CX287805

Overview
NameCX287805
Unique NameCX287805
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length485
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISCA_ECO7I (Iron-binding protein iscA OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=iscA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.909e-19
Identity = 42/80 (52.50%), Postives = 57/80 (71.25%), Query Frame = 3
Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105          
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISCA_ECO57 (Iron-binding protein iscA OS=Escherichia coli O157:H7 GN=iscA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.909e-19
Identity = 42/80 (52.50%), Postives = 57/80 (71.25%), Query Frame = 3
Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105          
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISCA_ECO55 (Iron-binding protein iscA OS=Escherichia coli (strain 55989 / EAEC) GN=iscA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.909e-19
Identity = 42/80 (52.50%), Postives = 57/80 (71.25%), Query Frame = 3
Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105          
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISCA_ECO45 (Iron-binding protein iscA OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=iscA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.909e-19
Identity = 42/80 (52.50%), Postives = 57/80 (71.25%), Query Frame = 3
Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105          
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISCA_ECO27 (Iron-binding protein iscA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=iscA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.909e-19
Identity = 42/80 (52.50%), Postives = 57/80 (71.25%), Query Frame = 3
Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105          
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISCA_SALNS (Iron-binding protein iscA OS=Salmonella newport (strain SL254) GN=iscA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.800e-19
Identity = 42/80 (52.50%), Postives = 56/80 (70.00%), Query Frame = 3
Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LRLGV+  GC+G++Y L + DE    D V EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEPMAEDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPNVKDECGCGESF 105          
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISCA_EDWI9 (Iron-binding protein iscA OS=Edwardsiella ictaluri (strain 93-146) GN=iscA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 4.963e-19
Identity = 41/80 (51.25%), Postives = 59/80 (73.75%), Query Frame = 3
Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LRLGVK  GC+G++Y L + D  ++ D V ED+GVK+++D K+L+++ GT++DFV + L   F F NPN K +CGCGESF
Sbjct:   26 LRLGVKTSGCSGMAYVLEFVDVLNEDDVVFEDQGVKVIVDGKSLVYLDGTELDFVKEGLNEGFKFNNPNVKNECGCGESF 105          
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISCA_YERE8 (Iron-binding protein iscA OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=iscA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.481e-19
Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 3
Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK++ID K+++++ GT++DFV + L   F F NPN   +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYILEFVDEMNDDDIVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPNVSSECGCGESF 105          
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISCA_YERPY (Iron-binding protein iscA OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=iscA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.465e-19
Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 3
Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK++ID K+++++ GT++DFV + L   F F NPN   +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEINDDDIVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPNVSNECGCGESF 105          
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISCA_YERPS (Iron-binding protein iscA OS=Yersinia pseudotuberculosis GN=iscA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.465e-19
Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 3
Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK++ID K+++++ GT++DFV + L   F F NPN   +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEINDDDIVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPNVSNECGCGESF 105          
The following BLAST results are available for this feature:
BLAST of CX287805 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 254
Match NameE-valueIdentityDescription
ISCA_ECO7I2.909e-1952.50Iron-binding protein iscA OS=Escherichia coli O7:K... [more]
ISCA_ECO572.909e-1952.50Iron-binding protein iscA OS=Escherichia coli O157... [more]
ISCA_ECO552.909e-1952.50Iron-binding protein iscA OS=Escherichia coli (str... [more]
ISCA_ECO452.909e-1952.50Iron-binding protein iscA OS=Escherichia coli O45:... [more]
ISCA_ECO272.909e-1952.50Iron-binding protein iscA OS=Escherichia coli O127... [more]
ISCA_SALNS3.800e-1952.50Iron-binding protein iscA OS=Salmonella newport (s... [more]
ISCA_EDWI94.963e-1951.25Iron-binding protein iscA OS=Edwardsiella ictaluri... [more]
ISCA_YERE86.481e-1951.25Iron-binding protein iscA OS=Yersinia enterocoliti... [more]
ISCA_YERPY8.465e-1951.25Iron-binding protein iscA OS=Yersinia pseudotuberc... [more]
ISCA_YERPS8.465e-1951.25Iron-binding protein iscA OS=Yersinia pseudotuberc... [more]

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Properties
Property NameValue
Genbank descriptionC01013E06SK Veg1 Citrus clementina cDNA clone C01013E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287805 ID=CX287805; Name=CX287805; organism=Citrus clementina; type=EST; length=485bp
AACTGTTAGAGCGGCGTCAGCGTCCTTTCCTCCGTCTTGGCGTTAAGGCT
CGCGGCTGCAACGGCTTATCCTACACCCTCAATTATGCAGACGAGAAATC
AAAGTTCGATGAGGTGGTTGAGGACAAGGGCGTTAAGATATTAATTGATC
CGAAGGCACTGATGCATGTTATAGGAACCAAGATGGATTTCGTAGATGAC
AAACTCAGATCTGAGTTTGTATTCATCAACCCCAACTCGAAAGGGCAGTG
TGGTTGTGGAGAGTCCTTTATGACAACAAGCAGTGCGGAAGCTGCTAAGC
GAGGTCGTAGTTAATGATTATCATCTTAACTTCATTTTATCTCGTGGCGA
TCTTGCATATTTCATGCTGTCCAAGCAACCTTTTGATTCCCACTTACACT
GTTACTTATGTACGTAGACTATAACATAGATCAGAATTGTGGCTTACGCT
CATGTAAATAATGGTGATAATAGTATGGTAATTCA
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