CX287805 | Citrus Genome Database

Overview


Name	CX287805
Unique Name	CX287805
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	485

Libraries


Library Name	Type
Veg1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISCA_ECOLU (Iron-binding protein iscA OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=iscA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.909e-19
Identity = 42/80 (52.50%), Postives = 57/80 (71.25%), Query Frame = 3

Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105

[Close]

BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISCA_ECOLI (Iron-binding protein iscA OS=Escherichia coli (strain K12) GN=iscA PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.909e-19
Identity = 42/80 (52.50%), Postives = 57/80 (71.25%), Query Frame = 3

Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105

[Close]

BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISCA_ECOLC (Iron-binding protein iscA OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=iscA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.909e-19
Identity = 42/80 (52.50%), Postives = 57/80 (71.25%), Query Frame = 3

Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105

[Close]

BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISCA_ECOL6 (Iron-binding protein iscA OS=Escherichia coli O6 GN=iscA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.909e-19
Identity = 42/80 (52.50%), Postives = 57/80 (71.25%), Query Frame = 3

Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105

[Close]

BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISCA_ECOL5 (Iron-binding protein iscA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=iscA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.909e-19
Identity = 42/80 (52.50%), Postives = 57/80 (71.25%), Query Frame = 3

Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105

[Close]

BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISCA_ECOK1 (Iron-binding protein iscA OS=Escherichia coli O1:K1 / APEC GN=iscA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.909e-19
Identity = 42/80 (52.50%), Postives = 57/80 (71.25%), Query Frame = 3

Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105

[Close]

BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISCA_ECODH (Iron-binding protein iscA OS=Escherichia coli (strain K12 / DH10B) GN=iscA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.909e-19
Identity = 42/80 (52.50%), Postives = 57/80 (71.25%), Query Frame = 3

Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105

[Close]

BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISCA_ECOBW (Iron-binding protein iscA OS=Escherichia coli (strain K12 / BW2952) GN=iscA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.909e-19
Identity = 42/80 (52.50%), Postives = 57/80 (71.25%), Query Frame = 3

Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105

[Close]

BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISCA_ECO8A (Iron-binding protein iscA OS=Escherichia coli O8 (strain IAI1) GN=iscA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.909e-19
Identity = 42/80 (52.50%), Postives = 57/80 (71.25%), Query Frame = 3

Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105

[Close]

BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISCA_ECO81 (Iron-binding protein iscA OS=Escherichia coli O81 (strain ED1a) GN=iscA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.909e-19
Identity = 42/80 (52.50%), Postives = 57/80 (71.25%), Query Frame = 3

Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105

The following BLAST results are available for this feature:

BLAST of CX287805 vs. ExPASy Swiss-Prot

BLAST of CX287805 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 254


Match Name	E-value	Identity	Description
ISCA_ECOLU	2.909e-19	52.50	Iron-binding protein iscA OS=Escherichia coli O17:...	[more]
ISCA_ECOLI	2.909e-19	52.50	Iron-binding protein iscA OS=Escherichia coli (str...	[more]
ISCA_ECOLC	2.909e-19	52.50	Iron-binding protein iscA OS=Escherichia coli (str...	[more]
ISCA_ECOL6	2.909e-19	52.50	Iron-binding protein iscA OS=Escherichia coli O6 G...	[more]
ISCA_ECOL5	2.909e-19	52.50	Iron-binding protein iscA OS=Escherichia coli O6:K...	[more]
ISCA_ECOK1	2.909e-19	52.50	Iron-binding protein iscA OS=Escherichia coli O1:K...	[more]
ISCA_ECODH	2.909e-19	52.50	Iron-binding protein iscA OS=Escherichia coli (str...	[more]
ISCA_ECOBW	2.909e-19	52.50	Iron-binding protein iscA OS=Escherichia coli (str...	[more]
ISCA_ECO8A	2.909e-19	52.50	Iron-binding protein iscA OS=Escherichia coli O8 (...	[more]
ISCA_ECO81	2.909e-19	52.50	Iron-binding protein iscA OS=Escherichia coli O81 ...	[more]

Pages

Properties


Property Name	Value
Genbank description	C01013E06SK Veg1 Citrus clementina cDNA clone C01013E06, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX287805 ID=CX287805; Name=CX287805; organism=Citrus clementina; type=EST; length=485bp
AACTGTTAGAGCGGCGTCAGCGTCCTTTCCTCCGTCTTGGCGTTAAGGCT
CGCGGCTGCAACGGCTTATCCTACACCCTCAATTATGCAGACGAGAAATC
AAAGTTCGATGAGGTGGTTGAGGACAAGGGCGTTAAGATATTAATTGATC
CGAAGGCACTGATGCATGTTATAGGAACCAAGATGGATTTCGTAGATGAC
AAACTCAGATCTGAGTTTGTATTCATCAACCCCAACTCGAAAGGGCAGTG
TGGTTGTGGAGAGTCCTTTATGACAACAAGCAGTGCGGAAGCTGCTAAGC
GAGGTCGTAGTTAATGATTATCATCTTAACTTCATTTTATCTCGTGGCGA
TCTTGCATATTTCATGCTGTCCAAGCAACCTTTTGATTCCCACTTACACT
GTTACTTATGTACGTAGACTATAACATAGATCAGAATTGTGGCTTACGCT
CATGTAAATAATGGTGATAATAGTATGGTAATTCA