CX287805 | Citrus Genome Database

Overview


Name	CX287805
Unique Name	CX287805
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	485

Libraries


Library Name	Type
Veg1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISCA_SALCH (Iron-binding protein iscA OS=Salmonella choleraesuis GN=iscA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.228e-19
Identity = 42/80 (52.50%), Postives = 57/80 (71.25%), Query Frame = 3

Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEPTAEDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPNVKDECGCGESF 105

[Close]

BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISCA_SALAR (Iron-binding protein iscA OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=iscA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.228e-19
Identity = 42/80 (52.50%), Postives = 57/80 (71.25%), Query Frame = 3

Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEPTAEDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPNVKDECGCGESF 105

[Close]

BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISCA_SALA4 (Iron-binding protein iscA OS=Salmonella agona (strain SL483) GN=iscA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.228e-19
Identity = 42/80 (52.50%), Postives = 57/80 (71.25%), Query Frame = 3

Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEPTAEDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPNVKDECGCGESF 105

[Close]

BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISCA_SHISS (Iron-binding protein iscA OS=Shigella sonnei (strain Ss046) GN=iscA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.909e-19
Identity = 42/80 (52.50%), Postives = 57/80 (71.25%), Query Frame = 3

Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105

[Close]

BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISCA_SHIFL (Iron-binding protein iscA OS=Shigella flexneri GN=iscA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.909e-19
Identity = 42/80 (52.50%), Postives = 57/80 (71.25%), Query Frame = 3

Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105

[Close]

BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISCA_SHIDS (Iron-binding protein iscA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=iscA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.909e-19
Identity = 42/80 (52.50%), Postives = 57/80 (71.25%), Query Frame = 3

Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105

[Close]

BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISCA_SHIBS (Iron-binding protein iscA OS=Shigella boydii serotype 4 (strain Sb227) GN=iscA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.909e-19
Identity = 42/80 (52.50%), Postives = 57/80 (71.25%), Query Frame = 3

Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105

[Close]

BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISCA_ESCF3 (Iron-binding protein iscA OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=iscA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.909e-19
Identity = 42/80 (52.50%), Postives = 57/80 (71.25%), Query Frame = 3

Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105

[Close]

BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISCA_ECOSM (Iron-binding protein iscA OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=iscA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.909e-19
Identity = 42/80 (52.50%), Postives = 57/80 (71.25%), Query Frame = 3

Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105

[Close]

BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISCA_ECOSE (Iron-binding protein iscA OS=Escherichia coli (strain SE11) GN=iscA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.909e-19
Identity = 42/80 (52.50%), Postives = 57/80 (71.25%), Query Frame = 3

Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105

The following BLAST results are available for this feature:

BLAST of CX287805 vs. ExPASy Swiss-Prot

BLAST of CX287805 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 254


Match Name	E-value	Identity	Description
ISCA_SALCH	2.228e-19	52.50	Iron-binding protein iscA OS=Salmonella choleraesu...	[more]
ISCA_SALAR	2.228e-19	52.50	Iron-binding protein iscA OS=Salmonella arizonae (...	[more]
ISCA_SALA4	2.228e-19	52.50	Iron-binding protein iscA OS=Salmonella agona (str...	[more]
ISCA_SHISS	2.909e-19	52.50	Iron-binding protein iscA OS=Shigella sonnei (stra...	[more]
ISCA_SHIFL	2.909e-19	52.50	Iron-binding protein iscA OS=Shigella flexneri GN=...	[more]
ISCA_SHIDS	2.909e-19	52.50	Iron-binding protein iscA OS=Shigella dysenteriae ...	[more]
ISCA_SHIBS	2.909e-19	52.50	Iron-binding protein iscA OS=Shigella boydii serot...	[more]
ISCA_ESCF3	2.909e-19	52.50	Iron-binding protein iscA OS=Escherichia fergusoni...	[more]
ISCA_ECOSM	2.909e-19	52.50	Iron-binding protein iscA OS=Escherichia coli (str...	[more]
ISCA_ECOSE	2.909e-19	52.50	Iron-binding protein iscA OS=Escherichia coli (str...	[more]

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Properties


Property Name	Value
Genbank description	C01013E06SK Veg1 Citrus clementina cDNA clone C01013E06, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX287805 ID=CX287805; Name=CX287805; organism=Citrus clementina; type=EST; length=485bp
AACTGTTAGAGCGGCGTCAGCGTCCTTTCCTCCGTCTTGGCGTTAAGGCT
CGCGGCTGCAACGGCTTATCCTACACCCTCAATTATGCAGACGAGAAATC
AAAGTTCGATGAGGTGGTTGAGGACAAGGGCGTTAAGATATTAATTGATC
CGAAGGCACTGATGCATGTTATAGGAACCAAGATGGATTTCGTAGATGAC
AAACTCAGATCTGAGTTTGTATTCATCAACCCCAACTCGAAAGGGCAGTG
TGGTTGTGGAGAGTCCTTTATGACAACAAGCAGTGCGGAAGCTGCTAAGC
GAGGTCGTAGTTAATGATTATCATCTTAACTTCATTTTATCTCGTGGCGA
TCTTGCATATTTCATGCTGTCCAAGCAACCTTTTGATTCCCACTTACACT
GTTACTTATGTACGTAGACTATAACATAGATCAGAATTGTGGCTTACGCT
CATGTAAATAATGGTGATAATAGTATGGTAATTCA