3 
Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LR+ V   GC+G  Y   + + K+  D  +E  G+  L+DP +  +++G ++D+ +    S+FV  NPN++  CGCG SF
Sbjct:   31 LRVFVNGGGCSGFQYGFTFDEIKNDDDFEIEKNGLVFLVDPMSYQYLVGAEIDYTESLQGSQFVIRNPNAETTCGCGSSF 110
[Close]
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ERPA_NEIG1 (Putative iron-sulfur cluster insertion protein erpA OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=erpA PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.485e-11
Identity = 28/80 (35.00%), Postives = 47/80 (58.75%), Query Frame = 3 
Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LR+ V   GC+G  Y   + + K+  D  +E  G+  L+DP +  +++G ++D+ +    S+FV  NPN++  CGCG SF
Sbjct:   31 LRVFVNGGGCSGFQYGFTFDEIKNDDDFEIEKNGLVFLVDPMSYQYLVGAEIDYTESLQGSQFVIRNPNAETTCGCGSSF 110
[Close]
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ERPA_METPP (Putative iron-sulfur cluster insertion protein erpA OS=Methylibium petroleiphilum (strain PM1) GN=erpA PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.485e-11
Identity = 30/82 (36.59%), Postives = 49/82 (59.76%), Query Frame = 3 
Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMT 275
            LR+ V+  GC+G  Y   + +  +  D  +E  GV +LID  +L +++G ++D+ +D   ++FV  NPN+   CGCG SF T
Sbjct:   40 LRVFVQGGGCSGFQYGFTFDEIVNDDDTKMEKNGVMLLIDAMSLQYLVGAEIDYKEDLEGAQFVIKNPNATTTCGCGSSFST 121
The following BLAST results are available for this feature:
BLAST of CX287805 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 254
Match NameE-valueIdentityDescription
ERPA_NEIMB8.485e-1135.00Putative iron-sulfur cluster insertion protein erp... [more]
ERPA_NEIMA8.485e-1135.00Putative iron-sulfur cluster insertion protein erp... [more]
ERPA_NEIG18.485e-1135.00Putative iron-sulfur cluster insertion protein erp... [more]
ERPA_METPP8.485e-1136.59Putative iron-sulfur cluster insertion protein erp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01013E06SK Veg1 Citrus clementina cDNA clone C01013E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287805 ID=CX287805; Name=CX287805; organism=Citrus clementina; type=EST; length=485bp
AACTGTTAGAGCGGCGTCAGCGTCCTTTCCTCCGTCTTGGCGTTAAGGCT
CGCGGCTGCAACGGCTTATCCTACACCCTCAATTATGCAGACGAGAAATC
AAAGTTCGATGAGGTGGTTGAGGACAAGGGCGTTAAGATATTAATTGATC
CGAAGGCACTGATGCATGTTATAGGAACCAAGATGGATTTCGTAGATGAC
AAACTCAGATCTGAGTTTGTATTCATCAACCCCAACTCGAAAGGGCAGTG
TGGTTGTGGAGAGTCCTTTATGACAACAAGCAGTGCGGAAGCTGCTAAGC
GAGGTCGTAGTTAATGATTATCATCTTAACTTCATTTTATCTCGTGGCGA
TCTTGCATATTTCATGCTGTCCAAGCAACCTTTTGATTCCCACTTACACT
GTTACTTATGTACGTAGACTATAACATAGATCAGAATTGTGGCTTACGCT
CATGTAAATAATGGTGATAATAGTATGGTAATTCA
back to top